Date of Birth: 23.07.1977.

Work Address: Institute of Cytology and Genetics, Novosibirsk, 630090, Russia

Telephone: +7(3832) 333-119

FAX: +7(3832) 331-278

Email: ratushny@bionet.nsc.ru

Work Experience and Current Position:

2003 - present research scientist, Laboratory of Theoretical Genetics, Institute of Cytology and Genetics, Novosibirsk, 630090 Russia.

2003 (october-november) - visiting scientist, CNR Institute of Biomedical Technology (CNR-ITB), Segrate (Milan), Italy.

2000 - 2003 PhD. student, Laboratory of Theoretical Genetics, Institute of Cytology and Genetics, Novosibirsk, 630090 Russia.

1999 - 2000 Laboratory Assistant, Laboratory of Theoretical Genetics, Institute of Cytology and Genetics, Novosibirsk, 630090 Russia.

1998 - 1999 Laboratory Assistant, Institute of Chemical Kinetics and Combustion, Novosibirsk, 630090 Russia.

Areas of Scientific interest:

Systems biology, mathematical and computer dynamic modeling of gene, protein, metabolic, signaling networks in living cells and organisms, regulation of cholesterol homeostasis in mamalian cells, erythroid differentiation, gene regulation of E.coli metabolism.

Education Background:

Secondary school, Andizhan, 1984 - 1992.

Selective school of physics and mathematics,  Novosibirsk, 1992 - 1994.

Novosibirsk State University, Faculty of Natural Sciences, 1994 - 2000.

Degrees

1998: Bachelor's degree in Chemical Ecology and Nature Management, Novosibirsk State University, Novosibirsk, Russia

2000: M. Sc. in Chemistry, Novosibirsk State University, Novosibirsk, Russia

2006: Ph.D. in Bioinformatics, Institute of Cytology and Genetics, Novosibirsk, Russia

Thesis

Degree: M. Sc. in Chemistry, 2000

Title: "The modeling of structural-functional organization and evolution of the molecular-genetic systems under changing environment conditions"

Novosibirsk State University, Novosibirsk, Russia

Thesis advisors: Nikolay A. Kolchanov, Prof., Dr.Sci., Vitaly A. Likhoshvai, Ph.D.

Degree: Ph.D. in Bioinformatics, 2006

Title: "Mathematical modelling of gene network dynamics"

Institution: Novosibirsk Institute of Cytology and Genetics, Novosibirsk, Russia

Thesis advisor: Nikolay A. Kolchanov, Prof., Dr.Sci.

2005:

4^th European Conference on Computational Biology (ECCB'05), Madrid, Spain (September 29-October 1), poster presentation.

Moscow Conference on Computational Molecular Biology (MCCMB'05) Moscow, Russia, (July 18-21), report.

2004:

The 12^th International Conference on Intelligent Systems for Molecular Biology&3^rd European Conference on Computational Biology (ISMB-ECCB'04), Glasgow, UK (July 31 - August 4), poster presentation.

Workshop on Biosimulation (ISMB&ECCB'04 SIGSIM), Glasgow, UK (July 29 -30), oral presentation.

The 4^th International Conference on Bioinformatics of Genome Regulation and Structure (BGRS'2004), Novosibirsk, Russia (July 25-30), poster presentation.

FEBS Special Meeting 45^th International Conference on the Bioscience of Lipids (ICBL'04), Ioannina, Greece, (May 25-29),  poster presentation.

2003:

German Conference on Bioinformatics (GCB'03), Neuherberg/Garching near Munich, Germany, (October 12-14),  poster presentation.

2^nd European Conference on Computational Biology (ECCB'03), Paris, France (September 27-30),  poster presentation.

Moscow Conference on Computational Molecular Biology (MCCMB'03) Moscow, Russia, (July 22-25), report.

2002:

The 43^rd International Conference on the Bioscience of Lipids (ICBL'02), Graz, Austria, (September 11-14),  poster presentation.

