Genome sequence

Size, bp

Mean component size

Maximal repeat length

Maximal repeat type

Bacteria

 

 

 

 

A.aeolicus

1551335

11

5274

I

A.aureus MU50

2878040

11.74

6714

D

A.tumefaciens circ. (Cereon)

2841581

11.4

4763

I

A.tumefaciens circ. (UWASH)

2841490

11.4

6743

I

A.tumefaciens lin. (Cereon)

2074782

11.14

1706

D

A.tumefaciens lin. (UWASH)

2075560

11.14

1706

D

A.tumefaciens plasm. AT (Cereon)

542869

9.89

112

D

A.tumefaciens plasm. AT (UWASH)

542779

9.89

112

D

A.tumefaciens.plasm. Ti (Cereon)

214233

9.14

85

D

A.tumefaciens.plasm. Ti (UWASH)

214233

9.14

85

D

Buchnera sp.

640681

10.82

29

D

B.anthracis str. Ames

5227293

11.99

4651

D

B.aphidicola str. Sg (Schizaphis graminum)

641454

10.94

69

D

B.bronchi

5339179

12.63

14420

I

B.burgdorferi

910681

11.02

1438

D

B.cereus

5411809

12.09

5022

D

B.floridanus

705557

10.76

277

D

B.halodurans

4202353

11.79

5283

D

B.japonicum

9105828

12.71

2869

I

B.longum

2256646

11.33

3484

I

B.melitensis (chr I)

2117136

11.17

3603

D

B.melitensis (chr II)

1177785

10.63

1239

I

B.paraper

4773551

12.56

6073

D

B.pertussis

4086189

13.11

6202

I

B.subtilis

4214814

11.55

2957

D

B.suisIchr

2107792

11.18

6286

D

B.suisIIchr

1207381

10.65

1218

I

B.thetaiotamicron

6260361

11.86

5913

I

C.acetobutylicum

3940880

12.11

4794

D

C.burnetti

1995275

11.15

1500

D

C.caviae

1173390

10.56

1978

I

C.crescentus

4016947

12.25

4075

D

C.glutamicum

3309400

11.37

3638

D

C.jejuni

1641481

11.61

6089

D

C.muridarum

1069393

10.48

1050

D

C.perfringens

3031430

12.21

2147

D

C.pneumoniae

1230230

10.59

1371

D

C.pneumoniae AR39

1229784

10.59

1745

D

C.pneumoniae CWL029

1230230

10.59

1371

D

C.pneumoniae J138

1228266

10.57

1300

D

C.tepidum

2154939

11.16

3403

I

C.tetani

2799251

12.11

3863

I

C.trachomatis

1042519

10.45

4909

D

C.violacium

4751080

12.39

5474

D

D.radiodurans (chr.1)

2648577

11.95

1767

I

D.radiodurans (chr.2)

412344

10.22

535

D

E.coli CFT073

5231148

11.86

5631

D

E.coli K12

4639221

11.7

3027

D

E.coli O157 H7

5468733

12.25

41784

D

E.coli O157 H7 RIMD

5498450

12.18

9439

I

E.faecal

3218031

11.58

5285

I

F.nucleatum

2174499

12.25

6527

I

G.violaceus

4659019

11.88

1671

D

H.ducreyi

1698955

11.32

12546

D

H.hepaticus

1799146

11.25

1680

D

H.influenzae

1830023

11.28

5796

I

H.pylori 26695

1667825

11.44

4852

I

H.pylori J99

1643831

11.3

4051

D

L.innocua

3011208

11.57

10989

I

L.interrogans (chr.I)

4332241

12.33

1897

D

L.interrogans (chr.II)

