SELEX_DB: Synthetic oligoDNA in vitro randomized/selected for binding the SIM/ARNT-heterodimer, (with core "GCGTG" fixed)

Input DNA Sequence :
from Screen:

from DB: Bases Available:
from File:
File formats here.

Select one of 18 [SIM+ARNT]-site recognition model listed below:

(A) Fifteen [SIM+ARNT]-binding site recognitions optimized over the [SIM+ARNT]-SELEXed data:

SIM: Frequency matrix for Homology Score
SIM: Frequency matrix for Information content
SIM: Frequency matrix for Matrix similarity
SIM: Frequency matrix for Sensibility score
SIM: Frequency matrix for Fisher's Linear Discriminant
SIM: Frequency matrix for Free energy change
SIM: Frequency matrix for Chance amount
SIM: Consensus with Homology Score
SIM: Consensus with Information content
SIM: Consensus with Matrix similarity
SIM: Consensus with Sensibility score
SIM: Consensus with Fisher's Linear Discriminant
SIM: Consensus with Free energy change
SIM: Consensus with Chance amount
SIM: Mean Recognition Score

(B) Three additional TF-site recognition procedutes adapted to the others [SIM+ARNT]-related SELEXed data:

SIM: OligoDNA's SELEXed by Ah-receptor
SIM: OligoDNA's SELEXed by [Ah+ARNT]-heterodimer
SIM: OligoDNA's SELEXed by ARNT-homodimer

The Institute of Cytology and Genetics (Russia)

This resource has been developed in collaboration between
The Institute of Cytology and Genetics (Novosibirsk, Russia) and The Institute of Physical and Chemical Research, RIKEN (Thukuba, Japan)
that was supported by RFBR grant #98-07-90126 (Russia) and STA Fellow #499042 (Japan)

Author: Julia Ponomarenko, Galine Orlova, Sergey Lavrushev, Svetlana Zybova,
Misha Ponomarenko, Anatoly Frolov,

Supervisors: Nikolay Kolchanov, Prof. and Akinori Sarai, Prof.