SELEX_DB: Synthetic oligoDNA's binding the transcription factor v-Jun

Input DNA Sequence :
from Screen:

from DB: Bases Available:
from File:
File formats here.

Select one of 20 vJun-related DNA site recognition model listed below:

(A) Sixteen vJun-binding site recognitions optimized over the vJun SELEXed data:

v-Jun: Frequency matrix for Homology Score
v-Jun: Frequency matrix for Information content
v-Jun: Frequency matrix for Matrix similarity
v-Jun: Frequency matrix for Sensibility score
v-Jun: Frequency matrix for Fisher's Linear Discriminant
v-Jun: Frequency matrix for Free energy change
v-Jun: Frequency matrix for Chance amount
v-Jun: Consensus with Homology Score
v-Jun: Consensus with Information content
v-Jun: Consensus with Matrix similarity
v-Jun: Consensus with Sensibility score
v-Jun: Consensus with Fisher's Linear Discriminant
v-Jun: Consensus with Free energy change
v-Jun: Consensus with Chance amount
v-Jun: Mean Recognition Score
v-Jun: Mean Recognition Score with Diffution Additive

(B) Four additional TF-site recognition procedutes adapted to the others AP-1 related Natural and SELEXed data:

v-Jun: Natural sites c-Jun (AP-1 like site)
v-Jun: Natural sites AP-1 (AP-1 like site)
v-Jun: Natural sites binding the c-Fos containing complexes(AP-1 like site)
v-Jun: OligoDNA's SELEXed by Maf-protein (AP-1 like site)

The Institute of Cytology and Genetics (Russia)

This resource has been developed in collaboration between
The Institute of Cytology and Genetics (Novosibirsk, Russia) and The Institute of Physical and Chemical Research, RIKEN (Thukuba, Japan)
that was supported by RFBR grant #98-07-90126 (Russia) and STA Fellow #499042 (Japan)

Author: Julia Ponomarenko, Galine Orlova, Sergey Lavrushev, Svetlana Zybova,
Misha Ponomarenko, Anatoly Frolov,

Supervisors: Nikolay Kolchanov, Prof. and Akinori Sarai, Prof.