Publications


2002

Ananko E.A., Podkolodny N.L., Stepanenko I.L., Ignatieva E.V., Podkolodnaya O.A., Kolchanov N.A. GeneNet: a database on structure and functional organisation of gene networks. // Nucleic Acids Res., 2002. V. 30. No. 1. P. 398-401.
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Kolchanov N.A., Nedosekina E.A., Ananko E.A., Likhoshvai V.A., Podkolodny N.L., Ratushny A.V., Stepanenko I.L., Podkolodnaya O.A., Ignatieva E.V., Matushkin Y.G. GeneNet database: description and modeling of gene networks. // In Silico Biol. 2002. V. 2. No. 2. P. 97-110.


2000

Kolchanov N.A., Anan'ko E.A., Kolpakov F.A., Podkolodnaya O.A., Ignat'eva E.V., Goryachkovskaya T.N., Stepanenko I.L. Gene Networks // Molecular Biology (Msk.), 2000. V. 34. No. 4. P. 449-460.

Ananko E.A., Kolpakov F.A., Kolchanov N.A. GeneNet database: a technology for a formalized description of gene networks. // Proc. of the Second International Conference on Bioinformatics of Genome Regulation and Structure. BGRS'2000. Novosibirsk, Russia, August 7-11, 2000. P. 174-177.

Ratushny A.V., Podkolodnaya O.A., Ananko E.A., Likhoshvai V.A. Mathematical model of erythroid cell differentiation regulation. // Proc. of the Second International Conference on Bioinformatics of Genome Regulation and Structure. BGRS'2000. Novosibirsk, Russia, August 7-11, 2000. P. 203-206.

Ratushny A.V., Ignatieva E.V., Matushkin Yu.G., Likhoshvai V.A. Mathematical model of cholesterol biosynthesis regulation in the cell // Proc. of the Second International Conference on Bioinformatics of Genome Regulation and Structure. BGRS'2000. Novosibirsk, Russia, August 7-11, 2000. P. 199-202.


1999

Kolpakov F.A. and Ananko E.A. Interactive data input into the GeneNet database // Bioinformatics. 1999. V. 15. No. 7/8. P. 713-714.

Anan'ko E.A., Kolpakov F.A., Kolesov G.B., Kolchanov N.A. Automatic generation of gene network schemes based on their formalized description in the GeneNet database. // Biophysics (Msk.). 1999. V.44. No. 4. P. 610-613.

Kolpakov F.A., Ananko E.A. The GeneNet database: formalized description and visualization of gene networks dynamics based on experimental data // Proc. of the international conference on Theory and Mathematics in Biology and Medicine. 1999. Amsterdam. The Netherlands, June 29 – July 3. P. 286

Ananko E.A., Kolpakov F.A., Podkolodnaya O.A., Ignatieva E.V., Goryachkovsky T.N.,Stepanenko I.L., Busygina T.V., Kolesov G.B., Grigorovich D.A., Kolchanov N.A. Gene networks: formalized description and visualization in the GeneNet database // Proc. of the international conference on Theory and Mathematics in Biology and Medicine. 1999. Amsterdam. The Netherlands, June 29 – July 3. P. 58-59


1998

Kolpakov F.A., Ananko E.A., Kolesov G.B. and Kolchanov N.A. GeneNet: a database for gene networks and its automated visualization // Bioinformatics, 1998. V.14. No. 6. P. 529-537.

Ananko E.A., Kolpakov F.A., Kolesov G.B., Kolchanov N.A. Gene networks: a database and its automated visualization through the Internet in the GeneNet computing system // Proc. I Intern. Conference on Bioinformatics of Genome Regulation and Structure. Novosibirsk. Russia. 1998. P. 82-85.

Kolpakov F.A., Ananko E.A., Kolesov G.B., Kolchanov N.A. GeneNet: a database for gene networks and its automated visualization through the Internet // Dagstuhl seminar “Bioinformatics” Modelling and simulation of gene regulation and metabolic pathways. 1998

Ananko E.A., Kolpakov F.A., Kolesov G.B., Kolchanov N.A. Automatic generation of gene networks schemes from formalized description in the GeneNet database // Abstracts of Theoretical Biophysics International School. 1998. Moscow. P. 26