Analysis of Pair Positional Correlations

CRASP Correlation analysis of protein sequences	ANALYSIS OF PAIR POSITIONAL CORRELATIONS (simple setup example)
OVERVIEW

Sequence alignment data:
Load from screen:

>AP1_CHICK
SQERIKAERKRMRNRIAASKCRKRKLERIAR
>AP1_DROME
AQEKIKLERKRQRNRVAASKCRKRKLERISK
>AP1_KLULA
PLETEAKDKRTAQNRAAQRAFRERRERKMKE
>AP1_SCHPO
NSDQEPSSKRKAQNRAAQRAFRKRKEDHLKA
>ATF1_HUMAN
DDPQLKREIRLMKNREAARECRRKKKEYVKC
>ATF1_SCHPO
ETDEEKRKSFLERNRQAALKCRQRKKQWLSN
>ATF2_MOUSE
EDPDEKRRKFLERNRAAASRCRQKRKVWVQS
>ATF3_HUMAN
PEEDERKKRRRERNKIAAAKCRNKKKEKTEC
>ATF3_MOUSE
PEEDERKRRRRERNKIAAAKCRNKKKEKTEC
>ATF4_HUMAN
GEKLDKKLKKMEQNKTAATRYRQKKRAEQEA
>ATF4_MOUSE
TEKLDKKLKKMEQNKTAATRYRQKKRAEQEA
>BBF2_DROME
EEKSLKKIRRKIKNKISAQESRRKKKEYMDQ
>CAD1_YEAST
RIDSEAKSRRTAQNRAAQRAFRDRKEAKMKS
>CNC_DROME
QLSLIRDIRRRGKNKVAAQNCRKRKLDQILT 
>CPC1_NEUCR
EDPSDVVAMKRARNTLAARKSRERKAQRLEE
>CREA_HUMAN
EEATRKRELRLMKNREAAKECRRRKKEYVKC
>CREA_MOUSE
EEATRKRELRLMKNREAARECRRKKKEYVKC
>CREB_BOVIN
EEAARKREVRLMKNREAARECRRKKKEYVKC
>CREB_CHLVR
EEATRKRELRLYKNREAARECRRKKKEYVKC
>FOSB_HUMAN
PEEEEKRRVRRERNKLAAAKCRNRRRELTDR
>FOSX_MSVFR
PEEEVKRRIRRERNKMAAAKCRNRRRELTDT
>FOS_AVINK
PEEEEKRRIRRERNKMAAAKCRNRRRELTDT
>FOS_CYPCA
PEEEEKKRVRRERNKMAAAKCRNRRRELTDT
>FOS_FUGRU
PEEEEKKRIRRERNKQAAAKCRNRRRELTDT
>FRA1_HUMAN
PEEEERRRVRRERNKLAAAKCRNRRKELTDF
>FRA2_CHICK
PEEEEKRRIRRERNKLAAAKCRNRRRELTEK
>FRA_DROME
PEEEQKRAVRRERNKQAAARCRKRRVDQTNE
>GCN4_YEAST
PESSDPAALKRARNTEAARRSRARKLQRMKQ
>JUNB_CYPCA
NQERIKAERKRLRNRLAATKCRKRKLERISR
>JUNB_HUMAN
DQERIKVERKRLRNRLAATKCRKRKLERIAR
>JUND_CHICK
TQERIKAERKRLRNRIAASKCRKRKLERISR
>MAFF_CHICK
EVARLKQRRRTLKNRGYAASCRVKRVCQKEE
>MAFG_CHICK
EIIQLKQRRRTLKNRGYAASCRVKRVTQKEE
>MAFK_CHICK
EVIRLKQRRRTLKNRGYAASCRIKRVTQKEE
>MAFK_MOUSE
EVTRLKQRRRTLKNRGYAASCRIKRVTQKEE
>NRL_HUMAN
EALRLKQRRRTLKNRGYAQACRSKRLQQRRG
>PCR1_SCHPO
EVDDEKRRRILERNRIAASKFRQKKKEWIKE
>PDR4_YEAST
DLDPETKQKRTAQNRAAQRAFRERKERKMKE
>SKO1_YEAST
EEQERKRKEFLERNRVAASKFRKRKKEYIKK
>TJUN_AVIS1
SQERIKAERKRMRNRIAASKSRKRKLERIAR
>TMAF_AVIS4
EVIRLKQKRRTLKNRGYAQSCRFKRVQQRHV
>XBP1_HUMAN
LSPEEKALRRKLKNRVAAQTARDRKKARMSE

Load from file:
Format

Calculation parameters setup:

Amino Acid Quantity:

Weights setup:

Option:

Tree in (*.ph) format or User Weights:
Load from screen:

Load from file:

Separator:

Output parameters setup:

Data output:

Significance level:

(%)

Position indexing type

ANALYSIS OF PAIR POSITIONAL CORRELATIONS (simple setup example)

ANALYSIS OF PAIR POSITIONAL CORRELATIONS
(simple setup example)