TRRD Publications 

• Kolchanov N.A., Podkolodnaya O.A., Ananko E.A., Ignatieva E.V., Stepanenko I.L., Kel-Margoulis O.V., Kel A.E., Merkulova T.I., Goryachkovskaya T.N., Busygina T.V., Kolpakov F.A., Podkolodny N.L., Naumochkin A.N., Korostishevskaya I.M., Romashchenko A.G., Overton G.C.
  Transcription Regulatory Regions Database (TRRD): its status in 2000. ( in PDF-format )
  Nucleic Acids Res. 2000, V. 28, P. 298-301.
• Kolchanov N.A., Ananko E.A., Podkolodnaya O.A., Ignatieva E.V., Stepanenko I.L., Kel-Margoulis O.V., Kel A.E., Merkulova T.I., Goryachkovskaya T.N., Busygina T.V., Kolpakov F.A., Podkolodny N.L., Naumochkin A.N., Romashchenko A.G.
  Transcription Regulatory Regions Database (TRRD): its status in 1999.
  Nucleic Acids Res 1999, V. 27, P. 303-306.
• N.A. Kolchanov, E.V. Ignatieva, O.V. Kel-Margoulis, A.E. Kel, E.A. Ananko., O.A. Podkolodnaya, I.L. Stepanenko, T.I. Merkulova, T.N. Goryachkovskaya, F.A. Kolpakov, N.L. Podkolodny, S.V. Lavryushev, D.A. Grigorovich, A.S. Frolov, A.G. Romashchenko
  Transcription regulatory regions database (TRRD): new possibilities provided by release 4.0.
  Proceedings of the First International Conference on Bioinformatics of Genome Regulation and Structure. 1998. BGRS’98. Novosibirsk - Altai Mountains, Russia, August 24-31, 1998. P.25-28.
• T.I. Merkulova, V.M. Merkulov, K.Y. Kropatchev, V.I. Kaledin
  The Glucocorticoid-Controlled Gene Regulatory Regions Database (GR-TRRD): the Using for the Elucidation of the Mechanisms of Chemical Hepatocarcinogens Action.
  Proceedings of the First International Conference on Bioinformatics of Genome Regulation and Structure. 1998. BGRS’98. Novosibirsk - Altai Mountains, Russia, August 24-31, 1998. P.33-36.
• E.A. Ananko, S.I. Bazhan, O.E. Belova
  Interferon-Inducible Genes - Transcription Regulatory Regions Database (IIG-TRRD).
  Proceedings of the First International Conference on Bioinformatics of Genome Regulation and Structure. 1998. BGRS’98. Novosibirsk - Altai Mountains, Russia, August 24-31, 1998. P.37-40.
• O.A. Podkolodnaya, I.L. Stepanenko
  The ESRG-TRRD: Database of Genes with Specific Transcription Regulation in Erythroid Cells.
  Proceedings of the First International Conference on Bioinformatics of Genome Regulation and Structure. 1998. BGRS’98. Novosibirsk - Altai Mountains, Russia, August 24-31, 1998. P.41-44.
• E.V. Ignatieva
  The Lipid Metabolism Transcription Regulatory Regions Database (LM-TRRD): Transcription Regulation of Lipid Metabolism Genes.
  Proceedings of the First International Conference on Bioinformatics of Genome Regulation and Structure. 1998. BGRS’98. Novosibirsk - Altai Mountains, Russia, August 24-31, 1998. P.45-49.
• T.N. Goryachkovsky, E.A. Ananko, S.E. Peltek
  PLANT-TRRD Database.
  Proceedings of the First International Conference on Bioinformatics of Genome Regulation and Structure. 1998. BGRS’98. Novosibirsk - Altai Mountains, Russia, August 24-31, 1998. P.50-53.
• Heinemeyer, E. Wingender, I. Reuter, H. Hermjakob, A.E. Kel, O.V. Kel, E.V. Ignatieva, E.A. Ananko, O.A. Podkolodnaya, F.A. Kolpakov, N.L. Podkolodny and N.A. Kolchanov
  Databases on Transcriptional Regulation: TRANSFAC, TRRD, and COMPEL.
  Nucleic Acids Res. 1998. V. 26. P. 362-367.
• Wingender E., Kel’ A.E., Kel’ O.V., Karas H., Heinmeyer T., Dietze P., Knuppel R., Romaschenko A.G., and Kolchanov N.A.
  TRANSFAC, TRRD and COMPEL: towards a federated database system on transcription regulation.
  Nucleic Acids Research, 1997, Vol. 25, No.1, p. 265-268.
• Kel' A.E., Kolchanov N.A., Kel' O.V., Romashchenko A.G., Anan'ko E.A., Ignat'eva E.V., Merkulova T.I., Podkolodnaia O.A., Stepanenko I.L., Kochetov A.V., Kolpakov F.A., Podkolodnyi N.L., Naumochkin A.A.
  TRRD: a database of transcription regulatory regions in eukaryotic genes.
  Mol Biol (Mosk) 1997 Jul; 31(4): 521-530
• Karas H., Kel' E., Kel' O.V., Kolchanov N.A., Wingender E.
  Integrating knowledge on transcriptional regulation of eukaryotic genes based on information from TRANSFAC, TRRD, and COMPEL databases.
  Mol Biol (Mosk) 1997 Jul;31(4): 531-539
• Anan'ko E.A., Bazhan S.I., Belova O.E., Kel' A.E.
  Mechanisms of transcriptional regulation of interferon-induced genes: description in the IIG-TRRD information system.
  Mol Biol (Mosk) 1997 Jul;31(4):592-604
• Ignat'eva E.V., Merkulova T.I., Vishnevskii O.V., Kel' A.E.
  Transcriptional regulation of lipid metabolism genes: description in the TRDD database.
  Mol Biol (Mosk) 1997 Jul;31(4):575-591
• Kel' O.V., Kel' A.E.
  Intergenic interrelations in regulating the cell cycle: key role of E2F family transcription factors.
  Mol Biol (Mosk) 1997 Jul;31(4):548-561
• Podkolodnaia O.A., Stepanenko I.L.
  Mechanisms of transcriptional regulation of erythroid specific genes.
  Mol Biol (Mosk) 1997 Jul;31(4):562-574
• Merkulova T.I., Merkulov V.M., Mitina R.L.
  Mechanisms of glucocorticoid regulation and regulatory regions of genes, controlled by glucocorticoids: description in the TRDD database.
  Mol Biol (Mosk) 1997 Jul;31(4):714-725
• A.E.Kel, O.V.Kel, O.V.Vishnevsky, M.P.Ponomarenko I.V.Ischenko, H.Karas, N.A.Kolchanov, H. Sklenar, E.Wingender.
  TRRD and COMPEL databases on transcription linked to TRANSFAC as tools for analysis and recognition of regulatory sequences.
  In: Lectures Notes in Computer Science. Bioinformatics. 1997. GCB'96, Leipzig, September/October 1996 Selected Papers (Ralf Hofestaedt, Thomas Lengauer, Markus Loeffler, Dietmar Schomburg eds.) Springer-Verlag Berlin Heidelberg New York. pp.99-105.
• Kel, O.V., Romashchenko, A.G., Kel, A.E., Naumochkin, A.N., Kolchanov, N.A.
  Data representation in the TRRD - a database of transcription regulatory regions of the eukaryotic genomes.
  Proceedings of the 28^th Annual Hawaii International Conference on System Sciences [HICSS]. 1995. V. 5. Biotechnology Computing, IEE Computer Society Press: Los Alamos, California. P. 42 -51.