CRASP
Correlation analysis of
protein sequences


ANALYSIS OF PAIR POSITIONAL CORRELATIONS
(advanced setup example)

 

OVERVIEW

POSITION PAIR ANALYSIS      Integral characteristics analysis      Data Examples     Related papers     Help Info      Feedback

Sequence alignment data:
Load from screen:
 
 Load from file:  
Format
Calculation parameters setup:
Amino Acid Quantity:
AAindex number
Type of matrix:
Variability threshold:
Gap number threshold: (%)
Selected sequence #
First AA number
Position indexing type 
Weights setup:

Option:

Tree in (*.ph) format or User Weights:
Load from screen:

Load from file:   

Separator:


Output parameters setup:

(%)


Optional parameters setup

Clustering highly correlated positions:

Show rearranged matrix:
Clustering cutoff value:

Detecting regions of high density of significant correlation:
Window size:
Correlation threshold:
Correlation sign:
Significance level: (%)