CRASP
Correlation analysis of
protein sequences


ANALYSIS OF PAIR POSITIONAL CORRELATIONS
(advanced setup form)
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POSITION PAIR ANALYSIS      Integral characteristics analysis      Data Examples     Related papers     Help Info      Feedback

Sequence alignment data: 
 Load from screen:
 
Load from file:  
Format

Calculation parameters setup:
Amino Acid Quantity:
AAindex number
Type of matrix:
Variability threshold:
Gap number threshold: (%)
Selected sequence #
First AA number
Position indexing type 

Weights setup:

Option:

Tree in (*.ph) format or User Weights:
Load from screen:

Load from file:   

Separator:


Output parameters setup:

(%)


Optional parameters setup

Clustering highly correlated positions:

Show rearranged matrix:
Clustering cutoff value:

Detecting regions of high density of significant correlation:
Window size:
Correlation threshold:
Correlation sign:
Significance level: (%)
Example