SELEX_DB: In vitro randomized/selected oligoDNAs binding to the ARNT/ARNT-homodimer, (without core fixed)

Input DNA Sequence :
from Screen:

from DB: Bases Available:
from File:
File formats here.

Select one of 18 ARNT-site recognition model listed below:

(A) Fifteen ARNT-binding site recognitions optimized over the ARNT SELEXed data:

ARNT: Frequency matrix for Homology Score
ARNT: Frequency matrix for Information content
ARNT: Frequency matrix for Matrix similarity
ARNT: Frequency matrix for Sensibility score
ARNT: Frequency matrix for Fisher's Linear Discriminant
ARNT: Frequency matrix for Free energy change
ARNT: Frequency matrix for Chance amount
ARNT: Consensus with Homology Score
ARNT: Consensus with Information content
ARNT: Consensus with Matrix similarity
ARNT: Consensus with Sensibility score
ARNT: Consensus with Fisher's Linear Discriminant
ARNT: Consensus with Free energy change
ARNT: Consensus with Chance amount
ARNT: Mean Recognition Score

(B) Three additional TF-site recognition procedutes adapted to the others ARNT-related SELEXed data:

ARNT: OligoDNA's SELEXed by Ah-receptor
ARNT: OligoDNA's SELEXed by [Ah+ARNT]-heterodimer
ARNT: OligoDNA's SELEXed by [SIM+(ARNT-homodimer)]-complex

The Institute of Cytology and Genetics (Russia)

This resource has been developed in collaboration between
The Institute of Cytology and Genetics (Novosibirsk, Russia) and The Institute of Physical and Chemical Research, RIKEN (Thukuba, Japan)
that was supported by RFBR grant #98-07-90126 (Russia) and STA Fellow #499042 (Japan)

Author: Julia Ponomarenko, Galine Orlova, Sergey Lavrushev, Svetlana Zybova,
Misha Ponomarenko, Anatoly Frolov,

Supervisors: Nikolay Kolchanov, Prof. and Akinori Sarai, Prof.