SELEX_DB: Synthetic oligoDNA's binding the transcription factor CREB

Input DNA Sequence :
from Screen:

from DB: Bases Available:
from File: File formats here.

Select one of 22 CREB-related DNA site recognition model listed below:

(A) Sixteen CREB binding site recognitions optimized over the CREB SELEXed data:

CREB: Frequency matrix for Homology Score
CREB: Frequency matrix for Information content
CREB: Frequency matrix for Matrix similarity
CREB: Frequency matrix for Sensibility score
CREB: Frequency matrix for Fisher's Linear Discriminant
CREB: Frequency matrix for Free energy change
CREB: Frequency matrix for Chance amount
CREB: Consensus with Homology Score
CREB: Consensus with Information content
CREB: Consensus with Matrix similarity
CREB: Consensus with Sensibility score
CREB: Consensus with Fisher's Linear Discriminant
CREB: Consensus with Free energy change
CREB: Consensus with Chance amount
CREB: Mean Recognition Score
CREB: Mean Recognition Score with Diffution Additive

(B) Six additional TF-site recognition procedutes adapted to the others CREB-related Natural and SELEXed data:

CREB: Natural sites CREB (CRE-like)
CREB: Natural sites CRE-BP1 (CRE-like)
CREB: Natural sites ATF (CRE-like)
CREB: OligoDNA's SELEXed by Tax-CREB complex (CRE-like)
CREB: Downstream DNA's region SELEXed by hXBP1 protein (CRE-like)
CREB: Upstream DNA's region SELEXed by hXBP1 protein (CRE-like)

The Institute of Cytology and Genetics (Russia)

This resource has been developed in collaboration between
The Institute of Cytology and Genetics (Novosibirsk, Russia) and The Institute of Physical and Chemical Research, RIKEN (Thukuba, Japan)
that was supported by RFBR grant #98-07-90126 (Russia) and STA Fellow #499042 (Japan)

Author: Julia Ponomarenko, Galine Orlova, Sergey Lavrushev, Svetlana Zybova,
 Misha Ponomarenko, Anatoly Frolov,

Supervisors: Nikolay Kolchanov, Prof. and Akinori Sarai, Prof.