The 10^th International Conference on Intelligent Systems for Molecular Biology (ISMB'02), Edmonton, Alberta, Canada, (August 3 - 7), poster presentation.

Special Interest Group for Biological Simulation (SIGSIM), ISMB2002 Satellite Meeting on Computer Modeling of Cellular Processes, Edmonton, Alberta, Canada (August 3), poster presentation.

The 3^rd International Conference on Bioinformatics of Genome Regulation and Structure (BGRS'02), Novosibirsk, Russia (July 14 - 20), report and 3 poster presentations.

2001:

The Gordon Research Conference "Bioinformatics: From Inference to Predictive Models". The Tilton School, Tilton, New Hampshire, USA (August 19 - 24), poster presentation.

Practical Course "Bioinformatics: Computer Methods in Molecular Biology. Trieste, Italy (29 June - 6 July).

Dagstuhl Seminar "Functional Genomics" Information and Simulation Systems for the Analysis of Gene Regulation and Metabolic Pathways, Dagstuhl, Germany (June 24 - 29), coreport.

2000:

The 3^rd Russian Workshop on Modeling of Nonequilibrium Systems. Krasnoyarsk, Russia (October 20 - 22), poster presentation.

The 2^nd International Conference on Bioinformatics of Genome Regulation and Structure (BGRS'00), Novosibirsk, Russia (August 7 - 11), 2 poster presentations.

2005:

ISCB Travel Fellowship, The International Society for Computational Biology (for participation at 4^th European Conference on Computational Biology).

2004:

ISCB Travel Fellowship, The International Society for Computational Biology (for participation at the 12^th International Conference on Intelligent Systems for Molecular Biology&3^rd European Conference on Computational Biology and ISMB&ECCB 2004 SIGSIM).

Travel grant for participation at FEBS Special Meeting 45^th International Conference on the Bioscience of Lipids, Ioannina, Greece, May 25-29.

2003:

NATO Science Programme, Collaborative Linkage Grant No.LST.CLG 979816.

ECCB Travel Fellowship, (for participation at 2^nd European Conference on Computational Biology).

2002:

Travel grant from Austrian Ministry of Science (for participation at the 43^rd International Conference on the Bioscience of Lipids).

ISCB Travel Fellowship, The International Society for Computational Biology (for participation at the 10^th International Conference on Intelligent Systems for Molecular Biology and   ISMB2002 Satellite Meeting on Computer Modeling of Cellular Processes).

2001:

Travel grant from the Gordon Research Conferences (for participation at the Gordon Research Conference "Bioinformatics: From Inference to Predictive Models" ).

Travel grant from Schloss Dagstuhl (for participation at the Dagstuhl Seminar "Functional Genomics" Information and Simulation Systems for the Analysis of Gene Regulation and Metabolic Pathways).

Publications

Book Chapter

2002:

Nikolay A. Kolchanov, Elena A. Ananko, Vitali A. Likhoshvani, Olga A. Podkolodnaya, Elena V. Ignatieva, Alexander V. Ratushny, and Yuri G. Matushkin. Gene Networks Description and Modeling in the GeneNet System, Chapter 5, in eds. Julio Collado-Vides and Ralf Hofestadt, "Gene Regulation and Metabolism", The MIT Press, Cambridge, Massachusetts, 2002.

Papers

2005:

Ananko EA, Podkolodny NL, Stepanenko IL, Podkolodnaya OA, Rasskazov DA, Miginsky DS, Likhoshvai VA, Ratushny AV, Podkolodnaya NN, Kolchanov NA. GeneNet in 2005. Nucleic Acids Res. 2005 Jan 1;33 Database Issue:D425-7.

А.В. Ратушный, В.А. Лихошвай, Е.А. Ананько, Н.В. Владимиров, К.В. Гунбин, С.А. Лашин, Е.А. Недосекина, С.В. Николаев, Л.В. Омельянчук, Ю.Г. Матушкин, Н.А. Колчанов. Новосибирская школа системной компьютерной биологии: исторический экскурс и перспективы развития. Информационный вестник ВОГиС, 2005, 9(2), с. 232-261.

