List of Amino Acid indexes from AAIndex database.
References:
Nakai, K., Kidera, A., and Kanehisa, M.; Cluster analysis of amino acid indices for
prediction of protein structure and function. Protein Eng. 2, 93-100 (1988)
Tomii, K. and Kanehisa, M.; Analysis of amino acid indices and mutation matrices for
sequence comparison and structure prediction of proteins. Protein Eng. 9, 27-36 (1996).
(http://www.genome.ad.jp/dbget/aaindex.html)
1 |
ANDN920101 | alpha-CH chemical shifts (Andersen et al., 1992) |
2 |
ARGP820101 | Hydrophobicity index (Argos et al., 1982) |
3 |
ARGP820102 | Signal sequence helical potential (Argos et al., 1982) |
4 |
ARGP820103 | Membrane-buried preference parameters (Argos et al., 1982) |
5 |
BEGF750101 | Conformational parameter of inner helix (Beghin-Dirkx, 1975) |
6 |
BEGF750102 | Conformational parameter of beta-structure (Beghin-Dirkx, 1975) |
7 |
BEGF750103 | Conformational parameter of beta-turn (Beghin-Dirkx, 1975) |
8 |
BHAR880101 | Average flexibility indices (Bhaskaran-Ponnuswamy, 1988) |
9 |
BIGC670101 | Residue volume (Bigelow, 1967)[(Asn Gln 5.0)] |
10 |
BIOV880101 | Information value for accessibility |
11 |
BIOV880102 | Information value for accessibility |
12 |
BROC820101 | Retention coefficient in TFA (Browne et al., 1982) |
13 |
BROC820102 | Retention coefficient in HFBA (Browne et al., 1982) |
14 |
BULH740101 | Transfer free energy to surface (Bull-Breese, 1974) |
15 |
BULH740102 | Apparent partial specific volume (Bull-Breese, 1974)[(Tyr !)] |
16 |
BUNA790101 | alpha-NH chemical shifts (Bundi-Wuthrich, 1979)[(Pro !)] |
17 |
BUNA790102 | alpha-CH chemical shifts (Bundi-Wuthrich, 1979) |
18 |
BUNA790103 | Spin-spin coupling constants 3JHalpha-NH (Bundi-Wuthrich, 1979)[(Met Pro Trp !)] |
19 |
BURA740101 | Normalized frequency of alpha-helix (Burgess et al., 1974) |
20 |
BURA740102 | Normalized frequency of extended structure (Burgess et al., 1974) |
21 |
CHAM810101 | Steric parameter (Charton, 1981)[(Pro !)] |
22 |
CHAM820101 | Polarizability parameter (Charton-Charton, 1982)[(Pro 0.018)] |
23 |
CHAM820102 | Free energy of solution in water, kcal/mole (Charton-Charton, 1982)[(Asn His Lys Thr !)] |
24 |
CHAM830101 | The Chou-Fasman parameter of the coil conformation (Charton-Charton, 1983) |
25 |
CHAM830102 | A parameter defined from the residuals obtained from the best correlation |
26 |
CHAM830103 | The number of atoms in the side chain labelled 1+1 (Charton-Charton, 1983)[(Pro !)] |
27 |
CHAM830104 | The number of atoms in the side chain labelled 2+1 (Charton-Charton, 1983)[(Pro !)] |
28 |
CHAM830105 | The number of atoms in the side chain labelled 3+1 (Charton-Charton, 1983)[(Pro !)] |
29 |
CHAM830106 | The number of bonds in the longest chain (Charton-Charton, 1983)[(Pro !)] |
30 |
CHAM830107 | A parameter of charge transfer capability (Charton-Charton, 1983)[(Pro !)] |
31 |
CHAM830108 | A parameter of charge transfer donor capability (Charton-Charton, 1983)[(Pro !)] |
32 |
CHOC750101 | Average volume of buried residue (Chothia, 1975)[(Arg missing)] |
33 |
CHOC760101 | Residue accessible surface area in tripeptide (Chothia, 1976) |
34 |
CHOC760102 | Residue accessible surface area in folded protein (Chothia, 1976) |
35 |
CHOC760103 | Proportion of residues 95% buried (Chothia, 1976) |
36 |
CHOC760104 | Proportion of residues 100% buried (Chothia, 1976)[(normalized by the total number)] |
37 |
CHOP780101 | Normalized frequency of beta-turn (Chou-Fasman, 1978a) |
38 |
CHOP780201 | Normalized frequency of alpha-helix (Chou-Fasman, 1978b) |
39 |
CHOP780202 | Normalized frequency of beta-sheet (Chou-Fasman, 1978b) |
40 |
CHOP780203 | Normalized frequency of beta-turn (Chou-Fasman, 1978b) |
41 |
CHOP780204 | Normalized frequency of N-terminal helix (Chou-Fasman, 1978b) |
42 |
CHOP780205 | Normalized frequency of C-terminal helix (Chou-Fasman, 1978b) |
43 |
CHOP780206 | Normalized frequency of N-terminal non helical region (Chou-Fasman, 1978b) |
44 |
CHOP780207 | Normalized frequency of C-terminal non helical region (Chou-Fasman, 1978b) |
45 |
CHOP780208 | Normalized frequency of N-terminal beta-sheet (Chou-Fasman, 1978b) |
46 |
CHOP780209 | Normalized frequency of C-terminal beta-sheet (Chou-Fasman, 1978b) |
47 |
CHOP780210 | Normalized frequency of N-terminal non beta region (Chou-Fasman, 1978b) |
48 |
CHOP780211 | Normalized frequency of C-terminal non beta region (Chou-Fasman, 1978b) |
49 |
CHOP780212 | Frequency of the 1st residue in turn (Chou-Fasman, 1978b) |
50 |
CHOP780213 | Frequency of the 2nd residue in turn (Chou-Fasman, 1978b) |
51 |
CHOP780214 | Frequency of the 3rd residue in turn (Chou-Fasman, 1978b) |
52 |
CHOP780215 | Frequency of the 4th residue in turn (Chou-Fasman, 1978b) |
53 |
CHOP780216 | Normalized frequency of the 2nd and 3rd residues in turn (Chou-Fasman, 1978b) |
54 |
CIDH920101 | Normalized hydrophobicity scales for alpha-proteins (Cid et al., 1992) |
55 |
CIDH920102 | Normalized hydrophobicity scales for beta-proteins (Cid et al., 1992) |
56 |
CIDH920103 | Normalized hydrophobicity scales for alpha+beta-proteins (Cid et al., 1992) |
57 |
CIDH920104 | Normalized hydrophobicity scales for alpha/beta-proteins (Cid et al., 1992) |
58 |
CIDH920105 | Normalized average hydrophobicity scales (Cid et al., 1992) |
59 |
COHE430101 | Partial specific volume (Cohn-Edsall, 1943) |
60 |
CRAJ730101 | Normalized frequency of middle helix (Crawford et al., 1973)[Reported values normalized by the total percentage] |
61 |
CRAJ730102 | Normalized frequency of beta-sheet (Crawford et al., 1973)[Reported values normalized by the total percentage] |
