Automatic C-code generation for site recognition

Input DNA Sequences, each in new line:
from Screen: 1024 per line max

from DB: Bases Available: SAMPLES from Novosibirsk EMBL by ID from Heidelberg (SRS5) GenBank by ID from Heidelberg (SRS5) EMBL by AC from Heidelberg (SRS5) GenBank by AC from Heidelberg (SRS5)
from File: File formats here.

Choose method: Consensus using the standard alphabet {A,T,G,C} Dinucleotids Consensus using the standard alphabet {A,T,G,C} Trinucleotids Consensus with using the standard alphabet {A,T,G,C} Mononucleotide Consensus defined using the binary alphabet {M=A/C, K=T/G} Dinucleotide Consensus defined using the binary alphabet {M=A/C, K=T/G} Trinucleotide Consensus defined using the binary alphabet {M=A/C, K=T/G} Tetranucleotide Consensus defined using the binary alphabet {M=A/C, K=T/G} Pentanucleotide Consensus defined using the binary alphabet {M=A/C, K=T/G} Hexanucleotide Consensus defined using the binary alphabet {M=A/C, K=T/G} Mononucleotide Consensus defined with using the binary alphabet {R=A/G, Y=T/C} Dinucleotide Consensus defined with using the binary alphabet {R=A/G, Y=T/C} Trinucleotide Consensus defined with using the binary alphabet {R=A/G, Y=T/C} Tetranucleotide Consensus defined with using the binary alphabet {R=A/G, Y=T/C} Pentanucleotide Consensus defined with using the binary alphabet {R=A/G, Y=T/C} Hexanucleotide Consensus defined with using the binary alphabet {R=A/G, Y=T/C} Mononucleotide Consensus defined with using the binary alphabet {W=A/T, S=G/C} Dinucleotide Consensus defined with using the binary alphabet {W=A/T, S=G/C} Trinucleotide Consensus defined with using the binary alphabet {W=A/T, S=G/C} Tetranucleotide Consensus defined with using the binary alphabet {W=A/T, S=G/C} Pentanucleotide Consensus defined with using the binary alphabet {W=A/T, S=G/C} Hexanucleotide Consensus defined with using the binary alphabet {W=A/T, S=G/C} Frequence matrix using the standard alphabet {A,T,G,C} Dinucleotide frequence matrix using the standard alphabet {A,T,G,C} Trinucleotide frequence matrix using the standard alphabet {A,T,G,C} Mononucteotide Freq. matrix defined with using the binary alphabet {M=A/C, K=T/G} Dinucteotide Freq. matrix defined with using the binary alphabet {M=A/C, K=T/G} Trinucteotide Freq. matrix defined with using the binary alphabet {M=A/C, K=T/G} Tetranucteotide Freq. matrix defined with using the binary alphabet {M=A/C, K=T/G} Pentanucteotide Freq. matrix defined with using the binary alphabet {M=A/C, K=T/G} Hexanucteotide Freq. matrix defined with using the binary alphabet {M=A/C, K=T/G} Mononucteotide Freq. matrix defined with using the binary alphabet {R=A/G, Y=T/C} Dinucteotide Freq. matrix defined with using the binary alphabet {R=A/G, Y=T/C} Trinucteotide Freq. matrix defined with using the binary alphabet {R=A/G, Y=T/C} Tetranucteotide Freq. matrix defined with using the binary alphabet {R=A/G, Y=T/C} Pentanucteotide Freq. matrix defined with using the binary alphabet {R=A/G, Y=T/C} Hexanucteotide Freq. matrix defined with using the binary alphabet {R=A/G, Y=T/C} Mononucteotide Freq. matrix defined with using the binary alphabet {W=A/T, S=G/C} Dinucteotide Freq. matrix defined with using the binary alphabet {W=A/T, S=G/C} Trinucteotide Freq. matrix defined with using the binary alphabet {W=A/T, S=G/C} Tetranucteotide Freq. matrix defined with using the binary alphabet {W=A/T, S=G/C} Pentanucteotide Freq. matrix defined with using the binary alphabet {W=A/T, S=G/C} Hexanucteotide Freq. matrix defined with using the binary alphabet {W=A/T, S=G/C} 3bp-Consensus of the alphabet {A,T,G,C & X} 3bp-Frequency of the alphabet {A,T,G,C & X} 5bp-Consensus of the alphabet {A,T,G,C & X} 5bp-Frequency of the alphabet {A,T,G,C & X} 3bp-Consensus of the alphabet {M=A+C, K=T+G, & X} 3bp-Frequency of the alphabet {M=A+C, K=T+G, & X} 5bp-Consensus of the alphabet {M=A+C, K=T+G, & X} 5bp-Frequency of the alphabet {M=A+C, K=T+G, & X} 7bp-Consensus of the alphabet {M=A+C, K=T+G, & X} 7bp-Frequency of the alphabet {M=A+C, K=T+G, & X} 9bp-Consensus of the alphabet {M=A+C, K=T+G, & X} 3bp-Consensus of the alphabet {R=A+G, Y=T+C, & X} 3bp-Frequency of the alphabet {R=A+G, Y=T+C, & X} 5bp-Consensus of the alphabet {R=A+G, Y=T+C, & X} 5bp-Frequency of the alphabet {R=A+G, Y=T+C, & X} 7bp-Consensus of the alphabet {R=A+G, Y=T+C, & X} 7bp-Frequency of the alphabet {R=A+G, Y=T+C, & X} 9bp-Consensus of the alphabet {R=A+G, Y=T+C, & X} 3bp-Consensus of the alphabet {W=A+T, S=G+C, & X} 3bp-Frequency of the alphabet {W=A+T, S=G+C, & X} 5bp-Consensus of the alphabet {W=A+T, S=G+C, & X} 5bp-Frequency of the alphabet {W=A+T, S=G+C, & X} 7bp-Consensus of the alphabet {W=A+T, S=G+C, & X} 7bp-Frequency of the alphabet {W=A+T, S=G+C, & X} 9bp-Consensus of the alphabet {W=A+T, S=G+C, & X}

Generate NO sequences as Pure random Mixed inside seqs Mixed between seqs in cols Double mixed

Show Sequences in Generated code

Authors: Misha Ponomarenko, Anatoly Frolov
Contributors: Julia Ponomarenko Olga Podkolodny
Programming support: Dmitry Grigorovich
Leaders: N.A. Kolchanov  
& Chris Overton