SELEX_DB: Synthetic oligoDNA's binding the transcription factor Sp1

Input DNA Sequence :
from Screen:

from DB: Bases Available:
from File:
File formats here.

Select one of 17 Sp1-related DNA site recognition model listed below:

(A) Sixteen Sp1-binding site recognitions optimized over the Sp1 SELEXed data:

Sp1: Frequency matrix for Homology Score
Sp1: Frequency matrix for Information content
Sp1: Frequency matrix for Matrix similarity
Sp1: Frequency matrix for Sensibility score
Sp1: Frequency matrix for Fisher's Linear Discriminant
Sp1: Frequency matrix for Free energy change
Sp1: Frequency matrix for Chance amount
Sp1: Consensus with Homology Score
Sp1: Consensus with Information content
Sp1: Consensus with Matrix similarity
Sp1: Consensus with Sensibility score
Sp1: Consensus with Fisher's Linear Discriminant
Sp1: Consensus with Free energy change
Sp1: Consensus with Chance amount
Sp1: Mean Recognition Score
Sp1: Mean Recognition Score with Diffution Additive

(B) One more additional Sp1-site recognition procedutes adapted to the Sp1 natural sites:

Sp1: Natural sites Sp1

The Institute of Cytology and Genetics (Russia)

This resource has been developed in collaboration between
The Institute of Cytology and Genetics (Novosibirsk, Russia) and The Institute of Physical and Chemical Research, RIKEN (Thukuba, Japan)
that was supported by RFBR grant #98-07-90126 (Russia) and STA Fellow #499042 (Japan)

Author: Julia Ponomarenko, Galine Orlova, Sergey Lavrushev, Svetlana Zybova,
Misha Ponomarenko, Anatoly Frolov,

Supervisors: Nikolay Kolchanov, Prof. and Akinori Sarai, Prof.