62 |
CRAJ730103 | Normalized frequency of turn (Crawford et al., 1973)[Reported values normalized by the total percentage] |
63 |
DAWD720101 | Size (Dawson, 1972) |
64 |
DAYM780101 | Amino acid composition (Dayhoff et al., 1978a) |
65 |
DAYM780201 | Relative mutability (Dayhoff et al., 1978b) |
66 |
DESM900101 | Membrane preference for cytochrome b: MPH89 (Degli Esposti et al., 1990) |
67 |
DESM900102 | Average membrane preference: AMP07 (Degli Esposti et al., 1990) |
68 |
EISD840101 | Consensus normalized hydrophobicity scale (Eisenberg, 1984)[Original references: Eisenberg, D., Weiss, R.M., Terwilliger, T.C., and Wilcox, W. Faraday Symp. Chem. Soc. 17, 109-120 (1982) Eisenberg, D., Weiss, R.M., and Terwilliger, T.C. The hydrophobic moment detects periodicity in protein hydrophobicity Proc. Natl. Acad. Sci. USA 81, 140-144 (1984)] |
69 |
EISD860101 | Solvation free energy (Eisenberg-McLachlan, 1986) |
70 |
EISD860102 | Atom-based hydrophobic moment (Eisenberg-McLachlan, 1986) |
71 |
EISD860103 | Direction of hydrophobic moment (Eisenberg-McLachlan, 1986)[(Gly Ala missing)] |
72 |
FASG760101 | Molecular weight (Fasman, 1976) |
73 |
FASG760102 | Melting point (Fasman, 1976) |
74 |
FASG760103 | Optical rotation (Fasman, 1976) |
75 |
FASG760104 | pK-N (Fasman, 1976) |
76 |
FASG760105 | pK-C (Fasman, 1976) |
77 |
FAUJ830101 | Hydrophobic parameter pi (Fauchere-Pliska, 1983) |
78 |
FAUJ880101 | Graph shape index (Fauchere et al., 1988)[Original reference: Kier, L.B. Quant. Struct. Act. Relat. 6, 117-122 (1987)] |
79 |
FAUJ880102 | Smoothed upsilon steric parameter (Fauchere et al., 1988)[(Pro missing) Original reference of these two data: Fauchere, L.J. In "QSAR in Design of Bioactive Compounds", (Kuchar, M., ed.), Prous, Barcelona pp.135-144 (1984)] |
80 |
FAUJ880103 | Normalized van der Waals volume (Fauchere et al., 1988)[(Pro !) Original reference of these two data: Fauchere, L.J. In "QSAR in Design of Bioactive Compounds", (Kuchar, M., ed.), Prous, Barcelona pp.135-144 (1984)] |
81 |
FAUJ880104 | STERIMOL length of the side chain (Fauchere et al., 1988)[(Pro !) Original reference of these three data: Verloop, A. In "IUPAC, Pesticide Chemistry", Vol.1 (Miyamoto, J. and Kearney, P.C., eds.),Pergamon, Oxford pp.339-334 (1983)] |
82 |
FAUJ880105 | STERIMOL minimum width of the side chain (Fauchere et al., 1988)[(Pro !) Original reference of these three data: Verloop, A. In "IUPAC, Pesticide Chemistry", Vol.1 (Miyamoto, J. and Kearney, P.C., eds.),Pergamon, Oxford pp.339-334 (1983)] |
83 |
FAUJ880106 | STERIMOL maximum width of the side chain (Fauchere et al., 1988)[Original reference of these three data: Verloop, A. In "IUPAC, Pesticide Chemistry", Vol.1 (Miyamoto, J. and Kearney, P.C., eds.),Pergamon, Oxford pp.339-334 (1983)] |
84 |
FAUJ880107 | N.m.r. chemical shift of alpha-carbon (Fauchere et al., 1988)[Original reference: Fauchere, J.L. and Lauterwein, J. Quant. Struct. Act. Rel. 4, 11-13 (1985)] |
85 |
FAUJ880108 | Localized electrical effect (Fauchere et al., 1988)[(Pro missing) Original reference: Charton, M. and Charton, B.I. J. Theor. Biol. 102, 121-134 (1983)] |
86 |
FAUJ880109 | Number of hydrogen bond donors (Fauchere et al., 1988)[Original reference of these two data: IUPAC-IUB Joint Commission on Biochemical Nomenclature Eur. J. Biochem. 138, 9-37 (1984)] |
87 |
FAUJ880110 | Number of full nonbonding orbitals (Fauchere et al., 1988)[Original reference of these two data: IUPAC-IUB Joint Commission on Biochemical Nomenclature Eur. J. Biochem. 138, 9-37 (1984)] |
88 |
FAUJ880111 | Positive charge (Fauchere et al., 1988) |
89 |
FAUJ880112 | Negative charge (Fauchere et al., 1988) |
90 |
FAUJ880113 | pK-a(RCOOH) (Fauchere et al., 1988)[(Pro missing)] |
91 |
FINA770101 | Helix-coil equilibrium constant (Finkelstein-Ptitsyn, 1977)[(Pro 0.096)] |
92 |
FINA910101 | Helix initiation parameter at posision i-1 (Finkelstein et al., 1991)[In these four data, each of Arg, Asp, Glu, His and Lys has two value. See comment lines. Arg pH < 12 ( 1 when pH > 12 ) Asp pH > 4 ( 1.7 when pH < 4 ) Glu pH > 4.3 ( 1 when pH < 4.3 ) His pH > 6.3 ( 0.7 when pH < 6.3 ) Lys pH < 10.5 ( 1 when pH > 10.5 )] |
93 |
FINA910102 | Helix initiation parameter at posision i,i+1,i+2 (Finkelstein et al., 1991)[In these four data, each of Arg, Asp, Glu, His and Lys has two value. See comment lines. Arg pH < 12 ( 1 when pH > 12 ) Asp pH > 4 ( 1 when pH < 4 ) Glu pH > 4.3 ( 1 when pH < 4.3 ) His pH > 6.3 ( 0.7 when pH < 6.3 ) Lys pH < 10.5 ( 1 when pH > 10.5 ) (Pro !)] |
94 |
FINA910103 | Helix termination parameter at posision j-2,j-1,j (Finkelstein et al., 1991)[In these four data, each of Arg, Asp, Glu, His and Lys has two value. See comment lines. Arg pH < 12 ( 1 when pH > 12 ) Asp pH > 4 ( 1 when pH < 4 ) Glu pH > 4.3 ( 1 when pH < 4.3 ) His pH > 6.3 ( 1.7 when pH < 6.3 ) Lys pH < 10.5 ( 1 when pH > 10.5 )] |
95 |
FINA910104 | Helix termination parameter at posision j+1 (Finkelstein et al., 1991)[In these four data, each of Arg, Asp, Glu, His and Lys has two value. See comment lines. Arg pH < 12 ( 1 when pH > 12 ) Asp pH > 4 ( 1 when pH < 4 ) Glu pH > 4.3 ( 1 when pH < 4.3 ) His pH > 6.3 ( 1.7 when pH < 6.3 ) Lys pH < 10.5 ( 1 when pH > 10.5 )] |
96 |
GARJ730101 | Partition coefficient (Garel et al., 1973) |
97 |
GEIM800101 | Alpha-helix indices (Geisow-Roberts, 1980) |
98 |
GEIM800102 | Alpha-helix indices for alpha-proteins (Geisow-Roberts, 1980) |
99 |
GEIM800103 | Alpha-helix indices for beta-proteins (Geisow-Roberts, 1980) |
100 |
GEIM800104 | Alpha-helix indices for alpha/beta-proteins (Geisow-Roberts, 1980) |
