SELEX_DB: Synthetic oligoDNA's binding Max-Max homodimer (E-box like)

Input DNA Sequence :
from Screen:

from DB: Bases Available:
from File: File formats here.

Select one of 20 Max-Max-homodimer related site recognition model listed below (E-box like):

(A) Sixteen Max-Max-homodimer binding site recognition optimized over the Max-Max-homodimer SELEXed data:

Max-Max(E-box like): Frequency matrix for Homology Score
Max-Max(E-box like): Frequency matrix for Information content
Max-Max(E-box like): Frequency matrix for Matrix similarity
Max-Max(E-box like): Frequency matrix for Sensibility score
Max-Max(E-box like): Frequency matrix for Fisher's Linear Discriminant
Max-Max(E-box like): Frequency matrix for Free energy change
Max-Max(E-box like): Frequency matrix for Chance amount
Max-Max(E-box like): Consensus with Homology Score
Max-Max(E-box like): Consensus with Information content
Max-Max(E-box like): Consensus with Matrix similarity
Max-Max(E-box like): Consensus with Sensibility score
Max-Max(E-box like): Consensus with Fisher's Linear Discriminant
Max-Max(E-box like): Consensus with Free energy change
Max-Max(E-box like): Consensus with Chance amount
Max-Max(E-box like): Mean Recognition Score
Max-Max(E-box like): Mean Recognition Score with Diffusion Additive

(B) Four additional TF-site recognition procedutes adapted to the others E-box-like Natural and SELEXed data:

Max-Max(E-box like): Natural sites USF (E-box like)
Max-Max(E-box like): OligoDNA's SELEXed for binding the ADD1-SREBP1 complex (E-box like)
Max-Max(E-box like): OligoDNA's SELEXed for binding the cMyc-Max heterodimer (E-box like)
Max-Max(E-box like): OligoDNA's SELEXed for binding the N-Myc protein (E-box like)

The Institute of Cytology and Genetics (Russia)

This resource has been developed in collaboration between
The Institute of Cytology and Genetics (Novosibirsk, Russia) and The Institute of Physical and Chemical Research, RIKEN (Thukuba, Japan)
that was supported by RFBR grant #98-07-90126 (Russia) and STA Fellow #499042 (Japan)

Author: Julia Ponomarenko, Galine Orlova, Sergey Lavrushev, Svetlana Zybova,
 Misha Ponomarenko, Anatoly Frolov,

Supervisors: Nikolay Kolchanov, Prof. and Akinori Sarai, Prof.