Nikolay L. Podkolodny, Senior
Researcher, Head of Network department
Curriculum Vitae and List of Publications
- Date of Birth:
13.03.52
- Marital status:
married
- Home Address:
, 630128, Russia, Novosibirsk, Polevaya 22, 114
- Work Address:
Institute of Cytology and Genetics, Novosibirsk, 630090, Russia
- Telephone:
+7(3832) 332277
- FAX:
+7(3832) 331278
- Emails:
pnl@bionet.nsc.ru
Work Experience and Current Position:
1999-present : Head of Network department of
Institute of Cytology and Genetics, Novosibirsk, 630090, Russia
1998-present : Senior Researcher of Institute of
Cytology and Genetics, Novosibirsk, 630090, Russia 1985-now : Researcher of Institute of
Computational Mathematics and Mathematical Geophysics Siberian Division of RAS.
Novosibirsk
1978-1985 : Junior Researcher of Computing
Center.
1976-1978 : Junior Researcher of Clinical
Department of institute of Citology and Genetics
1974-1976 : Post Graduate Student of Clinical
Department of institute of Cytology and Genetics
Area of Scientific interest:
Distributed Data bases and Knowledge-based systems, Knowledge Discovery & Data
mining, Mathematical Modeling of BioMedical processes, Internet and network technologies,
Databases on regulatory genomic sequences, integration of heterogeneous informational
resources.
Education Background:
Full secondary school, 1959 - 1969
Novosibirsk State University (Physics Faculty: Physics & Applied Mathematics),
1969-1974.
Bibliography:
Articles:
- Heinemeyer T., Wingender E., Reuter I., Hermjakob H., Kel A.E., Kel O.V., Ignatieva
E.V., Ananko E.A., Podkolodnaya O.A., Kolpakov F.A., Podkolodny N.L., Kolchanov N.A.
Databases on transcriptional reguklation: TRANSFAC, TRRD and COMPEL. Nucleic Acids
Research, 1998, Vol. 26, N1, 362-367.
- Kolchanov N.A., Ananko E.A., Podkolodnaya O.A., Ignatieva E.V., Stepanenko I.L.,
Kel-Margoulis O.V., Kel A.E., Merkulova T.I., Goryachkovsky T.N., Busygina T.V., Kolpakov
F.A., Podkolodny N.L., Naumochkin A.N., Romashchenko A.G. Transcription Regulatory Regions
Database (TRRD): its status in 1999. // Nucleic Acids Res. 1999, V. 27, No. 1, p. 303-306.
- Kolchanov N.A., Podkolodny N.L. et al. Transcription Regulatory Regions Database (TRRD):
its status in 2000. // Nucleic Acids. Res. 2000. V. 28. ¹ 1.
- Kolchanov N. A, Ponomarenko M.P., Frolov A. S., Ananko E. A., Kolpakov F. A., Ignatieva
E. V., Podkolodnaya O. A., Goryachkovsky T. N., Stepanenko I. L., Merkulova T. I., Babenko
V. V., Ponomarenko Yu. V., Kochetov A. V., Podkolodny N. L., Vorobiev D. V., Lavryushev S.
V, Grigorovich D. A., Kondrakhin Yu. V., Milanesi L., Wingender E., Solovyev V. and
Overton G. C. Integrated databases and computer systems for studying eukaryotic gene
expression // Bioinformatics, 1999, V. 15, pp. 669-686.
- Ponomarenko M.P., Ponomarenko J.V., Frolov A.S., Podkolodny N.L., Savinkova L.K.,
Kolchanov N.A., and Overton G.C. (1999) Identification of sequence-dependent features
correlating to activity of DNA sites interacting with proteins. Bioinformatics, V. 15, N.
7/8, P. 687-703.
- Kolchanov N.A., Ponomarenko M.P., Kel A.E., Kondrakhin Yu.V., Frolov A.S., Kolpakov
F.A., Goriachkovsky T.N., Kel-Margulis O.V., Ananko E.A., Ignatieva E.V., Podkolodnaia
O.A., Stepanenko I.L., Merkulova T.I., Babenko V.N., Vorobiev D.G., Lavryushev S.V.,
Ponomarenko J.V., Kochetov A.V., Kolesov G.N., Podkolodny N.L., Milanesi L., Wingender E.,
Heinemeier T., Solovyev V.V., Overton G.C. (1999) GeneExpress: a WWW-oriented integrator
for databases and computer systems for studying the eukaryotic gene expression. Biofizika,
V. 44, N. 5, P. 837-841.
- Kolchanov N.A., Podkolodnaya O.A., Ananko E.A., Ignatieva E.V., Stepanenko I.L.,
Kel-Margoulis O.V., Kel A.E., Merkulova T.I., Goryachkovskaya T.N., Busygina T.V.,
Kolpakov F.A., Podkolodny N.L., Naumochkin A.N., Korostishevskaya I.M., Romashchenko A.G.,
Overton G.C. Transcription Regulatory Regions Database (TRRD): its status in 2000. Nucleic
Acids Res., 2000, 28, 1, 298-301