101 |
GEIM800105 | Beta-strand indices (Geisow-Roberts, 1980) |
102 |
GEIM800106 | Beta-strand indices for beta-proteins (Geisow-Roberts, 1980) |
103 |
GEIM800107 | Beta-strand indices for alpha/beta-proteins (Geisow-Roberts, 1980) |
104 |
GEIM800108 | Aperiodic indices (Geisow-Roberts, 1980) |
105 |
GEIM800109 | Aperiodic indices for alpha-proteins (Geisow-Roberts, 1980) |
106 |
GEIM800110 | Aperiodic indices for beta-proteins (Geisow-Roberts, 1980) |
107 |
GEIM800111 | Aperiodic indices for alpha/beta-proteins (Geisow-Roberts, 1980) |
108 |
GOLD730101 | Hydrophobicity factor (Goldsack-Chalifoux, 1973)[(Asn Gln !)] |
109 |
GOLD730102 | Residue volume (Goldsack-Chalifoux, 1973)[(Asn Gln 8.8)] |
110 |
GRAR740101 | Composition (Grantham, 1974)[(Atomic weight ratio of noncarbons to carbons in the side chain)] |
111 |
GRAR740102 | Polarity (Grantham, 1974) |
112 |
GRAR740103 | Volume (Grantham, 1974) |
113 |
GUYH850101 | Partition energy (Guy, 1985) |
114 |
HOPA770101 | Hydration number (Hopfinger, 1971), Cited by Charton-Charton (1982)[Cited by Charton-Charton (1982) (Cys !)] |
115 |
HOPT810101 | Hydrophilicity value (Hopp-Woods, 1981) |
116 |
HUTJ700101 | Heat capacity (Hutchens, 1970) |
117 |
HUTJ700102 | Absolute entropy (Hutchens, 1970) |
118 |
HUTJ700103 | Entropy of formation (Hutchens, 1970) |
119 |
ISOY800101 | Normalized relative frequency of alpha-helix (Isogai et al., 1980)[Recalculated by Kidera using a different set of proteins] |
120 |
ISOY800102 | Normalized relative frequency of extended structure (Isogai et al., 1980)[Recalculated by Kidera using a different set of proteins] |
121 |
ISOY800103 | Normalized relative frequency of bend (Isogai et al., 1980)[Recalculated by Kidera using a different set of proteins] |
122 |
ISOY800104 | Normalized relative frequency of bend R (Isogai et al., 1980)[Recalculated by Kidera using a different set of proteins] |
123 |
ISOY800105 | Normalized relative frequency of bend S (Isogai et al., 1980)[Recalculated by Kidera using a different set of proteins] |
124 |
ISOY800106 | Normalized relative frequency of helix end (Isogai et al., 1980)[Recalculated by Kidera using a different set of proteins] |
125 |
ISOY800107 | Normalized relative frequency of double bend (Isogai et al., 1980)[Recalculated by Kidera using a different set of proteins] |
126 |
ISOY800108 | Normalized relative frequency of coil (Isogai et al., 1980)[Recalculated by Kidera using a different set of proteins] |
127 |
JANJ780101 | Average accessible surface area (Janin et al., 1978) |
128 |
JANJ780102 | Percentage of buried residues (Janin et al., 1978) |
129 |
JANJ780103 | Percentage of exposed residues (Janin et al., 1978) |
130 |
JANJ790101 | Ratio of buried and accessible molar fractions (Janin, 1979) |
131 |
JANJ790102 | Transfer free energy (Janin, 1979) |
132 |
JOND750101 | Hydrophobicity (Jones, 1975) |
133 |
JOND750102 | pK (-COOH) (Jones, 1975)[Original reference of this data: McMeekin, T.L., Groves, M.L., and Hipp, N.J. In "Amino Acids and Serum Proteins" (Stekol, J.A., ed.), American Chemical Society, Washington, D.C., p. 54 (1964)] |
134 |
JOND920101 | Relative frequency of occurrence (Jones et al., 1992) |
135 |
JOND920102 | Relative mutability (Jones et al., 1992) |
136 |
JUKT750101 | Amino acid distribution (Jukes et al., 1975) |
137 |
JUNJ780101 | Sequence frequency (Jungck, 1978) |
138 |
KANM800101 | Average relative probability of helix (Kanehisa-Tsong, 1980) |
139 |
KANM800102 | Average relative probability of beta-sheet (Kanehisa-Tsong, 1980) |
140 |
KANM800103 | Average relative probability of inner helix (Kanehisa-Tsong, 1980) |
141 |
KANM800104 | Average relative probability of inner beta-sheet (Kanehisa-Tsong, 1980) |
142 |
KARP850101 | Flexibility parameter for no rigid neighbors (Karplus-Schulz, 1985) |
143 |
KARP850102 | Flexibility parameter for one rigid neighbor (Karplus-Schulz, 1985) |
144 |
KARP850103 | Flexibility parameter for two rigid neighbors (Karplus-Schulz, 1985) |
145 |
KHAG800101 | The Kerr-constant increments (Khanarian-Moore, 1980)[(Cys Lys Tyr !)] |
146 |
KLEP840101 | Net charge (Klein et al., 1984) |
147 |
KRIW710101 | Side chain interaction parameter (Krigbaum-Rubin, 1971) |
148 |
KRIW790101 | Side chain interaction parameter (Krigbaum-Komoriya, 1979) |
149 |
KRIW790102 | Fraction of site occupied by water (Krigbaum-Komoriya, 1979) |
150 |
KRIW790103 | Side chain volume (Krigbaum-Komoriya, 1979)[(Gly Pro 7.8)] |
151 |
KYTJ820101 | Hydropathy index (Kyte-Doolittle, 1982) |
152 |
LAWE840101 | Transfer free energy, CHP/water (Lawson et al., 1984) |
153 |
LEVM760101 | Hydrophobic parameter (Levitt, 1976) |
154 |
LEVM760102 | Distance between C-alpha and centroid of side chain (Levitt, 1976) |
155 |
LEVM760103 | Side chain angle theta(AAR) (Levitt, 1976)[(Gly missing)] |
156 |
LEVM760104 | Side chain torsion angle phi(AAAR) (Levitt, 1976) |
157 |
LEVM760105 | Radius of gyration of side chain (Levitt, 1976)[(Gly 0.089)] |
158 |
LEVM760106 | van der Waals parameter R0 (Levitt, 1976) |
159 |
LEVM760107 | van der Waals parameter epsilon (Levitt, 1976) |
160 |
LEVM780101 | Normalized frequency of alpha-helix, with weights (Levitt, 1978) |
161 |
LEVM780102 | Normalized frequency of beta-sheet, with weights (Levitt, 1978) |
162 |
LEVM780103 | Normalized frequency of reverse turn, with weights (Levitt, 1978) |
163 |
LEVM780104 | Normalized frequency of alpha-helix, unweighted (Levitt, 1978) |
164 |
LEVM780105 | Normalized frequency of beta-sheet, unweighted (Levitt, 1978) |
165 |
