SELEX_DB: DNA binding the transcription factor YY1, core ACAT

Input DNA Sequence :
from Screen:

from DB: Bases Available:
from File:
File formats here.

Select one of 20 YY1-related recognition model (the site core ACAT) listed below:

(A) Fifteen YY1(ACAT)-site recognitions optimized over the YY1 SELEXed data containing the YY1 core CCAT:

YY1(ACAT): Frequency matrix for Homology Score
YY1(ACAT): Frequency matrix for Information content
YY1(ACAT): Frequency matrix for Matrix similarity
YY1(ACAT): Frequency matrix for Sensibility score
YY1(ACAT): Frequency matrix for Fisher's Linear Discriminant
YY1(ACAT): Frequency matrix for Free energy change
YY1(ACAT): Frequency matrix for Chance amount
YY1(ACAT): Consensus with Homology Score
YY1(ACAT): Consensus with Information content
YY1(ACAT): Consensus with Matrix similarity
YY1(ACAT): Consensus with Sensibility score
YY1(ACAT): Consensus with Fisher's Linear Discriminant
YY1(ACAT): Consensus with Free energy change
YY1(ACAT): Consensus with Chance amount
YY1(ACAT): Mean Recognition Score

(B) Three additional TF-site recognition procedutes adapted to the others YY1-related natural and SELEXed data:

YY1(ACAT): Natural sites YY1
YY1(ACAT): OligoDNA's YY1-SELEXed with the site core ACAT
YY1(ACAT): OligoDNA's SELEXed for binding the GTS-YY1 complex

(C) Two additional, since YY1 can also bind to Inr-element, Inr-element recognition procedutes adapted to the genomic DNA data:

YY1(ACAT): Natural high-eukaryotic Inr-elements (EPD database)
YY1(ACAT): Natural primitive-eukaryotic Inr-elements [Liston,DR, & Johnson,PJ, MCB, 1999, 19(3):2380-8]

The Institute of Cytology and Genetics (Russia)

This resource has been developed in collaboration between
The Institute of Cytology and Genetics (Novosibirsk, Russia) and The Institute of Physical and Chemical Research, RIKEN (Thukuba, Japan)
that was supported by RFBR grant #98-07-90126 (Russia) and STA Fellow #499042 (Japan)

Author: Julia Ponomarenko, Galine Orlova, Sergey Lavrushev, Svetlana Zybova,
Misha Ponomarenko, Anatoly Frolov,

Supervisors: Nikolay Kolchanov, Prof. and Akinori Sarai, Prof.