358943

10.12

1110

I

L.lactis

2365589

11.72

5307

I

L.monocytogenes

2944528

11.43

5547

D

L.plantarum

3308274

11.38

2960

D

M.gallisepticum

996422

11.43

2412

D

M.genitalium

580074

10.66

243

D

M.leprae

3268203

11.45

2401

D

M.loti

7036074

12.32

6140

D

M.penetrans

1358633

11.99

2352

I

M.pneumoniae

816394

10.85

470

D

M.pulmonis

963879

11.58

1581

D

M.tuberculosis

4411529

12.08

1697

D

Nostoc.sp

6413771

11.99

3453

I

N.europaea

2812094

11.46

7510

D

N.meningitidis MC58

2272351

12.26

32158

D

N.meningitidis Z2491

2184406

11.97

6154

I

O.iheyensis

3630528

11.69

9455

D

P.aeruginosa

6264403

12.6

5304

I

P.luminescens

5688987

12.4

8846

D

P.multocida

2257487

11.21

3907

I

Rhizobium.sp

536187

10.3

4246

D

R.conorii

1268755

11.06

647

D

R.prowazekii

1111523

10.99

494

D

Synechocystis PCC6903

3573470

11.57

5361

I

S.agalactiae NEM316

2211485

11.83

47069

I

S.agalactiae TIGR

2160267

11.42

5752

D

S.aureus MW2

2820462

11.68

3274

I

S.aureus N315

2814816

11.79

6714

D

S.avermitilis

9025608

13.08

5257

I

S.coelicolor

8667507

13.26

11677

I

S.enterica Ty2

4791950

11.7

6299

D

S.enterica Typhi

4809037

11.72

7828

I

S.epidermis

2499279

11.69

2274

D

S.flexneri str.2457T

4599326

12.33

5169

D

S.flexneri str.301

4607197

12.43

13489

I

S.meliloti

3654135

11.92

6577

I

S.mutans

2030921

11.28

5786

D

S.oneidensis MR1

4969795

12.03

5209

I

S.pneumoniae R6

2038615

11.29

5911

D

S.pneumoniae (TIGR)

2160837

11.56

5985

D

S.pyogenes MGAS8232

1895017

11.26

6201

I

S.pyogenes SF370

1852441

11.15

4107

I

S.pyogenes SSI1

1894275

11.19

5440

D

S.typhimurium

4857432

11.71

5214

I

T.elongatus

2593857

11.48

3228

D

T.maritima

1860725

11.01

921

D

T.pallidum

1137944

10.5

3283

D

T.tengcongensis

2689445

12.02

2041

D

T.whipplei

927303

10.61

4001

D

U.urealyticum

751719

11.23

1452

D

V.cholerae.chrI

2961116

11.29

3981

D

V.cholerae.chrII

1072311

10.71

1261

D

V.parahaemolyticus (chr.1)

3288558

11.39

5142

D

V.parahaemolyticus (chr.2)

1877212

10.82

721

D

V.vulnificicus (chr.1)

3281945

11.46

3968

D

V.vulnificicus (chr.2)

1844853

10.76

1431

D

W.brevipalpis

697721

11.44

4823

I

W.succinogenes

2110355

11.31

6195

D

X.axonopodis

5175554

12.24

5598

D

X.campestris

5076172

12.37

5698

D

X.fastidiosa

2679305

11.43

14317

D

X.fastidiosa Temecula1

2519802

11.42

7465

D

Y.pestis CO92

4653728

11.97

3159

D

Y.pestis KIM

4600755

11.91

5353

I

Archaebacteria

 

 

 

 

A. pernix K1

1669695

10.84

1045

I

A. fulgidus

2178400

11.11

1215

D

Halobacterium sp. NRC-1

2014239

11.69

1404

I

M. acetivorans str. C2A

5751492

12.4

2485

D

M. jannaschii

1664957

11.56

1018

I

M. kandleri AV19

1694969

10.93

302

I

M. mazei strain Goe1

4096345

11.86

1884

I

M. thermoautotrophicum delta H

1751377

10.96

1856

D

P. abyssi

1765118

10.85

873

I

P.aerophilum strain IM2

2222430

11.08

1295

D

P. furiosus DSM 3638

1908256

11.11

1350

D

P. horikoshii OT3

1738505

10.92

623

I

S. solfataricus

2992245

12.35

6521

I

S. tokodaii

2694765

11.76

1460

I

T. acidophilum

1564906

10.62

654

D

T. volcanium

1584804

10.79

809

I

Note: Repeat type (right column): D=Direct    I=Inverted

 

Maximal genome size: 9.1 Mb Bradyrhizobium japonicum, strain USDA110

Maximal repeat length: 47Kb, Streptococcus agalactiae, strain NEM316 (reference) This is inverted repeat.

 

Genome size and mean component length in decomposition (complexity) have logarithm correlation (0.83) (Statistically significant, at level 0.047). The genome sequences for analysis were downloaded from NCBI server in October 2003.