2004:

Ratushny A.V., Ignatieva E.V., Likhoshvai V.A. Computer Dynamic Modeling of the Gene Network Controlling Intracellular Cholesterol Homeostasis In: Bioinformatics of genome regulation and structure. Ed. by N. Kolchanov and R. Hofestaedt, Kluwer Academic Publishers, Boston/Dordrecht/London, 2004, pp. 293-300.

Н.А. Колчанов, О.А, Подколодная, Е.А. Ананько, Д.А. Афонников, О.В. Вишневский, Д.В. Воробьев, Е.В. Игнатьева, В.Г. Левицкий, В.А. Лихошвай, Н.А. Омельянчук, Н.Л. Подколодный, А.В. Ратушный. Интегрированная компьютерная система по регуляции экспрессии генов эукариот. Молекулярная Биология, 2004, том 38, ╧ 1, с. 1-13.

Kolchanov NA, Podkolodnaia OA, Anan'ko EA, Afonnikov DA, Vishnevskii OV, Vorob'ev DG, Ignat'eva EV, Levitskii VG, Likhoshvai VA, Omel'ianchuk NA, Ratushny AV, Podkolodny NL. [Integrated computer system for regulating eukaryotic gene expression]. Mol Biol (Mosk). 2004 Jan-Feb;38(1):69-81. [Article in Russian]

Н.А. Колчанов, А.Ф. Латыпов, В.А. Лихошвай, Ю.Г. Матушкин, Ю.В. Никуличев, А.В. Ратушный. Задачи оптимального управления в динамике генных сетей и методы их решения. Известия РАН. Теория и системы управления, 2004, ╧6, с.36-45

Фадеев С.И., Гайнова И.А., Березин А.Ю., Ратушный А.В., Матушкин Ю.Г., Лихошвай В.А. Исследование стационарных решений в моделях генных сетей методом гомотопии // Сибирские Электронные Математические Известия (SEMR). T.1 (2004), c.c. 64-75.

Golubyatnikov V., Likhoshvai V., Ratushny A. Existence of Closed Trajectories in 3-D Gene Networks: The journal of three dimensional images 3D forum. Vol.18 N.4, 2004.12, p. 96-101.

Golubyatnikov V.P., Likhoshvai V.A., Ratushny A.V. Oscillatory gene networks modeling and Hopf bifurcation. Proceedings of the 7-th International Conference Human and Computer (HC-2004), September 1-3, 2004, University of Aizu, Japan, 2004, pp.72-77.

2003:

Ratushny AV, Likhoshvai VA, Ignatieva EV, Kolchanov NA. Resilience of Cholesterol Concentration to a Wide Range of Mutations in the Cell. Complexus, 2003;1:142-148.

Ratushnyi AV, Likhoshvai VA, Ignat'eva EV, Matushkin YG, Goryanin II, Kolchanov NA. A computer model of the gene network of the cholesterol biosynthesis regulation in the cell: analysis of the effect of mutations. Dokl Biochem Biophys. 2003 Mar-Apr;389:90-3. [in Russian].

Golubyatnikov V.P., Likhoshvai V.A., Fadeev S.I., Matushkin Yu.G., Ratushny A.V., Kolchanov N.A. Mathematical and Computer modeling of genetic networks. Proceedings of the 6-th International Conference Human and Computer (HC-2003), August 28-30, 2003, University of Aizu, Japan, 2003, pp.200-205

N.G. Zagoruiko, N.A. Kolchanov, A.G. Pichueva, O.A. Kutnenko, I.A. Borisova, A.V. Kochetov, V.A. Ivanisenko, S.V. Nikolaev, V.A. Likhoshvai, and A.V. Ratushnyi. Data Mining Techniques in Bioinformatics. Pattern Recognition and Image Analysis, Vol. 13, No. 4, 2003, pp. 550√555.

