ddG-Matrix: Plant Ethylene-Responsive protein factor binds GCC-box

Input DNA Sequence :
from Screen:

from DB: Bases Available:
from File: File formats here.

Select one of 6 Plant GCC-box recognition model listed below:


(A) five prediction procedures optimized over the point mutation ddG magnitudes:

Plant GCC-box: Low ddG increases with Major Groove Inflexibility
Plant GCC-box: High ddG increases with Propeller
Plant GCC-box: Point mutation ddG via Major Groove Inflexibility and Propeller
Plant GCC-box: Additive ddG-matrix Score
Plant GCC-box: Multiple mutation ddG via Point mutation ddG

(B) One more prediction procedure adapted to the plant GCC-box system:

Plant GCC-box: Natural Plant GCC-box recognition by Multiple mutation ddG adapted to TRRD database

The Institute of Cytology and Genetics (Russia)

This resource has been developed in collaboration between
The Institute of Cytology and Genetics (Novosibirsk, Russia) and The Institute of Physical and Chemical Research, RIKEN (Thukuba, Japan)
that was supported by RFBR grant #98-07-90126 (Russia) and STA Fellow #499042 (Japan)

Author: Misha Ponomarenko, Ph.D.

Contributors: Julia Ponomarenko, Ms.D. Galina Orlova, Ph.D. Sergey Lavrushev, Ms.D. Anatoly Frolov, Ph.D.

Supervisors: Nikolay Kolchanov, Prof. and Akinori Sarai, Prof.