SELEX_DB: Upstream DNA sites binding the hXBP protein (CRE-like)

Input DNA Sequence :
from Screen:

from DB: Bases Available:
from File:
File formats here.

Select one of 20 hXBP-related site with upstream surrounding recognition model listed below:

(A) Fifteen hXBP-site recognition optimized over the hXBP-SELEXed data:

hXBPu: Frequency matrix for Homology Score
hXBPu: Frequency matrix for Information content
hXBPu: Frequency matrix for Matrix similarity
hXBPu: Frequency matrix for Sensibility score
hXBPu: Frequency matrix for Fisher's Linear Discriminant
hXBPu: Frequency matrix for Free energy change
hXBPu: Frequency matrix for Chance amount
hXBPu: Consensus with Homology Score
hXBPu: Consensus with Information content
hXBPu: Consensus with Matrix similarity
hXBPu: Consensus with Sensibility score
hXBPu: Consensus with Fisher's Linear Discriminant
hXBPu: Consensus with Free energy change
hXBPu: Consensus with Chance amount
hXBPu: Mean Recognition Score

(B) Five additional TF-site recognition procedutes adapted to the others CRE-like natural and SELEXed data:

hXBPu: Natural site CREB recognition (CRE-like)
hXBPu: Natural site CRE-BP1 recognition (CRE-like)
hXBPu: Natural site ATF recognition (CRE-like)
hXBPu: OligoDNA's SELEXed for binding the CREB transcription factor (CRE-like)
hXBPu: OligoDNA's SELEXed for binding the Tax/CREB-complex (CRE-like)

The Institute of Cytology and Genetics (Russia)

This resource has been developed in collaboration between
The Institute of Cytology and Genetics (Novosibirsk, Russia) and The Institute of Physical and Chemical Research, RIKEN (Thukuba, Japan)
that was supported by RFBR grant #98-07-90126 (Russia) and STA Fellow #499042 (Japan)

Author: Julia Ponomarenko, Galine Orlova, Sergey Lavrushev, Svetlana Zybova,
Misha Ponomarenko, Anatoly Frolov,

Supervisors: Nikolay Kolchanov, Prof. and Akinori Sarai, Prof.