2002:

Ratushny A.V., Lihoshvai V.A., Ignatieva E.V., Matushkin U.G., Kolchanov N.A. Computer Modeling of gene Network: the Action of Mutations. In: Molecular Genetics, Biophysics, and Medicine To-day (Bresler Memorial Lectures)/ ed. V.A. Lanzov, PNPI Press, ST.Petersburg / Gatchina, 2002, pp.169-184. [in Russian].

Kolchanov N.A. Nedosekina E.A., Ananko E.A., Likhoshvai V.A., Podkolodny N.L., Ratushny A.V., Stepanenko I.L., Podkolodnaya O.A., Ignatieva E.V., Matushkin Yu.G. GeneNet Database: Description and modeling of Gene Networks. In SilicoBiology 2 (2002), pp. 97-110.

Ratushny A.V., Likhoshvai V.A. (2002) Computer analysis of the effects of mutations in LDL receptor gene on the regulation of cholesterol biosynthesis in the cell. Proc. of the 3rd Intern. Conference on Bioinformatics of Genome Regulation and Structure, Novosibirsk, Russia, Vol. 2, pp. 150-153.

Ratushny A.V., Likhoshvai V.A., Kolchanov N.A. (2002) Analysis of mutational portraits of gene networks. Proc. of the 3rd Intern. Conference on Bioinformatics of Genome Regulation and Structure, Novosibirsk, Russia, Vol. 2, pp. 157-159.

Ratushny A.V., Likhoshvai V.A., Matushkin Yu.G., Kolchanov N.A. (2002) Evolution of diploid gene network of cholesterol biosynthesis regulation in the cell. Proc. of the 3rd Intern. Conference on Bioinformatics of Genome Regulation and Structure, Novosibirsk, Russia, Vol. 2, pp. 160-162.

Borisova I.A., Zagoruiko N.G., KolchanovN.A., Likhoshvai V.A., Ratushny A.V., Likhoshvai V.A., Matushkin Yu.G., Kolchanov N.A. (2002) Diagnosticof mutations based on analysis of gene networks. Proc. of the 3rd Intern. Conference on Bioinformatics of Genome Regulation and Structure, Novosibirsk, Russia, Vol. 2, pp. 163-165.

Latypov A.F., Nikulichev Yu.V., Likhoshvai V.A., Ratushny A.V., Matushkin Yu.G., Kolchanov N.A. (2002) Problems of control of gene networks in space of stable states. Proc. of the 3rd Intern. Conference on Bioinformatics of Genome Regulation and Structure, Novosibirsk, Russia, Vol. 2, pp. 195-198.

Latypov A.F., Nikulichev Yu.V., Likhoshvai V.A., Ratushny A.V., Matushkin Yu.G., Kolchanov N.A. (2002) A method of solving problems of optimal control in dynamics of gene networks. Proc. of the 3rd Intern. Conference on Bioinformatics of Genome Regulation and Structure, Novosibirsk, Russia, Vol. 2, pp. 199-202.

Kolchanov N.A. Podkolodny N.L., Likhoshvai V.A., Loktev K.A., Ananko E.A., Ignatieva E.V., Podkolodnaya O.A., Stepanenko I.L., Nedosekina E.A., Matushkin Yu.G., Ratushny A.V., Tkachev Yu.A., Borisova I.A., Zagoruiko N.G., Dobrynin A.A., Makarov L.I., Fadeev S.I., Gainova I.A., Latypov A.F., Nikulichev Yu.V. (2002) Computer systemic biology: informational and software tools for complex molecular biological systems. Proc. of the 3rd Intern. Conference on Bioinformatics of Genome Regulation and Structure, Novosibirsk, Russia, Vol. 2, pp. 140-142.

Likhoshvai V.A., Latypov A.F., Nedosekina E.A., Ratushny A.V., Podkolodny N.L. (2002) Technology of using experimental data for verification of models of gene network operation dynamics. Proc. of the 3rd Intern. Conference on Bioinformatics of Genome Regulation and Structure, Novosibirsk, Russia, Vol. 2, pp. 146-149.

