SELEX_DB: Synthetic oligoDNA in vitro randomized/selected for binding the AHR/ARNT-heterodimer, (with core "GCGTG" fixed)

Input DNA Sequence :
from Screen:

from DB: Bases Available:
from File:
File formats here.

Select one of 18 hARH-site recognition model listed below:

(A) Fifteen hAHR-binding site recognitions optimized over the hAHR SELEXed data:

hAHR: Frequency matrix for Homology Score
hAHR: Frequency matrix for Information content
hAHR: Frequency matrix for Matrix similarity
hAHR: Frequency matrix for Sensibility score
hAHR: Frequency matrix for Fisher's Linear Discriminant
hAHR: Frequency matrix for Free energy change
hAHR: Frequency matrix for Chance amount
hAHR: Consensus with Homology Score
hAHR: Consensus with Information content
hAHR: Consensus with Matrix similarity
hAHR: Consensus with Sensibility score
hAHR: Consensus with Fisher's Linear Discriminant
hAHR: Consensus with Free energy change
hAHR: Consensus with Chance amount
hAHR: Mean Recognition Score

(B) Three additional TF-site recognition procedutes adapted to the others hARH-related SELEXed data:

hAHR: OligoDNA's SELEXed by Ah-receptor
hAHR: OligoDNA's SELEXed by ARNT-homodimer
hAHR: OligoDNA's SELEXed by [SIM+(ARNT-homodimer)]-complex

The Institute of Cytology and Genetics (Russia)

This resource has been developed in collaboration between
The Institute of Cytology and Genetics (Novosibirsk, Russia) and The Institute of Physical and Chemical Research, RIKEN (Thukuba, Japan)
that was supported by RFBR grant #98-07-90126 (Russia) and STA Fellow #499042 (Japan)

Author: Julia Ponomarenko, Galine Orlova, Sergey Lavrushev, Svetlana Zybova,
Misha Ponomarenko, Anatoly Frolov,

Supervisors: Nikolay Kolchanov, Prof. and Akinori Sarai, Prof.