SELEX_DB: Dowstream DNA sites binding the hXBP protein (CRE-like)

Input DNA Sequence :
from Screen:

from DB: Bases Available:
from File:
File formats here.

Select one of 20 hXBP-related site with downstream surrounding recognition model listed below:

(A) Fifteen hXBP-site recognition optimized over the hXBP-SELEXed data:

hXBPd: Frequency matrix for Homology Score
hXBPd: Frequency matrix for Information content
hXBPd: Frequency matrix for Matrix similarity
hXBPd: Frequency matrix for Sensibility score
hXBPd: Frequency matrix for Fisher's Linear Discriminant
hXBPd: Frequency matrix for Free energy change
hXBPd: Frequency matrix for Chance amount
hXBPd: Consensus with Homology Score
hXBPd: Consensus with Information content
hXBPd: Consensus with Matrix similarity
hXBPd: Consensus with Sensibility score
hXBPd: Consensus with Fisher's Linear Discriminant
hXBPd: Consensus with Free energy change
hXBPd: Consensus with Chance amount
hXBPd: Mean Recognition Score

(B) Five additional TF-site recognition procedutes adapted to the others CRE-like natural and SELEXed data:

hXBPd: Natural site CREB recognition (CRE-like)
hXBPd: Natural site CRE-BP1 recognition (CRE-like)
hXBPd: Natural site ATF recognition (CRE-like)
hXBPd: OligoDNA's SELEXed for binding the CREB transcription factor (CRE-like)
hXBPd: OligoDNA's SELEXed for binding the Tax/CREB-complex (CRE-like)

The Institute of Cytology and Genetics (Russia)

This resource has been developed in collaboration between
The Institute of Cytology and Genetics (Novosibirsk, Russia) and The Institute of Physical and Chemical Research, RIKEN (Thukuba, Japan)
that was supported by RFBR grant #98-07-90126 (Russia) and STA Fellow #499042 (Japan)

Author: Julia Ponomarenko, Galine Orlova, Sergey Lavrushev, Svetlana Zybova,
Misha Ponomarenko, Anatoly Frolov,

Supervisors: Nikolay Kolchanov, Prof. and Akinori Sarai, Prof.