LEVM780106 | Normalized frequency of reverse turn, unweighted (Levitt, 1978) |
166 |
LEWP710101 | Frequency of occurrence in beta-bends (Lewis et al., 1971) |
167 |
LIFS790101 | Conformational preference for all beta-strands (Lifson-Sander, 1979) |
168 |
LIFS790102 | Conformational preference for parallel beta-strands (Lifson-Sander, 1979) |
169 |
LIFS790103 | Conformational preference for antiparallel beta-strands (Lifson-Sander, 1979) |
170 |
MANP780101 | Average surrounding hydrophobicity (Manavalan-Ponnuswamy, 1978) |
171 |
MAXF760101 | Normalized frequency of alpha-helix (Maxfield-Scheraga, 1976)[Recalculated by Kidera using a different set of proteins Reported values normalized by the total number] |
172 |
MAXF760102 | Normalized frequency of extended structure (Maxfield-Scheraga, 1976)[Recalculated by Kidera using a different set of proteins Reported values normalized by the total number] |
173 |
MAXF760103 | Normalized frequency of zeta R (Maxfield-Scheraga, 1976)[Recalculated by Kidera using a different set of proteins Reported values normalized by the total number] |
174 |
MAXF760104 | Normalized frequency of left-handed alpha-helix (Maxfield-Scheraga, 1976)[Recalculated by Kidera using a different set of proteins Reported values normalized by the total number] |
175 |
MAXF760105 | Normalized frequency of zeta L (Maxfield-Scheraga, 1976)[Recalculated by Kidera using a different set of proteins Reported values normalized by the total number] |
176 |
MAXF760106 | Normalized frequency of alpha region (Maxfield-Scheraga, 1976)[Recalculated by Kidera using a different set of proteins Reported values normalized by the total number] |
177 |
MCMT640101 | Refractivity (McMeekin et al., 1964), Cited by Jones (1975) |
178 |
MEEJ800101 | Retention coefficient in HPLC, pH7.4 (Meek, 1980) |
179 |
MEEJ800102 | Retention coefficient in HPLC, pH2.1 (Meek, 1980) |
180 |
MEEJ810101 | Retention coefficient in NaClO4 (Meek-Rossetti, 1981) |
181 |
MEEJ810102 | Retention coefficient in NaH2PO4 (Meek-Rossetti, 1981) |
182 |
MEIH800101 | Average reduced distance for C-alpha (Meirovitch et al., 1980)[Database taken from group C] |
183 |
MEIH800102 | Average reduced distance for side chain (Meirovitch et al., 1980)[Database taken from group C (Gly 0.067)] |
184 |
MEIH800103 | Average side chain orientation angle (Meirovitch et al., 1980)[Database taken from group C (Gly 7.4)] |
185 |
MIYS850101 | Effective partition energy (Miyazawa-Jernigan, 1985) |
186 |
NAGK730101 | Normalized frequency of alpha-helix (Nagano, 1973) |
187 |
NAGK730102 | Normalized frequency of bata-structure (Nagano, 1973) |
188 |
NAGK730103 | Normalized frequency of coil (Nagano, 1973) |
189 |
NAKH900101 | AA composition of total proteins (Nakashima et al., 1990) |
190 |
NAKH900102 | SD of AA composition of total proteins (Nakashima et al., 1990) |
191 |
NAKH900103 | AA composition of mt-proteins (Nakashima et al., 1990) |
192 |
NAKH900104 | Normalized composition of mt-proteins (Nakashima et al., 1990) |
193 |
NAKH900105 | AA composition of mt-proteins from animal (Nakashima et al., 1990) |
194 |
NAKH900106 | Normalized composition from animal (Nakashima et al., 1990) |
195 |
NAKH900107 | AA composition of mt-proteins from fungi and plant (Nakashima et al., 1990) |
196 |
NAKH900108 | Normalized composition from fungi and plant (Nakashima et al., 1990) |
197 |
NAKH900109 | AA composition of membrane proteins (Nakashima et al., 1990) |
198 |
NAKH900110 | Normalized composition of membrane proteins (Nakashima et al., 1990) |
199 |
NAKH900111 | Transmembrane regions of non-mt-proteins (Nakashima et al., 1990) |
200 |
NAKH900112 | Transmembrane regions of mt-proteins (Nakashima et al., 1990) |
201 |
NAKH900113 | Ratio of average and computed composition (Nakashima et al., 1990) |
202 |
NAKH920101 | AA composition of CYT of single-spanning proteins (Nakashima-Nishikawa, 1992) |
203 |
NAKH920102 | AA composition of CYT2 of single-spanning proteins (Nakashima-Nishikawa, 1992) |
204 |
NAKH920103 | AA composition of EXT of single-spanning proteins (Nakashima-Nishikawa, 1992) |
205 |
NAKH920104 | AA composition of EXT2 of single-spanning proteins (Nakashima-Nishikawa, 1992) |
206 |
NAKH920105 | AA composition of MEM of single-spanning proteins (Nakashima-Nishikawa, 1992) |
207 |
NAKH920106 | AA composition of CYT of multi-spanning proteins (Nakashima-Nishikawa, 1992) |
208 |
NAKH920107 | AA composition of EXT of multi-spanning proteins (Nakashima-Nishikawa, 1992) |
209 |
NAKH920108 | AA composition of MEM of multi-spanning proteins (Nakashima-Nishikawa, 1992) |
210 |
NISK800101 | 8 A contact number (Nishikawa-Ooi, 1980) |
211 |
NISK860101 | 14 A contact number (Nishikawa-Ooi, 1986)[Values supplied by the author] |
212 |
NOZY710101 | Transfer energy, organic solvent/water (Nozaki-Tanford, 1971)[Missing values filled with zeros] |
213 |
OOBM770101 | Average non-bonded energy per atom (Oobatake-Ooi, 1977)[Last two calcualted by Kidera |
214 |
OOBM770102 | Short and medium range non-bonded energy per atom (Oobatake-Ooi, 1977)[Last two calcualted by Kidera |
215 |
OOBM770103 | Long range non-bonded energy per atom (Oobatake-Ooi, 1977)[Last two calcualted by Kidera |
216 |
OOBM770104 | Average non-bonded energy per residue (Oobatake-Ooi, 1977)[Last two calcualted by Kidera |
217 |
OOBM770105 | Short and medium range non-bonded energy per residue (Oobatake-Ooi, 1977)[Last two calcualted by Kidera |
218 |
OOBM850101 | Optimized beta-structure-coil equilibrium constant (Oobatake et al., 1985) |
219 |
OOBM850102 | Optimized propensity to form reverse turn (Oobatake et al., 1985) |
