podkolodny.jpg (6931 bytes)

Nikolay L. Podkolodny, Senior Researcher, Head of Network department

Curriculum Vitae and List of Publications

 

Work Experience and Current Position:

1999-present : Head of Network department of Institute of Cytology and Genetics, Novosibirsk, 630090, Russia

1998-present : Senior Researcher of Institute of Cytology and Genetics, Novosibirsk, 630090, Russia 1985-now : Researcher of Institute of Computational Mathematics and Mathematical Geophysics Siberian Division of RAS. Novosibirsk

1978-1985 : Junior Researcher of Computing Center.

1976-1978 : Junior Researcher of Clinical Department of institute of Citology and Genetics

1974-1976 : Post Graduate Student of Clinical Department of institute of Cytology and Genetics

Area of Scientific interest:

Distributed Data bases and Knowledge-based systems, Knowledge Discovery & Data mining, Mathematical Modeling of BioMedical processes, Internet and network technologies, Databases on regulatory genomic sequences, integration of heterogeneous informational resources.

Education Background:

Full secondary school, 1959 - 1969

Novosibirsk State University (Physics Faculty: Physics & Applied Mathematics), 1969-1974.

Bibliography:

Articles:

  1. Heinemeyer T., Wingender E., Reuter I., Hermjakob H., Kel A.E., Kel O.V., Ignatieva E.V., Ananko E.A., Podkolodnaya O.A., Kolpakov F.A., Podkolodny N.L., Kolchanov N.A. Databases on transcriptional reguklation: TRANSFAC, TRRD and COMPEL. Nucleic Acids Research, 1998, Vol. 26, N1, 362-367.
  2. Kolchanov N.A., Ananko E.A., Podkolodnaya O.A., Ignatieva E.V., Stepanenko I.L., Kel-Margoulis O.V., Kel A.E., Merkulova T.I., Goryachkovsky T.N., Busygina T.V., Kolpakov F.A., Podkolodny N.L., Naumochkin A.N., Romashchenko A.G. Transcription Regulatory Regions Database (TRRD): its status in 1999. // Nucleic Acids Res. 1999, V. 27, No. 1, p. 303-306.
  3. Kolchanov N.A., Podkolodny N.L. et al. Transcription Regulatory Regions Database (TRRD): its status in 2000. // Nucleic Acids. Res. 2000. V. 28. 1.
  4. Kolchanov N. A, Ponomarenko M.P., Frolov A. S., Ananko E. A., Kolpakov F. A., Ignatieva E. V., Podkolodnaya O. A., Goryachkovsky T. N., Stepanenko I. L., Merkulova T. I., Babenko V. V., Ponomarenko Yu. V., Kochetov A. V., Podkolodny N. L., Vorobiev D. V., Lavryushev S. V, Grigorovich D. A., Kondrakhin Yu. V., Milanesi L., Wingender E., Solovyev V. and Overton G. C. Integrated databases and computer systems for studying eukaryotic gene expression // Bioinformatics, 1999, V. 15, pp. 669-686.
  5. Ponomarenko M.P., Ponomarenko J.V., Frolov A.S., Podkolodny N.L., Savinkova L.K., Kolchanov N.A., and Overton G.C. (1999) Identification of sequence-dependent features correlating to activity of DNA sites interacting with proteins. Bioinformatics, V. 15, N. 7/8, P. 687-703.
  6. Kolchanov N.A., Ponomarenko M.P., Kel A.E., Kondrakhin Yu.V., Frolov A.S., Kolpakov F.A., Goriachkovsky T.N., Kel-Margulis O.V., Ananko E.A., Ignatieva E.V., Podkolodnaia O.A., Stepanenko I.L., Merkulova T.I., Babenko V.N., Vorobiev D.G., Lavryushev S.V., Ponomarenko J.V., Kochetov A.V., Kolesov G.N., Podkolodny N.L., Milanesi L., Wingender E., Heinemeier T., Solovyev V.V., Overton G.C. (1999) GeneExpress: a WWW-oriented integrator for databases and computer systems for studying the eukaryotic gene expression. Biofizika, V. 44, N. 5, P. 837-841.
  7. Kolchanov N.A., Podkolodnaya O.A., Ananko E.A., Ignatieva E.V., Stepanenko I.L., Kel-Margoulis O.V., Kel A.E., Merkulova T.I., Goryachkovskaya T.N., Busygina T.V., Kolpakov F.A., Podkolodny N.L., Naumochkin A.N., Korostishevskaya I.M., Romashchenko A.G., Overton G.C. Transcription Regulatory Regions Database (TRRD): its status in 2000. Nucleic Acids Res., 2000, 28, 1, 298-301