Recognizing the CEBP transcription factor binding site by consensus

Input DNA Sequence :
from Screen:

from DB: Bases Available:
from File: File formats here.


 

N Method Weight (0-10 are valid) Offset (-1.0~1.0 are valid)
1. CEBP: 1bp-Consensus of the alphabet {A,T,G,C}

2.  CEBP: 2bp-Consensus of the alphabet {A,T,G,C}

3. CEBP: 3bp-Consensus of the alphabet {A,T,G,C}

4.  CEBP: 3bp-Consensus of the alphabet {A,T,G,C & X}
5. CEBP: 5bp-Consensus of the alphabet {A,T,G,C & X}
6.  CEBP: 2bp-Consensus of the alphabet {M=A+C, K=T+G}
7. CEBP: 3bp-Consensus of the alphabet {M=A+C, K=T+G}
8. CEBP: 4bp-Consensus of the alphabet {M=A+C, K=T+G}
9. CEBP: 3bp-Consensus of the alphabet {M=A+C, K=T+G, & X}
10. CEBP: 5bp-Consensus of the alphabet {M=A+C, K=T+G, & X}
11. CEBP: 2bp-Consensus of the alphabet {R=A+G, Y=T+C}
12. CEBP: 3bp-Consensus of the alphabet {R=A+G, Y=T+C}
13. CEBP: 4bp-Consensus of the alphabet {R=A+G, Y=T+C}
14. CEBP: 3bp-Consensus of the alphabet {R=A+G, Y=T+C, & X}
15. CEBP: 5bp-Consensus of the alphabet {R=A+G, Y=T+C, & X}
16. CEBP: 2bp-Consensus of the alphabet {W=A+T, S=G+C}
17. CEBP: 3bp-Consensus of the alphabet {W=A+T, S=G+C}
18. CEBP: 4bp-Consensus of the alphabet {W=A+T, S=G+C}
19. CEBP: 3bp-Consensus of the alphabet {W=A+T, S=G+C, & X}
20. CEBP: 5bp-Consensus of the alphabet {W=A+T, S=G+C, & X}

Institute of Cytology and Genetics

This resource has been developed in Institute of Cytology and Genetics. Novosibirsk, Russia

Authors: Misha Ponomarenko, Anatoly Frolov, Julia Ponomarenko
Contributor: Olga Podkolodnaya
Leader: N.A. Kolchanov