220 |
OOBM850103 | Optimized transfer energy parameter (Oobatake et al., 1985) |
221 |
OOBM850104 | Optimized average non-bonded energy per atom (Oobatake et al., 1985) |
222 |
OOBM850105 | Optimized side chain interaction parameter (Oobatake et al., 1985) |
223 |
PALJ810101 | Normalized frequency of alpha-helix from LG (Palau et al., 1981)[LG :a set of protein samples formed by 44 proteins. CF :a set of protein samples formed by 33 proteins.] |
224 |
PALJ810102 | Normalized frequency of alpha-helix from CF (Palau et al., 1981)[LG :a set of protein samples formed by 44 proteins. CF :a set of protein samples formed by 33 proteins.] |
225 |
PALJ810103 | Normalized frequency of beta-sheet from LG (Palau et al., 1981)[LG :a set of protein samples formed by 44 proteins. CF :a set of protein samples formed by 33 proteins.] |
226 |
PALJ810104 | Normalized frequency of beta-sheet from CF (Palau et al., 1981)[LG :a set of protein samples formed by 44 proteins. CF :a set of protein samples formed by 33 proteins.] |
227 |
PALJ810105 | Normalized frequency of turn from LG (Palau et al., 1981)[LG :a set of protein samples formed by 44 proteins. CF :a set of protein samples formed by 33 proteins.] |
228 |
PALJ810106 | Normalized frequency of turn from CF (Palau et al., 1981)[LG :a set of protein samples formed by 44 proteins. CF :a set of protein samples formed by 33 proteins.] |
229 |
PALJ810107 | Normalized frequency of alpha-helix in all-alpha class (Palau et al., 1981)[LG :a set of protein samples formed by 44 proteins. CF :a set of protein samples formed by 33 proteins.] |
230 |
PALJ810108 | Normalized frequency of alpha-helix in alpha+beta class (Palau et al., 1981)[LG :a set of protein samples formed by 44 proteins. CF :a set of protein samples formed by 33 proteins.] |
231 |
PALJ810109 | Normalized frequency of alpha-helix in alpha/beta class (Palau et al., 1981)[LG :a set of protein samples formed by 44 proteins. CF :a set of protein samples formed by 33 proteins.] |
232 |
PALJ810110 | Normalized frequency of beta-sheet in all-beta class (Palau et al., 1981)[LG :a set of protein samples formed by 44 proteins. CF :a set of protein samples formed by 33 proteins.] |
233 |
PALJ810111 | Normalized frequency of beta-sheet in alpha+beta class (Palau et al., 1981)[LG :a set of protein samples formed by 44 proteins. CF :a set of protein samples formed by 33 proteins.] |
234 |
PALJ810112 | Normalized frequency of beta-sheet in alpha/beta class (Palau et al., 1981)[LG :a set of protein samples formed by 44 proteins. CF :a set of protein samples formed by 33 proteins.] |
235 |
PALJ810113 | Normalized frequency of turn in all-alpha class (Palau et al., 1981)[LG :a set of protein samples formed by 44 proteins. CF :a set of protein samples formed by 33 proteins. (Arg Cys Leu Trp missing)] |
236 |
PALJ810114 | Normalized frequency of turn in all-beta class (Palau et al., 1981)[LG :a set of protein samples formed by 44 proteins. CF :a set of protein samples formed by 33 proteins. (Met missing)] |
237 |
PALJ810115 | Normalized frequency of turn in alpha+beta class (Palau et al., 1981)[LG :a set of protein samples formed by 44 proteins. CF :a set of protein samples formed by 33 proteins.] |
238 |
PALJ810116 | Normalized frequency of turn in alpha/beta class (Palau et al., 1981)[LG :a set of protein samples formed by 44 proteins. CF :a set of protein samples formed by 33 proteins.] |
239 |
PARJ860101 | HPLC parameter (Parker et al., 1986) |
240 |
PLIV810101 | Partition coefficient (Pliska et al., 1981)[(Arg 0.25)] |
241 |
PONP800101 | Surrounding hydrophobicity in folded form (Ponnuswamy et al., 1980) |
242 |
PONP800102 | Average gain in surrounding hydrophobicity (Ponnuswamy et al., 1980) |
243 |
PONP800103 | Average gain ratio in surrounding hydrophobicity (Ponnuswamy et al., 1980) |
244 |
PONP800104 | Surrounding hydrophobicity in alpha-helix (Ponnuswamy et al., 1980) |
245 |
PONP800105 | Surrounding hydrophobicity in beta-sheet (Ponnuswamy et al., 1980) |
246 |
PONP800106 | Surrounding hydrophobicity in turn (Ponnuswamy et al., 1980) |
247 |
PONP800107 | Accessibility reduction ratio (Ponnuswamy et al., 1980) |
248 |
PONP800108 | Average number of surrounding residues (Ponnuswamy et al., 1980) |
249 |
PRAM820101 | Intercept in regression analysis (Prabhakaran-Ponnuswamy, 1982)[Regression analysis of solvent contact area and spatial position] |
250 |
PRAM820102 | Slope in regression analysis x 1.0E1 (Prabhakaran-Ponnuswamy, 1982)[Regression analysis of solvent contact area and spatial position] |
251 |
PRAM820103 | Correlation coefficient in regression analysis (Prabhakaran-Ponnuswamy, 1982)[Regression analysis of solvent contact area and spatial position] |
252 |
PRAM900101 | Hydrophobicity (Prabhakaran, 1990)[Original references: Engelman, D.M., Steitz, T.A. and Terwilliger, T.C. Annu. Rev. Biophys. Chem. 15, 321-353 (1986)] |
253 |
PRAM900102 | Relative frequency in alpha-helix (Prabhakaran, 1990)[Original reference of these three data: Creighton, T.E. In "Protein Structure and Melecular Properties", (Freeman, W.H., ed.), San Francisco P.235 (1983)] |
254 |
PRAM900103 | Relative frequency in beta-sheet (Prabhakaran, 1990)[Original reference of these three data: Creighton, T.E. In "Protein Structure and Melecular Properties", (Freeman, W.H., ed.), San Francisco P.235 (1983)] |
255 |
PRAM900104 | Relative frequency in reverse-turn (Prabhakaran, 1990)[Original reference of these three data: Creighton, T.E. In "Protein Structure and Melecular Properties", (Freeman, W.H., ed.), San Francisco P.235 (1983)] |
