Predicting High/Low mRNA expression of a dicot plant gene

Input DNA Sequence :
from Screen:

from DB: Bases Available:
from File:
File formats here.

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Expert Weights (0-10 are valid)
1.    Translation INCREASES with DECREASING the Leader length
2.  Translation INCREASES with DECREASING [T] content
3.  Translation INCREASES with INCREASING [A]:[T] ratio
4.  Translation INCREASES with DECREASING [A]:[T] disbalance
5.  Translation INCREASES with DECREASING [AUG] content
6.  Translation INCREASES with DECREASING [AUG] framed
7.  Translation INCREASES with DECREASING [AUG] optimized
8.  Translation INCREASES depends on the "-3 position" rule
9.  Translation INCREASES with DECREASING [AUG] "-3"-ruled
10. Translation INCREASES with INCREASING [MM] content of [-17;-1]
11. Translation INCREASES with INCREASING High-consensus matches
12. Translation INCREASES with DECREASING Low-consensus matches
13. Translation INCREASES with INCREASING High-ShortFreqMatr
14. Translation INCREASES with INCREASING High/Low 1bp-FreqRatio
15. Translation INCREASES with INCREASING High/Low 2bp-FreqRatio
16. Translation INCREASES with INCREASING High/Low 3bp-FreqRatio
17. Translation INCREASES with INCREASING High/Low 1bp(KM)-FreqRatio
18. Translation INCREASES with INCREASING High/Low 2bp(KM)-FreqRatio
19. Translation INCREASES with INCREASING High/Low 3bp(KM)-FreqRatio
20. Translation INCREASES with INCREASING High/Low 4bp(KM)-FreqRatio
21. Translation INCREASES with INCREASING High/Low 5bp(KM)-FreqRatio
22. Translation INCREASES with INCREASING High/Low 6bp(KM)-FreqRatio
23. Translation INCREASES with INCREASING High/Low 3bp(ATGCx)FreqRatio
24. Translation INCREASES with INCREASING High/Low 5bp(ATGCx)FreqRatio
25. Translation INCREASES with INCREASING High/Low 3bp(KxM)-FreqRatio
26. Translation INCREASES with INCREASING High/Low 5bp(KxM)-FreqRatio
27. Translation INCREASES with INCREASING High/Low 7bp(KxM)-FreqRatio

Prediction will be the mean value of the Expert estimates with their weights


ICG_LOGO.GIF (658 bytes)Molecular Biological Server

This resource has been developed in the Institute of Cytology and Genetics, Novosibirsk, Russia

Author AV.Kochetov
Contributors:Misha Ponomarenko, Anatoly Frolov,
Leader: Nikolay A. Kolchanov

Collaboration: L.L. Kisselev (Moscow)