|POL III PROMOTER RECOGNITION: brief description of the computer program POLIIISCAN.|
The algorithm used in the computer program POLIIISCAN
is described in paper:
"THE RELATION BETWEEN THE STRUCTURE OF THE tRNA GENE PROMOTERS AND tRNA AMINO ACID SPECIFICITY"
Y.V.Kondrakhin (*), I.B.Rogozin, T.M.Naykova, N.S.Yudin, M.I.Voevoda, A.G.Romaschenko.
(*): E.mail address is firstname.lastname@example.org
Animal Molecular Genetics Laboratiry , Institute of Cytology and genetics, Novosibirsk, Russia.
This paper is submitted to the BIOINFORMATICS.
A new method for the recognition of type 2 promoters in the eukaryotic tRNA genes, which takes into consideration not only nucleotide distribution at individual box positions, but also the multiple interactions between the different parts of the boxes is proposed. The recognition system is determined by the module organization of the A and B boxes within intragenic promoters of the tRNA genes.
Author: Y.V.Kondrakhin, I.B.Rogozin, T.M.Naykova, N.S.Yudin,
Contributors: Sergey V. Lavryushev
© 1997-2001, IC&G SB RAS, Laboratory of Theoretical Genetics