256 |
PTIO830101 | Helix-coil equilibrium constant (Ptitsyn-Finkelstein, 1983)[Charged state for Arg, His, Lys, Asp, and Glu] |
257 |
PTIO830102 | Beta-coil equilibrium constant (Ptitsyn-Finkelstein, 1983)[Charged state for Arg, His, Lys, Asp, and Glu] |
258 |
QIAN880101 | Weights for alpha-helix at the window position of -6 (Qian-Sejnowski, 1988) |
259 |
QIAN880102 | Weights for alpha-helix at the window position of -5 (Qian-Sejnowski, 1988) |
260 |
QIAN880103 | Weights for alpha-helix at the window position of -4 (Qian-Sejnowski, 1988) |
261 |
QIAN880104 | Weights for alpha-helix at the window position of -3 (Qian-Sejnowski, 1988) |
262 |
QIAN880105 | Weights for alpha-helix at the window position of -2 (Qian-Sejnowski, 1988) |
263 |
QIAN880106 | Weights for alpha-helix at the window position of -1 (Qian-Sejnowski, 1988) |
264 |
QIAN880107 | Weights for alpha-helix at the window position of 0 (Qian-Sejnowski, 1988) |
265 |
QIAN880108 | Weights for alpha-helix at the window position of 1 (Qian-Sejnowski, 1988) |
266 |
QIAN880109 | Weights for alpha-helix at the window position of 2 (Qian-Sejnowski, 1988) |
267 |
QIAN880110 | Weights for alpha-helix at the window position of 3 (Qian-Sejnowski, 1988) |
268 |
QIAN880111 | Weights for alpha-helix at the window position of 4 (Qian-Sejnowski, 1988) |
269 |
QIAN880112 | Weights for alpha-helix at the window position of 5 (Qian-Sejnowski, 1988) |
270 |
QIAN880113 | Weights for alpha-helix at the window position of 6 (Qian-Sejnowski, 1988) |
271 |
QIAN880114 | Weights for beta-sheet at the window position of -6 (Qian-Sejnowski, 1988) |
272 |
QIAN880115 | Weights for beta-sheet at the window position of -5 (Qian-Sejnowski, 1988) |
273 |
QIAN880116 | Weights for beta-sheet at the window position of -4 (Qian-Sejnowski, 1988) |
274 |
QIAN880117 | Weights for beta-sheet at the window position of -3 (Qian-Sejnowski, 1988) |
275 |
QIAN880118 | Weights for beta-sheet at the window position of -2 (Qian-Sejnowski, 1988) |
276 |
QIAN880119 | Weights for beta-sheet at the window position of -1 (Qian-Sejnowski, 1988) |
277 |
QIAN880120 | Weights for beta-sheet at the window position of 0 (Qian-Sejnowski, 1988) |
278 |
QIAN880121 | Weights for beta-sheet at the window position of 1 (Qian-Sejnowski, 1988) |
279 |
QIAN880122 | Weights for beta-sheet at the window position of 2 (Qian-Sejnowski, 1988) |
280 |
QIAN880123 | Weights for beta-sheet at the window position of 3 (Qian-Sejnowski, 1988) |
281 |
QIAN880124 | Weights for beta-sheet at the window position of 4 (Qian-Sejnowski, 1988) |
282 |
QIAN880125 | Weights for beta-sheet at the window position of 5 (Qian-Sejnowski, 1988) |
283 |
QIAN880126 | Weights for beta-sheet at the window position of 6 (Qian-Sejnowski, 1988) |
284 |
QIAN880127 | Weights for coil at the window position of -6 (Qian-Sejnowski, 1988) |
285 |
QIAN880128 | Weights for coil at the window position of -5 (Qian-Sejnowski, 1988) |
286 |
QIAN880129 | Weights for coil at the window position of -4 (Qian-Sejnowski, 1988) |
287 |
QIAN880130 | Weights for coil at the window position of -3 (Qian-Sejnowski, 1988) |
288 |
QIAN880131 | Weights for coil at the window position of -2 (Qian-Sejnowski, 1988) |
289 |
QIAN880132 | Weights for coil at the window position of -1 (Qian-Sejnowski, 1988) |
290 |
QIAN880133 | Weights for coil at the window position of 0 (Qian-Sejnowski, 1988) |
291 |
QIAN880134 | Weights for coil at the window position of 1 (Qian-Sejnowski, 1988) |
292 |
QIAN880135 | Weights for coil at the window position of 2 (Qian-Sejnowski, 1988)[(Gin !)] |
293 |
QIAN880136 | Weights for coil at the window position of 3 (Qian-Sejnowski, 1988) |
294 |
QIAN880137 | Weights for coil at the window position of 4 (Qian-Sejnowski, 1988) |
295 |
QIAN880138 | Weights for coil at the window position of 5 (Qian-Sejnowski, 1988) |
296 |
QIAN880139 | Weights for coil at the window position of 6 (Qian-Sejnowski, 1988) |
297 |
RACS770101 | Average reduced distance for C-alpha (Rackovsky-Scheraga, 1977) |
298 |
RACS770102 | Average reduced distance for side chain (Rackovsky-Scheraga, 1977)[(Gly 0.080)] |
299 |
RACS770103 | Side chain orientational preference (Rackovsky-Scheraga, 1977)[(Gly !) (Ratio of the numbers of occurrences in two orientations)] |
300 |
RACS820101 | Average relative fractional occurrence in A0(i) (Rackovsky-Scheraga, 1982) |
301 |
RACS820102 | Average relative fractional occurrence in AR(i) (Rackovsky-Scheraga, 1982) |
302 |
RACS820103 | Average relative fractional occurrence in AL(i) (Rackovsky-Scheraga, 1982) |
303 |
RACS820104 | Average relative fractional occurrence in EL(i) (Rackovsky-Scheraga, 1982) |
304 |
RACS820105 | Average relative fractional occurrence in E0(i) (Rackovsky-Scheraga, 1982) |
305 |
RACS820106 | Average relative fractional occurrence in ER(i) (Rackovsky-Scheraga, 1982) |
306 |
RACS820107 | Average relative fractional occurrence in A0(i-1) (Rackovsky-Scheraga, 1982) |
307 |
RACS820108 | Average relative fractional occurrence in AR(i-1) (Rackovsky-Scheraga, 1982) |
308 |
RACS820109 | Average relative fractional occurrence in AL(i-1) (Rackovsky-Scheraga, 1982) |
309 |
RACS820110 | Average relative fractional occurrence in EL(i-1) (Rackovsky-Scheraga, 1982) |
310 |
RACS820111 | Average relative fractional occurrence in E0(i-1) (Rackovsky-Scheraga, 1982) |
311 |
RACS820112 | Average relative fractional occurrence in ER(i-1) (Rackovsky-Scheraga, 1982) |
312 |
RACS820113 | Value of theta(i) (Rackovsky-Scheraga, 1982) |
313 |
RACS820114 | Value of theta(i-1) (Rackovsky-Scheraga, 1982) |
314 |
