SSpot: Building plot of potential of the sequence to form stable structural RNA
Input RNA sequence :
Here an example is shown, where we search for the tRNA Ser sequence (of 82 nt in length) which is present in the sequence extracted from the EMBL databank (ID
AF184043
). The total length of this sequence is 400 nt. The tRNA Ser gene is located in-between positions 218 - 299 nt.
:
Input RNA sequence :
tgcaccaaataagtttctgatgcatagagagtcagataacaagtaaagattaagacacta ttatgtttcccaggaacttcttattgaaagagagagacaaatatataaaaagtgacaaat acaaacacggaagcattaacctgccgtgggaacattaaaaagcgagagagtcaaagagcc taacacgacttcctctgaaacaaaaagtgtcctcggagctgtgatggccgagtggttaag gtgttggactcgaaatccaatgggggttccccgcgcaggttcaaatcctgctcacagcgt cgccattttctggttagatttccaatttgctactttcatcagttagctttcattagttca ctaggatagaaagttgtgagtgctatcgctgtggctttta
Window size for SSpot profile:
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About
This resource was developed at the Institute of Cytology and Genetics, Novosibirsk, Russia
