Recognizing the NF1 transcription factor binding site by consensus

Input DNA Sequence :
from Screen:

from DB: Bases Available:
from File:
File formats here.


 

N Method Weight (0-10 are valid) Offset (-1.0~1.0 are valid)
1. NF1: 1bp-Consensus of the alphabet {A,T,G,C}

2.  NF1: 2bp-Consensus of the alphabet {A,T,G,C}

3. NF1: 3bp-Consensus of the alphabet {A,T,G,C}

4.  NF1: 3bp-Consensus of the alphabet {A,T,G,C & X}
5. NF1: 5bp-Consensus of the alphabet {A,T,G,C & X}
6.  NF1: 2bp-Consensus of the alphabet {M=A+C, K=T+G}
7. NF1: 3bp-Consensus of the alphabet {M=A+C, K=T+G}
8. NF1: 4bp-Consensus of the alphabet {M=A+C, K=T+G}
9. NF1: 3bp-Consensus of the alphabet {M=A+C, K=T+G, & X}
10. NF1: 5bp-Consensus of the alphabet {M=A+C, K=T+G, & X}
11. NF1: 2bp-Consensus of the alphabet {R=A+G, Y=T+C}
12. NF1: 3bp-Consensus of the alphabet {R=A+G, Y=T+C}
13. NF1: 4bp-Consensus of the alphabet {R=A+G, Y=T+C}
14. NF1: 3bp-Consensus of the alphabet {R=A+G, Y=T+C, & X}
15. NF1: 5bp-Consensus of the alphabet {R=A+G, Y=T+C, & X}
16. NF1: 2bp-Consensus of the alphabet {W=A+T, S=G+C}
17. NF1: 3bp-Consensus of the alphabet {W=A+T, S=G+C}
18. NF1: 4bp-Consensus of the alphabet {W=A+T, S=G+C}
19. NF1: 3bp-Consensus of the alphabet {W=A+T, S=G+C, & X}
20. NF1: 5bp-Consensus of the alphabet {W=A+T, S=G+C, & X}

Institute of Cytology and Genetics

This resource has been developed in Institute of Cytology and Genetics. Novosibirsk, Russia

Authors: Misha Ponomarenko, Anatoly Frolov, Julia Ponomarenko
Contributor: Olga Podkolodnaya
Leader: N.A. Kolchanov