Fadeev S.I., Berezin A.Yu., Gainova I.A., Kogai V.V., Ratushny A.V., Likhoshvai V.A. (2002) Development of the program software for mathematic modeling of the gene network dynamics. Proc. of the 3rd Intern. Conference on Bioinformatics of Genome Regulation and Structure, Novosibirsk, Russia, Vol. 2, pp. 173-175.

Zagoruiko N.G., Pichueva A.G., Kutnenko O.A., Borisova I.A., Kochetov A.V., Ivanesenko V.A., Nikolaev S.V., Likhoshvai V.A., Ratushny A.V., Kolchanov N.A. (2002) Computer systemic biology: informational and software tools for complex molecular biological systems. Proc. of the 3rd Intern. Conference on Bioinformatics of Genome Regulation and Structure, Novosibirsk, Russia, Vol. 3, pp. 204-207.

Kolchanov N.A. Podkolodny N.L., Ananko E.A., Ignatieva E.V., Podkolodnaya O.A., Stepanenko I.L., Merkulova T.I., Lavryushev S.V., Grigorovich D.A., Kochetov A.V., Orlova G.V., Titov I.I., Vishnevsky O.V., Orlov Yu.L., Ivanesenko V.A., Vorobiev D.G., Oshchepkov D.Yu., Omelyanchuk N.A., PozdnyakovM.A., afonnikov D.A., Matushkin Yu.G., Likhoshvai V.A., Ratushny A.V., Katokhin A.V., Turnaev I.I., Proskura A.L., Suslov V.V., Nedosekina E.A. (2002) GeneExpress-2002: an integrated system on gene expression regulation. Proc. of the 3rd Intern. Conference on Bioinformatics of Genome Regulation and Structure, Novosibirsk, Russia, Vol. 3, pp. 232-234.

2001:

Likhoshvai V.A., Matushkin Iu.G., Ratushnyi A.V., Anan'ko E.A., Ignat'eva E.V., Podkolodnaia O.A. [A generalized chemical-kinetic method for modeling gene networks] Mol. Biol. (Mosk), 2001, Nov-Dec;35(6): 1072-9. [Article in Russian].

2000:

Ratushny A.V., Ignatieva E.V., Matushkin Yu.G., Likhoshvai V.A. (2000) Мathematical model of cholesterol biosynthesis regulation in the cell. Proc. of the 2nd Intern. Conference on Bioinformatics of Genome Regulation and Structure, Novosibirsk, Russia, Vol. 1, pp. 199-202.

Ratushny A.V., Podkolodnaya O.A., Ananko E.A., Likhoshvai V.A. (2000) Mathematical model of erythroid cell differentiation regulation. Proc. of the 2nd Intern. Conference on Bioinformatics of Genome Regulation and Structure, Novosibirsk, Russia, Vol. 1, pp. 203-206.

Ignatieva E.V., Likhoshvai V.A., Ratushny A.V., Kosarev P.S. (2000) Knowledge base on molecular-genetical foundations of lipid metabolism regulation: current state and perspective. Proc. of the 2nd Intern. Conference on Bioinformatics of Genome Regulation and Structure, Novosibirsk, Russia, Vol. 1, pp. 54-57.

2005:

Ratushny A.V., Likhoshvai V.A., T.M. Khlebodarova, N.V. Apasyeva. Molecular-genetic mechanisms of prokaryotic cell respiration: gene network reconstruction and mathematical modeling. Proceedings of the International Moscow Conference on Computational Molecular Biology, Moscow, Russia, July 18-21, 2005, pp. 319-320.

Ratushny A.V., Likhoshvai V.A. (2005) Mathematical and computer modelling of molecular genetic network controlling intracellular cholesterol homeostasis. // 4^th European Conference on Computational Biology (ECCB 2005), Programme and abstracts book, p. 114.

