SELEX_DB: DNA sequence binding bHLH-zip domain of N-Myc protein (E-box like)

Input DNA Sequence :
from Screen:

from DB: Bases Available:
from File:
File formats here.

Select one of 19 N-Myc(bHLH-zip)-related site recognition model listed below:

(A) Fifteen N-Myc-(bHLH-zip)-site recognition optimized over the N-Myc SELEXed data:

N-Myc(bHLH-zip): Frequency matrix for Homology Score
N-Myc(bHLH-zip): Frequency matrix for Information content
N-Myc(bHLH-zip): Frequency matrix for Matrix similarity
N-Myc(bHLH-zip): Frequency matrix for Sensibility score
N-Myc(bHLH-zip): Frequency matrix for Fisher's Linear Discriminant
N-Myc(bHLH-zip): Frequency matrix for Free energy change
N-Myc(bHLH-zip): Frequency matrix for Chance amount
N-Myc(bHLH-zip): Consensus with Homology Score
N-Myc(bHLH-zip): Consensus with Information content
N-Myc(bHLH-zip): Consensus with Matrix similarity
N-Myc(bHLH-zip): Consensus with Sensibility score
N-Myc(bHLH-zip): Consensus with Fisher's Linear Discriminant
N-Myc(bHLH-zip): Consensus with Free energy change
N-Myc(bHLH-zip): Consensus with Chance amount
N-Myc(bHLH-zip): Mean Recognition Score

(B) Four additional TF-site recognition procedutes adapted to the others E-box-like natural and SELEXed data:

N-Myc(bHLH-zip): Natural sites USF (E-box like)
N-Myc(bHLH-zip): OligoDNA's SELEXed for binding the cMyc/Max-dimer (E-box like)
N-Myc(bHLH-zip): OligoDNA's SELEXed for binding the Max/Max-homodimer (E-box like)
N-Myc(bHLH-zip): OligoDNA's SELEXed for binding the ADD/SREBP1-dimer (E-box like)

The Institute of Cytology and Genetics (Russia)

This resource has been developed in collaboration between
The Institute of Cytology and Genetics (Novosibirsk, Russia) and The Institute of Physical and Chemical Research, RIKEN (Thukuba, Japan)
that was supported by RFBR grant #98-07-90126 (Russia) and STA Fellow #499042 (Japan)

Author: Julia Ponomarenko, Galine Orlova, Sergey Lavrushev, Svetlana Zybova,
Misha Ponomarenko, Anatoly Frolov,

Supervisors: Nikolay Kolchanov, Prof. and Akinori Sarai, Prof.