Link up to TRRD home page

THE GLUCOCORTICOID-REGULATED GENE TRANSCRIPTION REGULATORY REGIONS DATABASE

(GR-TRRD)

Merkulova T.I. e-mail: merkti@niboch.nsc.ru

Version 3.2, revised March 22, 2008


GR-TRRD Publications



Genes coding for enzymes

Ac.number

Gene

Organism

A00083

6-phosphofructo-2-kinase/ fructose-2,6-bisphosphatase gene

Rattus norvegicus

A00379

Alcohol dehydrogenese 2 class I gene

Homo sapiens

A00871

Alpha-amylase 2 gene

Mus musculus

A00152

Aromatase gene (Cyp19)

Homo sapiens

A02453

Aryl sulfotransferase gene

Rattus norvegicus

A00387

Aspartate aminotransferase gene

Rattus norvegicus

A00757

Carbamoylphosphate synthetase 1 gene

Rattus norvegicus

A01214

Class 3 aldehyde dehydrogenase gene

Rattus norvegicus

A00160

Cytochrome CYP2B2 gene

Rattus norvegicus

A01395

Cytochrome P-450c27 gene

Rattus norvegicus

A01497

Cytochrome CYP2C9 gene

Homo sapiens

A02460

Cytochrome CYP3A5 gene

Homo sapiens

A00076

Egg white lysozyme gene

Gallus gallus

A00876

Glucose-6-phosphatase gene

Homo sapiens

A00877

Glucose-6-phosphatase gene

Mus musculus

A00875

Glutamine synthetase gene

Gallus gallus

A00713

Glutathione S-transferase A2 gene

Rattus norvegicus

A00770

Heme oxygenase-2 gene

Rattus norvegicus

A00709

Na, K-ATPase beta 1 subunit gene

Homo sapiens

A00768

Phenylalanine hydroxylase gene

Mus musculus

A02197

Phenylethanolamine N-methyltransferase gene

Rattus norvegicus

A00878

Pepsinogen C gene

Homo sapiens

A00092

Phosphoenolpyruvate (GTP)-carboxykinase gene

Rattus norvegicus

A00094

Tryptophan oxygenase gene

Rattus norvegicus

A00093

Tyrosine aminotransferase gene

Rattus norvegicus

A02498

Tyrosine hydroxylase gene

Mus musculus

 

Genes coding for hormones, hormone precursors, and releasing factors

Ac.number

Gene

Organism

A00954

 Atrial natriuretic factor gene

Rattus norvegicus

A00060

Angiotensinogen gene

Rattus norvegicus

A00859

Corticotropin releasing hormone gene

Homo sapiens

A00056

Glycoprotein hormone a -subunit gene

Homo sapiens

A00070

Growth hormone gene-1

Homo sapiens

A00084

Placental lactogen B gene

Homo sapiens

A00431

Prolactin gene

Bos taurus

A00430

Pro-opiomelanocortin gene

Rattus norvegicus

 

Genes coding for receptors

Ac.number

Gene

Organism

A01858

5-hydroxytryptamine 1A receptor

Rattus norvegicus

A00429

Angiotensin II type 1A receptor gene

Rattus norvegicus

A01873

Beta1-adrenergic receptor gene

Ovis aries

A02090

Beta1-adrenergic receptor gene

Rattus norvegicus

A00769

Beta2-adrenergic receptor gene

Rattus norvegicus

A01094

Glucocorticoid receptor gene

Homo sapiens

A00170

Insulin receptor gene

Homo sapiens

A02157

Interleukin-2 receptor alpha chain precursor gene

Mus musculus

A00848

Mineralocorticoid receptor gene

Rattus norvegicus

A01121

Polymeric immunoglobulin receptor gene

Mus musculus

A02464

Thyrotropin-releasing hormone receptor gene

Homo sapiens

 

Viral genes and genomes

Ac.number

Genes or genomes

A00045

MMTV

A00079

Murine Moloney Sarcoma

 

Genes coding for acute phase proteins

Ac.number

Gene

Organism

A00121

Alpha1-acid glycoprotein gene

Rattus norvegicus

A00228

Alpha1-acid glycoprotein gene

Mus musculus

A00388

Fibrinogen B-beta subunit gene

Xenopus laevis

A00734

Gamma-fibrinogen subnit gene

Xenopus laevis

A00115

Interleukin-6 gene

Homo sapiens

A00080

Metallothionein I gene

Mus musculus

A00071

Metallothionein IIA gene

Homo sapiens

 

