SELEX_DB: OligoDNA binding the Petunia hybrida Myb.Ph3-protein, Myb-homolog (core: TAACnG)

Input DNA Sequence :
from Screen:

from DB: Bases Available:
from File: File formats here.

Select one of 25 Myb.Ph3(core:TAACnG)-related site recognition model listed below:

(A) Fifteen Myb.Ph3(core:TAACnG)-binding site recognitions optimized over the Myb.ph3 SELEXed data (Myb-homolog):

Myb.Ph3(TAACnG): Frequency matrix for Homology Score
Myb.Ph3(TAACnG): Frequency matrix for Information content
Myb.Ph3(TAACnG): Frequency matrix for Matrix similarity
Myb.Ph3(TAACnG): Frequency matrix for Sensibility score
Myb.Ph3(TAACnG): Frequency matrix for Fisher's Linear Discriminant
Myb.Ph3(TAACnG): Frequency matrix for Free energy change
Myb.Ph3(TAACnG): Frequency matrix for Chance amount
Myb.Ph3(TAACnG): Consensus with Homology Score
Myb.Ph3(TAACnG): Consensus with Information content
Myb.Ph3(TAACnG): Consensus with Matrix similarity
Myb.Ph3(TAACnG): Consensus with Sensibility score
Myb.Ph3(TAACnG): Consensus with Fisher's Linear Discriminant
Myb.Ph3(TAACnG): Consensus with Free energy change
Myb.Ph3(TAACnG): Consensus with Chance amount
Myb.Ph3(TAACnG): Mean Recognition Score

(B) Ten additional TF-site recognition procedutes adapted to the others Myb-related Natural and SELEXed data:

Myb.Ph3(TAACnG): Natural sites c-Myb
Myb.Ph3(TAACnG): OligoDNA's SELEXed by c-Myb protein (Howe,1991)
Myb.Ph3(TAACnG): OligoDNA's SELEXed by c-Myb protein (Weston,1998)
Myb.Ph3(TAACnG): OligoDNA's SELEXed by v-Myb protein, viral (Howe,1991)
Myb.Ph3(TAACnG): OligoDNA's SELEXed by v-Myb protein, viral (Weston et al,1998)
Myb.Ph3(TAACnG): Plasmidic DNA's selected by v-Myb protein, viral
Myb.Ph3(TAACnG): OligoDNA's SELEXed by Myb.Ph3-protein (Petunia hybrida, core: TAACTAAC)
Myb.Ph3(TAACnG): OligoDNA's SELEXed by XT-Myb protein
Myb.Ph3(TAACnG): OligoDNA's SELEXed by BM2-Myb protein
Myb.Ph3(TAACnG): OligoDNA's SELEXed by Maize P-protein (Myb-homolog)

The Institute of Cytology and Genetics (Russia)

This resource has been developed in collaboration between
The Institute of Cytology and Genetics (Novosibirsk, Russia) and The Institute of Physical and Chemical Research, RIKEN (Thukuba, Japan)
that was supported by RFBR grant #98-07-90126 (Russia) and STA Fellow #499042 (Japan)

Author: Julia Ponomarenko, Galine Orlova, Sergey Lavrushev, Svetlana Zybova,
 Misha Ponomarenko, Anatoly Frolov,

Supervisors: Nikolay Kolchanov, Prof. and Akinori Sarai, Prof.