SELEX_DB: Synthetic oligoDNA's binding the transcription factor Maf

Input DNA Sequence :
from Screen:

from DB: Bases Available:
from File: File formats here.

Select one of 20 Maf-related DNA site recognition model listed below:

(A) Sixteen Maf-binding site recognitions optimized over the Maf SELEXed data:

Maf: Frequency matrix for Homology Score
Maf: Frequency matrix for Information content
Maf: Frequency matrix for Matrix similarity
Maf: Frequency matrix for Sensibility score
Maf: Frequency matrix for Fisher's Linear Discriminant
Maf: Frequency matrix for Free energy change
Maf: Frequency matrix for Chance amount
Maf: Consensus with Homology Score
Maf: Consensus with Information content
Maf: Consensus with Matrix similarity
Maf: Consensus with Sensibility score
Maf: Consensus with Fisher's Linear Discriminant
Maf: Consensus with Free energy change
Maf: Consensus with Chance amount
Maf: Mean Recognition Score
Maf: Mean Recognition Score with Diffution Additive

(B) Four additional TF-site recognition procedutes adapted to the others AP-1 related Natural and SELEXed data:

Maf: Natural sites c-Jun (AP-1 like site)
Maf: Natural sites AP-1 (AP-1 like site)
Maf: Natural sites binding the c-Fos containing complexes(AP-1 like site)
Maf: OligoDNA's SELEXed by v-Jun protein (AP-1 like site)

The Institute of Cytology and Genetics (Russia)

This resource has been developed in collaboration between
The Institute of Cytology and Genetics (Novosibirsk, Russia) and The Institute of Physical and Chemical Research, RIKEN (Thukuba, Japan)
that was supported by RFBR grant #98-07-90126 (Russia) and STA Fellow #499042 (Japan)

Author: Julia Ponomarenko, Galine Orlova, Sergey Lavrushev, Svetlana Zybova,
 Misha Ponomarenko, Anatoly Frolov,

Supervisors: Nikolay Kolchanov, Prof. and Akinori Sarai, Prof.