RADA880101 | Transfer free energy from chx to wat (Radzicka-Wolfenden, 1988)[(Pro missing)] |
315 |
RADA880102 | Transfer free energy from oct to wat (Radzicka-Wolfenden, 1988)[(Pro Cys Asp missing)] |
316 |
RADA880103 | Transfer free energy from vap to chx (Radzicka-Wolfenden, 1988)[(Pro missing)] |
317 |
RADA880104 | Transfer free energy from chx to oct (Radzicka-Wolfenden, 1988)[(Pro Cys Asp missing)] |
318 |
RADA880105 | Transfer free energy from vap to oct (Radzicka-Wolfenden, 1988)[(Pro Cys Asp missing)] |
319 |
RADA880106 | Accessible surface area (Radzicka-Wolfenden, 1988)[(Pro missing)] |
320 |
RADA880107 | Energy transfer from out to in(95%buried) (Radzicka-Wolfenden, 1988)[(Pro missing)] |
321 |
RADA880108 | Mean polarity (Radzicka-Wolfenden, 1988)[(Pro missing)] |
322 |
RICJ880101 | Relative preference value at N" (Richardson-Richardson, 1988) |
323 |
RICJ880102 | Relative preference value at N' (Richardson-Richardson, 1988) |
324 |
RICJ880103 | Relative preference value at N-cap (Richardson-Richardson, 1988) |
325 |
RICJ880104 | Relative preference value at N1 (Richardson-Richardson, 1988) |
326 |
RICJ880105 | Relative preference value at N2 (Richardson-Richardson, 1988) |
327 |
RICJ880106 | Relative preference value at N3 (Richardson-Richardson, 1988) |
328 |
RICJ880107 | Relative preference value at N4 (Richardson-Richardson, 1988) |
329 |
RICJ880108 | Relative preference value at N5 (Richardson-Richardson, 1988) |
330 |
RICJ880109 | Relative preference value at Mid (Richardson-Richardson, 1988) |
331 |
RICJ880110 | Relative preference value at C5 (Richardson-Richardson, 1988) |
332 |
RICJ880111 | Relative preference value at C4 (Richardson-Richardson, 1988) |
333 |
RICJ880112 | Relative preference value at C3 (Richardson-Richardson, 1988) |
334 |
RICJ880113 | Relative preference value at C2 (Richardson-Richardson, 1988) |
335 |
RICJ880114 | Relative preference value at C1 (Richardson-Richardson, 1988) |
336 |
RICJ880115 | Relative preference value at C-cap (Richardson-Richardson, 1988) |
337 |
RICJ880116 | Relative preference value at C' (Richardson-Richardson, 1988) |
338 |
RICJ880117 | Relative preference value at C" (Richardson-Richardson, 1988) |
339 |
ROBB760101 | Information measure for alpha-helix (Robson-Suzuki, 1976) |
340 |
ROBB760102 | Information measure for N-terminal helix (Robson-Suzuki, 1976) |
341 |
ROBB760103 | Information measure for middle helix (Robson-Suzuki, 1976) |
342 |
ROBB760104 | Information measure for C-terminal helix (Robson-Suzuki, 1976) |
343 |
ROBB760105 | Information measure for extended (Robson-Suzuki, 1976) |
344 |
ROBB760106 | Information measure for pleated-sheet (Robson-Suzuki, 1976) |
345 |
ROBB760107 | Information measure for extended without H-bond (Robson-Suzuki, 1976) |
346 |
ROBB760108 | Information measure for turn (Robson-Suzuki, 1976) |
347 |
ROBB760109 | Information measure for N-terminal turn (Robson-Suzuki, 1976) |
348 |
ROBB760110 | Information measure for middle turn (Robson-Suzuki, 1976) |
349 |
ROBB760111 | Information measure for C-terminal turn (Robson-Suzuki, 1976) |
350 |
ROBB760112 | Information measure for coil (Robson-Suzuki, 1976) |
351 |
ROBB760113 | Information measure for loop (Robson-Suzuki, 1976) |
352 |
ROBB790101 | Hydration free energy (Robson-Osguthorpe, 1979)[(Gly 0.67)] |
353 |
ROSG850101 | Mean area buried on transfer (Rose et al., 1985) |
354 |
ROSG850102 | Mean fractional area loss (Rose et al., 1985) |
355 |
ROSM880101 | Side chain hydropathy, uncorrected for solvation (Roseman, 1988) |
356 |
ROSM880102 | Side chain hydropathy, corrected for solvation (Roseman, 1988) |
357 |
ROSM880103 | Loss of Side chain hydropathy by helix formation (Roseman, 1988) |
358 |
SIMZ760101 | Transfer free energy (Simon, 1976), Cited by Charton-Charton (1982)[Cited by Charton-Charton (1982)] |
359 |
SNEP660101 | Principal component I (Sneath, 1966) |
360 |
SNEP660102 | Principal component II (Sneath, 1966) |
361 |
SNEP660103 | Principal component III (Sneath, 1966) |
362 |
SNEP660104 | Principal component IV (Sneath, 1966) |
363 |
SUEM840101 | Zimm-Bragg parameter s at 20 C (Sueki et al., 1984)[Charged state for Arg, His, Asp, and Glu (Cys Pro 0.100)] |
364 |
SUEM840102 | Zimm-Bragg parameter sigma x 1.0E4 (Sueki et al., 1984)[Charged state for Arg, His, Asp, and Glu (Cys Pro !)] |
365 |
SWER830101 | Optimal matching hydrophobicity (Sweet-Eisenberg, 1983) |
366 |
TANS770101 | Normalized frequency of alpha-helix (Tanaka-Scheraga, 1977)[Recalculated by Kidera as normalized frequencies] |
367 |
TANS770102 | Normalized frequency of isolated helix (Tanaka-Scheraga, 1977)[Recalculated by Kidera as normalized frequencies] |
368 |
TANS770103 | Normalized frequency of extended structure (Tanaka-Scheraga, 1977)[Recalculated by Kidera as normalized frequencies] |
369 |
TANS770104 | Normalized frequency of chain reversal R (Tanaka-Scheraga, 1977)[Recalculated by Kidera as normalized frequencies] |
370 |
TANS770105 | Normalized frequency of chain reversal S (Tanaka-Scheraga, 1977)[Recalculated by Kidera as normalized frequencies] |
371 |
TANS770106 | Normalized frequency of chain reversal D (Tanaka-Scheraga, 1977)[Recalculated by Kidera as normalized frequencies] |
372 |
TANS770107 | Normalized frequency of left-handed helix (Tanaka-Scheraga, 1977)[Recalculated by Kidera as normalized frequencies] |
373 |
TANS770108 | Normalized frequency of zeta R (Tanaka-Scheraga, 1977)[Recalculated by Kidera as normalized frequencies] |
374 |
TANS770109 | Normalized frequency of coil (Tanaka-Scheraga, 1977)[Recalculated by Kidera as normalized frequencies] |
375 |
TANS770110 | Normalized frequency of chain reversal (Tanaka-Scheraga, 1977)[Recalculated by Kidera as normalized frequencies] |
376 |
VASM830101 | Relative population of conformational state A (Vasquez et al., 1983) |
377 |
VASM830102 | Relative population of conformational state C (Vasquez et al., 1983) |
378 |
VASM830103 | Relative population of conformational state E (Vasquez et al., 1983)[(Pro !)] |
379 |
VELV850101 | Electron-ion interaction potential (Veljkovic et al., 1985) |
380 |
VENT840101 | Bitterness (Venanzi, 1984) |
381 |
VHEG790101 | Transfer free energy to lipophilic phase (von Heijne-Blomberg, 1979) |
382 |
WARP780101 | Average interactions per side chain atom (Warme-Morgan, 1978)[(Gly 0.81)] |
383 |
WEBA780101 | RF value in high salt chromatography (Weber-Lacey, 1978) |
384 |
WERD780101 | Propensity to be buried inside (Wertz-Scheraga, 1978)[Adjusted values] |
385 |
WERD780102 | Free energy change of epsilon(i) to epsilon(ex) (Wertz-Scheraga, 1978)[Adjusted values] |
386 |
WERD780103 | Free energy change of alpha(Ri) to alpha(Rh) (Wertz-Scheraga, 1978)[Adjusted values (Met !)] |
387 |
WERD780104 | Free energy change of epsilon(i) to alpha(Rh) (Wertz-Scheraga, 1978)[Adjusted values] |
388 |
WOEC730101 | Polar requirement (Woese, 1973) |
389 |
WOLR810101 | Hydration potential (Wolfenden et al., 1981)[(Pro 2.9)] |
390 |
WOLS870101 | Principal property value z1 (Wold et al., 1987) |
391 |
WOLS870102 | Principal property value z2 (Wold et al., 1987) |
392 |
WOLS870103 | Principal property value z3 (Wold et al., 1987) |
393 |
YUTK870101 | Unfolding Gibbs energy in water, pH7.0 (Yutani et al., 1987)[(Arg missing)] |
394 |
YUTK870102 | Unfolding Gibbs energy in water, pH9.0 (Yutani et al., 1987)[(Arg missing)] |
395 |
YUTK870103 | Activation Gibbs energy of unfolding, pH7.0 (Yutani et al., 1987)[(Arg missing)] |
396 |
YUTK870104 | Activation Gibbs energy of unfolding, pH9.0 (Yutani et al., 1987)[(Arg missing)] |
397 |
ZASB820101 | Dependence of partition coefficient on ionic strength (Zaslavsky et al., 1982) |
398 |
ZIMJ680101 | Hydrophobicity (Zimmerman et al., 1968) |
399 |
ZIMJ680102 | Bulkiness (Zimmerman et al., 1968) |
400 |
ZIMJ680103 | Polarity (Zimmerman et al., 1968) |
401 |
ZIMJ680104 | Isoelectric point (Zimmerman et al., 1968) |
402 |
ZIMJ680105 | RF rank (Zimmerman et al., 1968) |
403 |
AURR980101 | Normalized positional residue frequency at helix termini N4'(Aurora and Rose, 1998) |
404 |
AURR980102 | Normalized positional residue frequency at helix termini N"' (Aurora and Rose, 1998) |
405 |
AURR980103 | Normalized positional residue frequency at helix termini N" (Aurora and Rose, 1998) |
406 |
AURR980104 | Normalized positional residue frequency at helix termini N'(Aurora and Rose, 1998) |
407 |
AURR980105 | Normalized positional residue frequency at helix termini Nc (Aurora and Rose, 1998) |
408 |
AURR980106 | Normalized positional residue frequency at helix termini N1 (Aurora and Rose, 1998) |
409 |
AURR980107 | Normalized positional residue frequency at helix termini N2 (Aurora and Rose, 1998) |
410 |
AURR980108 | Normalized positional residue frequency at helix termini N3 (Aurora and Rose, 1998) |
411 |
AURR980109 | Normalized positional residue frequency at helix termini N4 (Aurora and Rose, 1998) |
412 |
AURR980110 | Normalized positional residue frequency at helix termini N5 (Aurora and Rose, 1998) |
413 |
AURR980111 | Normalized positional residue frequency at helix termini C5 (Aurora and Rose, 1998) |
414 |
AURR980112 | Normalized positional residue frequency at helix termini C4 (Aurora and Rose, 1998) |
415 |
AURR980113 | Normalized positional residue frequency at helix termini C3 (Aurora and Rose, 1998) |
416 |
AURR980114 | Normalized positional residue frequency at helix termini C2 (Aurora and Rose, 1998) |
417 |
AURR980115 | Normalized positional residue frequency at helix termini C1 (Aurora and Rose, 1998) |
418 |
AURR980116 | Normalized positional residue frequency at helix termini Cc (Aurora and Rose, 1998) |
419 |
AURR980117 | Normalized positional residue frequency at helix termini C' (Aurora and Rose, 1998) |
420 |
AURR980118 | Normalized positional residue frequency at helix termini C" (Aurora and Rose, 1998) |
421 |
AURR980119 | Normalized positional residue frequency at helix termini C"' (Aurora and Rose, 1998) |
422 |
AURR980120 | Normalized positional residue frequency at helix termini C4' (Aurora and Rose, 1998) |
423 |
ONEK900101 | Delta G values for the peptides extrapolated to 0 M urea (O'Neil and DeGrado, 1990) |
424 |
ONEK900102 | Helix formation parameters (delta delta G) (O'Neil and DeGrado, 1990) |
425 |
VINM940101 | Normalized flexibility parameters (B-values), average (Vihinen et al., 1994) |
426 |
VINM940102 | Normalized flexibility parameters (B-values) for each residue surrounded by |
427 |
VINM940103 | Normalized flexibility parameters (B-values) for each residue surrounded by |
428 |
VINM940104 | Normalized flexibility parameters (B-values) for each residue surrounded by |
429 |
MUNV940101 | Free energy in alpha-helical conformation (Munoz and Serrano et al., 1994) |
430 |
MUNV940102 | Free energy in alpha-helical region (Munoz and Serrano et al., 1994) |
431 |
MUNV940103 | Free energy in beta-strand conformation (Munoz and Serrano et al., 1994) |
432 |
MUNV940104 | Free energy in beta-strand region (Munoz and Serrano et al., 1994) |
433 |
MUNV940105 | Free energy in beta-strand region (Munoz and Serrano et al., 1994) |
434 |
WIMW960101 | Free energies of transfer of AcWl-X-LL peptides from bilayer interface to |