Complexity decomposition of genetic texts by modified Lempel-Ziv method

DNA   Standard alphabet {A,T,G,C}                       

Reduced DNA alphabets:   Weak/Strong  [AT][GC] Purine/Pyrimidine  [AG][TC]        

Input sequence(s) here (FASTA format or plain text) (cut & paste)

or from File:

Calculation method:

profile - complexity in sliding window (default)

Profile parameters: Sliding window size    Profile step (shift of sliding window)

Decompose whole file by repeated fragments (sequences joined)   

Decompose each sequences in file separately       

Complexity decomposition of sequence(s) by other sequence(s)

 (second file required, input it below) 

  Input sequences here (FASTA format or plain text) (cut & paste)

or from File:

    Copying operations while sequence generation using:

Repeats: Direct Copy     Symmetric Copy

Complementary repeats:  Invert Copy     Direct Complementary Copy

    Output parameters:

No decomposition report (only complexity value, by default)

full detailed report (all components of decomposition)

economic report  (selected long components only) Show sequence in frame in 'economic' report if its complexity <      

statistical report (statistics of components lengths)  

User-defined length of long repeats >

(for economic and statistical reports)