SELEX_DB: Synthetic oligoDNA's binding the transcription factor XT-Myb (Weston,1992)

Input DNA Sequence :
from Screen:

from DB: Bases Available:
from File: File formats here.

Select one of 26 XT-Myb-related DNA site recognition model listed below:

(A) Sixteen XT-Myb binding site recognitions optimized over the XT-Myb SELEXed data (Weston,1992):

XT-Myb: Frequency matrix for Homology Score
XT-Myb: Frequency matrix for Information content
XT-Myb: Frequency matrix for Matrix similarity
XT-Myb: Frequency matrix for Sensibility score
XT-Myb: Frequency matrix for Fisher's Linear Discriminant
XT-Myb: Frequency matrix for Free energy change
XT-Myb: Frequency matrix for Chance amount
XT-Myb: Consensus with Homology Score
XT-Myb: Consensus with Information content
XT-Myb: Consensus with Matrix similarity
XT-Myb: Consensus with Sensibility score
XT-Myb: Consensus with Fisher's Linear Discriminant
XT-Myb: Consensus with Free energy change
XT-Myb: Consensus with Chance amount
XT-Myb: Mean Recognition Score
XT-Myb: Mean Recognition Score with Diffution Additive

(B) Ten additional TF-site recognition procedutes adapted to the others Myb-related Natural and SELEXed data:

XT-Myb: Natural sites c-Myb
XT-Myb: OligoDNA's SELEXed by c-Myb protein (Howe,1991)
XT-Myb: OligoDNA's SELEXed by c-Myb protein (Weston,1992)
XT-Myb: OligoDNA's SELEXed by v-Myb protein (Howe,1991)
XT-Myb: OligoDNA's SELEXed by v-Myb protein (Weston,1992)
XT-Myb: Plasmidic DNA's selected by v-Myb protein, viral
XT-Myb: OligoDNA's SELEXed by Myb.Ph3-protein (Petunia hybrida, core: TAACnG)
XT-Myb: OligoDNA's SELEXed by Myb.Ph3-protein (Petunia hybrida, core: TAACTAAC)
XT-Myb: OligoDNA's SELEXed by BM2-Myb protein
XT-Myb: OligoDNA's SELEXed by Maize P-protein (Myb-homolog)

The Institute of Cytology and Genetics (Russia)

This resource has been developed in collaboration between
The Institute of Cytology and Genetics (Novosibirsk, Russia) and The Institute of Physical and Chemical Research, RIKEN (Thukuba, Japan)
that was supported by RFBR grant #98-07-90126 (Russia) and STA Fellow #499042 (Japan)

Author: Julia Ponomarenko, Galine Orlova, Sergey Lavrushev, Svetlana Zybova,
 Misha Ponomarenko, Anatoly Frolov,

Supervisors: Nikolay Kolchanov, Prof. and Akinori Sarai, Prof.