2004:

Ratushny A.V., Likhoshvai V.A., Ignatieva E.V., Kolchanov N.A. (2004) Robustness of key components of homeostatic gene networks to a wide range of mutations. // The 12^th International Conference on Intelligent Systems for Molecular Biology (ISMB 2004) and 3^rd the European Conference on Computational Biology (ECCB 2004), Conference programme, p. 219.

Ratushny A.V., Likhoshvai V.A., Ignatieva E.V., Kolchanov N.A. (2004) Robustness of homeostatic gene networks target products to a wide range of mutations and perturbations in the cell. // ISMB 2004 and ECCB 2004 Satellite Meeting, Special Interest Group in Simulations and Modelling, Book of abstracts, p. 29.

Ratushny A.V., Likhoshvai V.A., Ignatieva E.V., Kolchanov N.A. Robustness of intracellular cholesterol content to a wide range of perturbations in the cell. // Abstracts from the FEBS Special Meeting: 45th International Conference on the Bioscience of Lipids - May 25-29, Ioannina, Greece, Chemistry and Physics of Lipids, 2004 130(1), p. 81.

2003:

Ratushny A.V., Likhoshvai V.A., Matushkin Y.G., Kolchanov N.A., Borisova I.A., Zagoruiko N.G. Computer analysis of mutations and evolution of gene networks. Proceedings of the International Moscow Conference on Computational Molecular Biology, Moscow, Russia, July 22-25, 2003, pp. 198-199.

Kolchanov N.A., Likhoshvai V.A., Ananko E.A., Stepanenko I.L., Podkolodnaya O.A., Ignatieva E.V., Ratushny A.V., Nedosekina E.A., Podkolodny N.L. GeneNet Discovery: Gene Networks Reconstruction, Analysis and Modeling. Proceedings of the International Moscow Conference on Computational Molecular Biology, Moscow, Russia, July 22-25, 2003, pp. 109-111.

Ratushny A.V., Likhoshvai V.A., Borisova I.A., Zagoruiko N.G., Matushkin Y.G., Kolchanov N.A. Theoretical study of mutations and evolution of gene networks. Proceedings of the European Conference on Computational Biology in conjunction with the French National Conference on Bioinformatics (JOBIM 2003), Paris, France, September 27-30, 2003, pp. 579-580.

Ratushny A.V., Likhoshvai V.A., Kolchanov N.A. Theoretical Study of Homeostatic and Developmental Gene Networks Dynamics. Proceedings of the International Conference on Pathways, Networks, and Systems: Theory and Experiments, September 28 - October 2, 2003 Santorini, Greece, p. 67.

Ratushny A.V., Likhoshvai V.A., Kolchanov N.A. Computer dynamic modeling and theoretical investigation of homeostatic and developmental gene networks. Proceedings of the German Conference on Bioinformatics, October 12-14, 2003, Neuherberg/Garching near Munich. 

Н.Г. Загоруйко, А.Г. Пичуева, О.А. Кутненко, И.А. Борисова, А.В. Кочетов, В.А. Иванисенко, С.В. Николаев, В.А. Лихошвай, А.В. Ратушный, Н.А, Колчанов. Информационные технологии в генетике. Труды Международной конференции "Информационные системы и технологии" ИСТ'2003, т. 3, стр. 136 - 139, Новосибирск, 2003 г.

Latypov A.F., Nikulichev Yu.V., Likhoshvai V.A., Ratushny A.V., Matushkin Yu.G., Kolchanov N.A. Problems of Control of Gene Networks in a Space of Stable States. Proc. IFAC Workshop ⌠Modelling and Analysis of Logic Controlled Dynamic Systems■, Irkutsk, Russia, 2003, p.251-266

2002:

Ratushny A.V., Likhoshvai V.A., Ignatieva E.V., Kolchanov N.A. (2002) Analysis of the influence of mutations in the gene network regulating cholesterol synthesis in the cell. // Abstracts from the 43rd International Conference on the Bioscience of Lipids - September 11-14, Graz, Austria, Chemistry and Physics of Lipids 118 (1-2), pp. 61 - 62.

