SELEX_DB: In vitro randomized/selected oligoDNAs binding to the AHR/ARNT-heterodimer, (without core fixed)

Input DNA Sequence :
from Screen:

from DB: Bases Available:
from File:
File formats here.

Select one of 18 AHR-site recognition model listed below:

(A) Fifteen AHR-binding site recognitions optimized over the AHR SELEXed data:

AHR: Frequency matrix for Homology Score
AHR: Frequency matrix for Information content
AHR: Frequency matrix for Matrix similarity
AHR: Frequency matrix for Sensibility score
AHR: Frequency matrix for Fisher's Linear Discriminant
AHR: Frequency matrix for Free energy change
AHR: Frequency matrix for Chance amount
AHR: Consensus with Homology Score
AHR: Consensus with Information content
AHR: Consensus with Matrix similarity
AHR: Consensus with Sensibility score
AHR: Consensus with Fisher's Linear Discriminant
AHR: Consensus with Free energy change
AHR: Consensus with Chance amount
AHR: Mean Recognition Score

(B) Three additional TF-site recognition procedutes adapted to the others ARH-related SELEXed data:

AHR: OligoDNA's SELEXed by [Ah+ARNT]-receptor complex
AHR: OligoDNA's SELEXed by ARNT-homodimer
AHR: OligoDNA's SELEXed by [SIM+(ARNT-homodimer)]-complex

The Institute of Cytology and Genetics (Russia)

This resource has been developed in collaboration between
The Institute of Cytology and Genetics (Novosibirsk, Russia) and The Institute of Physical and Chemical Research, RIKEN (Thukuba, Japan)
that was supported by RFBR grant #98-07-90126 (Russia) and STA Fellow #499042 (Japan)

Author: Julia Ponomarenko, Galine Orlova, Sergey Lavrushev, Svetlana Zybova,
Misha Ponomarenko, Anatoly Frolov,

Supervisors: Nikolay Kolchanov, Prof. and Akinori Sarai, Prof.