MatrixSS: Building E-score plot for RNA sequence

Here an example is shown, where we search for the tRNA Ser sequence (of 82 nt in length) which is present in the sequence extracted from the EMBL databank (ID AF184043). The total length of this sequence is 400 nt. The tRNA Ser gene is located in-between positions 218 - 299 nt. :

Input RNA sequence :

Window size for E-score profile:


Institute of Cytology and Genetics

This resource was developed at the Institute of Cytology and Genetics, Novosibirsk, Russia

Authors: Denis G. Vorobiev, Igor I. Titov
Other contributors: Vladimir A. Ivanisenko, Nikolay A. Kolchanov