Ratushny A.V., Likhoshvai V.A., Ignatieva E.V., Ananko E.A., Podkolodnaya O.A., Matushkin Y.G., Kolchanov N.A. (2002) Computer dynamic modeling of gene networks and the analysis of the action of mutations. // 10^th International Conference on Intelligent Systems for Molecular Biology, Conference program, p. 107.

Ratushny A.V., Likhoshvai V.A., Ignatieva E.V., Ananko E.A., Podkolodnaya O.A., Matushkin Y.G., Kolchanov N.A. (2002) Computer dynamic modeling of gene networks and the analysis of the action of mutations. // ISMB Satellite Meeting on Computer Modeling of Cellular Processes, special Interest Group for Biological simulation, Book of abstracts, p. 2.

2001:

Ananko E.A., Ignatieva E.V., Nedosekina E.A., Suslov V.V., Podkolodnaya O.A., Ratushny A.V., Stepanenko I.L., Kolchanov N.A. (2001) Gene Networks. The conference devoted to a 90-anniversary from Alexey Andreevich Ljapunov's birthday. The program and summaries of reports / Novosibirsk, Academgorodok, p. 22.

Ananko E.A., Ignatieva E.V., Suslov V.V., Nedosekina E.A., Podkolodnaya O.A., Ratushny A.V., Stepanenko I.L., Kolchanov N.A. (2001) Classification of gene networks on the basis of the information from GeneNet database. The conference devoted to a 90-anniversary from Alexey Andreevich Ljapunov's birthday. The program and summaries of reports / Novosibirsk, Academgorodok, p. 22.

Likhoshvai V.A., Matushkin Yu.G., Ratushny A.V., Ananko E.A., Ignatieva E.V., Podkolodnaya O.A. (2001) Classification of gene networks on the basis of the information from GeneNet database. The conference devoted to a 90-anniversary from Alexey Andreevich Ljapunov's birthday. The program and summaries of reports / Novosibirsk, Academgorodok, p. 22.

Likhoshvai V.A., Matushkin Yu.G., Ratushny A.V., Ananko E.A., Ignatieva E.V. Podkolodnaya O.A. (2001) Genic networks modeling by means of the generalized chemical kinetic method.  The conference devoted to a 90-anniversary from Alexey Andreevich Ljapunov's birthday. The program and summaries of reports / Novosibirsk, Academgorodok, pp. 22-27.

Podkolodnaya N.N., Ratushny A.V. (2001) Modeling and visualization system of gene networks dynamics. Materials of XXXIX International Scientific Student's Conference "The Student and Scientific and Technical Progress": Information technologies / Novosibirsk State University, Novosibirsk, pp. 99-100.

2000:

Ananko E.A., Likhoshvai V.A., Kolpakov F.A., Podkolodny N.L., Ratushny A.V., Ignatieva E.V., Podkolodnaya O.A., Stepanenko I.L., Kolchanov N.A. (2000) GeneNet electronic library: the description and modeling of gene networks of animals and plants. Electronic libraries: perspective methods and technologies, electronic collections. The Proceedings of the Second All-Russian Scientific Conference, September 26-28, Protvino, Russia, pp. 66-72.

Ratushny A.V., Ignatieva E.V., Podkolodnaya O.A., Ananko E.A., Likhoshvai V.A. (2000) Mathematical modeling of genic networks dynamics. Modeling of Nonequilibrium Systems. Materials of III All-Russian Seminar, October 20-22, Krasnoyarsk, Russia, pp. 200-201.

Ratushny A.V. (2000) Mathematical model of erythroid cell differentiation regulation. Materials of XXXVIII International Scientific Student's Conference "The Student and scientific and Technical Progress": Biology / Novosibirsk State University, Novosibirsk, pp. 91-92.