SELEX_DB: Synthetic oligoDNA's binding the [RAR+RXR]-heterodimer (RXR-like site)

Input DNA Sequence :
from Screen:

from DB: Bases Available:
from File:
File formats here.

Select one of 20 [RAR+RXR]-related DNA site recognition model listed below:

(A) Sixteen [RAR+RXR]-binding site recognitions optimized over the [RAR+RXR]-heterodimer SELEXed data:

[RAR+RXR]: Frequency matrix for Homology Score
[RAR+RXR]: Frequency matrix for Information content
[RAR+RXR]: Frequency matrix for Matrix similarity
[RAR+RXR]: Frequency matrix for Sensibility score
[RAR+RXR]: Frequency matrix for Fisher's Linear Discriminant
[RAR+RXR]: Frequency matrix for Free energy change
[RAR+RXR]: Frequency matrix for Chance amount
[RAR+RXR]: Consensus with Homology Score
[RAR+RXR]: Consensus with Information content
[RAR+RXR]: Consensus with Matrix similarity
[RAR+RXR]: Consensus with Sensibility score
[RAR+RXR]: Consensus with Fisher's Linear Discriminant
[RAR+RXR]: Consensus with Free energy change
[RAR+RXR]: Consensus with Chance amount
[RAR+RXR]: Mean Recognition Score
[RAR+RXR]: Mean Recognition Score with Diffution Additive

(B) Four more additional Sp1-site recognition procedutes adapted to the RXR-like Natural sites:

[RAR+RXR]: Natural sites RXR (RXR-like site)
[RAR+RXR]: Natural sites RAR (RXR-like site)
[RAR+RXR]: Natural sites binding [PPAR+RXR]-complex (RXR-like site)
[RAR+RXR]: Natural sites COUP (RXR-like site)

The Institute of Cytology and Genetics (Russia)

This resource has been developed in collaboration between
The Institute of Cytology and Genetics (Novosibirsk, Russia) and The Institute of Physical and Chemical Research, RIKEN (Thukuba, Japan)
that was supported by RFBR grant #98-07-90126 (Russia) and STA Fellow #499042 (Japan)

Author: Julia Ponomarenko, Galine Orlova, Sergey Lavrushev, Svetlana Zybova,
Misha Ponomarenko, Anatoly Frolov,

Supervisors: Nikolay Kolchanov, Prof. and Akinori Sarai, Prof.