This program is designed to predict the potential binding sites of 37
transcription
factors, listed in Table below, in the target DNA sequence.
The current version of the program supposes the length of the target sequence to
be limited by 32000bp.
The prediction of binding sites of each transcription factor is performed
by means of the corresponding << Recognition Group
>>.
All the 37 Recognition Groups are preliminary constructed by << RecGroup >> program.
The binding sites of 36 transcription factors (except for the case of TFIID)
are revealed in both strand orientations.
The transcription binding sites scanned by RecGroupScan program with the
corresponding type I and II errors. For denotation of the sites, see for example [1].
Boulikas, T. (1994). A compilation and classification of DNA-binding sites for protein
transcription factors from vertebrates. Crit. Rev. Euk. Gene Express. 4, 117-321.
Note:
Only well represented sites (the training sample consists of more than 9 actual
binding sites) have been assessed for the type I and II errors. In other cases, the cells
are blank.
No
|
Binding sites
|
Type I error rate, a 1
|
Type II error rate, a 2
|
1)
|
|
0.188
|
0.004303
|
2)
|
|
0.125
|
0.000872
|
3)
|
|
|
|
4)
|
|
0.118
|
0.003092
|
5)
|
|
0.147
|
0.000207
|
6)
|
BPV-E2
|
|
|
7)
|
|
0.060
|
0.023392
|
8)
|
COUP/RAR
|
0.025
|
0.003936
|
9)
|
|
0.045
|
0.001466
|
10)
|
|
|
|
11)
|
|
|
|
12)
|
|
|
|
13)
|
|
|
|
14)
|
|
0.000
|
0.002229
|
15)
|
|
0.127
|
0.000491
|
16)
|
GT-2B
|
|
|
17)
|
GT-2C
|
|
|
18)
|
|
|
|
19)
|
|
|
|
20)
|
|
|
|
21)
|
|
|
|
22)
|
|
0.038
|
0.000620
|
23)
|
|
|
|
24)
|
|
0.138
|
<10-5
|
25)
|
NF-uE1
|
|
|
26)
|
NF-uE3
|
|
|
27)
|
NF-uE4
|
|
|
28)
|
NF-uE5
|
|
|
29)
|
|
0.163
|
0.000505
|
30)
|
|
|
|
31)
|
|
|
|
32)
|
|
0.176
|
0.000522
|
33)
|
|
|
|
34)
|
|
|
|
35)
|
|
0.029
|
0.008347
|
36)
|
|
0.200
|
0.000029
|
37)
|
|
|
|
Algorithm designer >> Yury Kondrahin
Web Master