SELEX_DB: Synthetic oligoDNA's binding the Tax-CREB complex

Input DNA Sequence :
from Screen:

from DB: Bases Available:
from File: File formats here.

Select one of 22 [Tax+CREB]-related DNA site recognition model listed below:

(A) Sixteen [Tax+CREB]-binding site recognitions optimized over the [Tax+CREB] SELEXed data:

Tax-CREB: Frequency matrix for Homology Score
Tax-CREB: Frequency matrix for Information content
Tax-CREB: Frequency matrix for Matrix similarity
Tax-CREB: Frequency matrix for Sensibility score
Tax-CREB: Frequency matrix for Fisher's Linear Discriminant
Tax-CREB: Frequency matrix for Free energy change
Tax-CREB: Frequency matrix for Chance amount
Tax-CREB: Consensus with Homology Score
Tax-CREB: Consensus with Information content
Tax-CREB: Consensus with Matrix similarity
Tax-CREB: Consensus with Sensibility score
Tax-CREB: Consensus with Fisher's Linear Discriminant
Tax-CREB: Consensus with Free energy change
Tax-CREB: Consensus with Chance amount
Tax-CREB: Mean Recognition Score
Tax-CREB: Mean Recognition Score with Diffution Additive

(B) Six additional TF-site recognition procedutes adapted to the others CRE-related Natural and SELEXed data:

Tax-CREB: Natural sites CREB (CRE-like)
Tax-CREB: Natural sites CRE-BP1 (CRE-like)
Tax-CREB: Natural sites ATF (CRE-like)
Tax-CREB: OligoDNA's SELEXed by the CREB-protein (CRE-like)
Tax-CREB: Downstream DNA's region SELEXed by hXBP1 protein (CRE-like)
Tax-CREB: Upstream DNA's region SELEXed by hXBP1 protein (CRE-like)

The Institute of Cytology and Genetics (Russia)

This resource has been developed in collaboration between
The Institute of Cytology and Genetics (Novosibirsk, Russia) and The Institute of Physical and Chemical Research, RIKEN (Thukuba, Japan)
that was supported by RFBR grant #98-07-90126 (Russia) and STA Fellow #499042 (Japan)

Author: Julia Ponomarenko, Galine Orlova, Sergey Lavrushev, Svetlana Zybova,
 Misha Ponomarenko, Anatoly Frolov,

Supervisors: Nikolay Kolchanov, Prof. and Akinori Sarai, Prof.