Genes coding for serum proteins

Ac.number

Gene

Organism

A02078

alpha-fetoprotein gene

Gorilla gorilla

A02077

alpha-fetoprotein gene

Pan troglodytes

A02079

alpha-fetoprotein gene

Pongo pygmaeus

A00008

alpha-fetoprotein gene

Rattus norvegicus

A00192

alpha-fetoprotein gene

Homo sapiens

A00267

alpha-fetoprotein gene

Mus musculus

A00073

Insulin-like growth factor binding protein 1 gene

Homo sapiens

A00432

Insulin-like growth factor binding protein 1 gene

Rattus norvegicus

 

Genes coding for milk proteins

Ac.number

Gene

Organism

A00602

Beta-casein gene

Rattus norvegicus

A00601

Whey acidic protein gene

Mus musculus

A00489

Whey acidic protein gene

Rattus norvegicus

 

Genes coding for transcription factors, protein kinases and related proteins

Ac.number

Gene

Organism

A00108

c-myc protooncogene

Mus musculus

A02491

Constitutive androstane receptor gene

Homo sapiens

A02454

Cyclin-dependent kinase inhibitor p57Kip2 gene

 Homo sapiens

A02455

Cyclin-dependent kinase inhibitor p57Kip2 gene

Mus musculus

A02452

Dexras1 gene

Homo sapiens

A02457

FK506-binding protein 5 gene

Homo sapiens

A02458

Glucocorticoid-induced leucine zipper protein gene

Homo sapiens

A01498

Hepatocyte nuclear factor 4 gene

Homo sapiens

A00384

Hepatocyte nuclear factor 4 gene

Mus musculus

A02156

Serine/threonine protein kinase 1

Homo sapiens

A00980

Serin/Threonine protein kinase gene

Rattus norvegicus

  

Other genes

Ac.number

Gene

Organism

A01380

bcl-x  gene

Mus musculus

A00874

Bone sialoprotein gene

Rattus norvegicus

A02496

Chromogranin A precursor gene

Rattus norvegicus

A00026

Elastin gene

Homo sapiens

A02137

Epithelial Na+ channel alpha subunit gene

Homo sapiens

A02140

Epithelial Na+ channel alpha subunit gene

Rattus norvegicus

A02456

glucose-6-phosphate transporter gene

Homo sapiens

A02467

Ileal sodium/bile acid cotransporter gene

Homo sapiens

A00300

Link protein gene

Rattus norvegicus

A00364

Osteocalcin gene

Homo sapiens

A00363

Osteocalcin gene

Rattus norvegicus

A00361

Proliferin gene

Mus musculus

A00001

Uteroglobin gene

Oryctolagus cuniculus

 


GR-TRRD Publications

 Merkulova, T.I., Merkulov, V.M., and Mitina, R.L. Glucocorticoid Regulation Mechanisms and Glucocorticoid-controlled Gene Regulatory Regions: Description in the TRRD Database. Mol. Biol. (Mosk) 1997, Jul;31(4): 605-615  

Merkulova T.I., Merklov V.M., Kropatchev K.Y., Kaledin V.I. The Glucocorticoid-Controlled Gene Regulatory Regions Database (GR-TRRD): the using for the elucidation of the mechanisms of chemical hepatocarcinogens action. Proceedings of the First International Conference on Bioinformatics of Genome Regulation and Structure. 1998. BGRS'98. Novosibirsk - Altai Mountains, Russia, August 24-31, 1998. P.33-36

 Merkulov V.M.,  MerkulovaT.I., Structural variants of binding sites for glucocorticoid receptor and the mechanisms of glucocorticoid regulation: analysis of GR-TRRD database. Proceedings of the Fifth International Conference on Bioinformatics of Genome Regulation and Structure.(BGRS'2006) Novosibirsk - Altai Mountains, Russia, 2006; V.1 P.106-109.

BGRS'2006: Full PDF text Proceedings [Volume1] [Volume2] [Volume3]


Bibliographic assistance: Lokhova I.V.


 Institute of Cytology and Genetics
(Siberian Branch of the Russian Academy of Sciences), 
Lavrentieva 10, Novosibirsk, 630090 Russia;
Fax: +7 3832 331278;