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Dinucleotide property          Twist (Calculated by Sklenar, and averaged by Ponomarenko) Rise (Calculated by Sklenar, and averaged by Ponomarenko) Bend (Calculated by Sklenar, and averaged by Ponomarenko) Tip (Calculated by Sklenar, and averaged by Ponomarenko) Inclination (Calculated by Sklenar, and averaged by Ponomarenko) Major groove width (Calculated by Sklenar, and averaged by Ponomarenko) Major groove depth (Calculated by Sklenar, and averaged by Ponomarenko) Minor groove width (Calculated by Sklenar, and averaged by Ponomarenko) Minor groove depth (Calculated by Sklenar, and averaged by Ponomarenko) Roll (Averaged for X-rays) Twist (Averaged for X-rays) Tilt (Averaged for X-rays) Slide (Averaged for X-rays) Roll (Averaged for X-rays in DNA/protein complex) Twist (Averaged for X-rays in DNA/protein complex) Tilt (Averaged for X-rays in DNA/protein complex) Slide (Averaged for X-rays in DNA/protein complex) Twist (Regressed for X-rays) Wedge (Regressed for X-rays) Regresson (Regressed for X-rays) Persistence length (Experimental) Melting temperature (Experimental) Probability to be contacting with a nucleosome core (Experimental) Mobility to bend towords major groove (Experimental) Mobility to bend towords minor groove (Experimental) Twist (Averaged for the X-ray centers) Tilt (Averaged for the X-ray centers) Roll (Averaged for the X-ray centers) Slide (Averaged for the X-ray centers) Propeller (Averaged for the X-ray centers) Minor groove size (Averaged for the X-ray centers) Minor groove dist (Averaged for the X-ray centers) Major groove size (Averaged for the X-ray centers) Major groove dist (Averaged for the X-ray centers) Clash strength (Averaged for the X-ray centers) Enthalpy change Entropy change Free energy change

Output parameters setup:

Type of output:     Significant pairs (*.gif) Matrix color diagram (*.gif) ASCII text file HTML table

Significance level: 95% 99% 99.9% 99.99%

Widow size: