CRASP |
Integral characteristic calculation results |
Comments: The main calculation parameters are given below. MULTIPLE ALIGNMENT OF "HMEN_DROME_455 " AND HOMOLOGOUS SEQUENCES. NUMBER OF SEQUENCES: 372. ALIGNMENT LENGTH: 74. AMINO ACID PHYSICO-CHEMICAL CHARACTERISTICS: Isoelectric point (Zimmerman et al., 1968). REFERENCE: J. Theor. Biol. (1968) v.21, p.170-201. WEIGHTS: according to Felsenstein(1985),Am.Nat.,125,1-15. Comments: The variances and means for the integral characteristics are given below. Mean(M) and variance(V): 1: QH1 21.68394 40.56061 2: QH2 26.49128 57.51518 3: QH1+QH2 48.17522 80.70230 4: QH1-QH2 -4.80733 115.44930 Comments: This warning message is shown if Felsenstein(1985) weighting is used. ! WARNING: ! All graphs corresponding to original sample data represent ! contrasts calculated according to Felsenstein(1985),Am.Nat.,125,1-15.
============== F(i) values distribution in original sample =============== ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Comments: Below are given the histograms for the integral characteristic values in the original sample. The alignment parameters (sequence number and length), type of physicochemical property, means and the variability in the given characteristic are given in the legend to each histogram. =================== F(i,j) values pairwise scatterplots =================== ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Comments: Below is given a pairwise scatterplot for the mutuual distributuon of an integral characteristic pair in the aligned sequences. The alignment parameters (sequence number and length), type of physicochemical property, means, the linear correlation coefficient, parameters of the linear regression, 95% confidence intervals for the regression coefficients are given in the legend to each histogram. ========== F(i) dispersion values distribution in random samples ========== ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Comments: Below are given the histograms for the distribution of the sample variations in integral characteristics in a set of randomized samples with no dependence among substitutions. The legend to each histogram indicates the number of random samples, variation value in a real sample, variation value expected in the absense of co-ordinated substitutions, the mean and mean square deviation of the characteristic variance in randomized samples, the proportion of randomized samples with Drand>Dorig. Red arrow variation value in a real sample. ========== (Dexp/D)=Lambda(i) dispersion ratio values distribution in random samples ========== ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Comments: Histograms for variations in the D_rand/D_orig ratio lambda in a set of randomised samples with no dependence among substitutions. The legend to each histogram indicates the number of random samples, variation value in a real sample, variation value expected in the absense of co-ordinated substitutions, the mean and mean square deviation of the lambda variance in randomized samples, the proportion of randomized samples with lambda_rand>lambda_orig. Red arrow points to the D_rand/D_orig value in a real sample.