ID DM1731. DE D.MELANOGASTER RETROTRANSPOSON 1731 SEQUENCE (4648 pos.) NM **** 1.(1) POLIMERASE II SQ tATAaa CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. 1.134 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 952 957 1.13354 0 0: 0 0 TATAAA 2 1467 1472 1.13354 0 0: 0 0 TATAAA AI 00000 2 chain 1 sites find / exp.num. 1.134 interval 3 TD 1 1558 1553 1.13354 0 0: 0 0 TATAAA NM **** 2.(1.1) Inr (ripl.POLIMERASE II) SQ NTCAQTY CC max mismatch : 0 AI 00000 1 chain 9 sites find / exp.num. 4.533 interval 8 TH num begin end exp.num. dist. mismatch site sequence TD 1 160 166 4.53320 0 0: 0 0 ATCAGTT 2 166 172 4.53320 0 0: 0 0 TTCAGTT 3 1445 1451 4.53320 0 0: 0 0 GTCAGTC 4 1506 1512 4.53320 0 0: 0 0 GTCATTC 5 3030 3036 4.53320 0 0: 0 0 CTCATTT 6 3628 3634 4.53320 0 0: 0 0 ATCAGTC 7 4472 4478 4.53320 0 0: 0 0 ATCAGTT 8 4478 4484 4.53320 0 0: 0 0 TTCAGTT 9 4543 4549 4.53320 0 0: 0 0 CTCATTC AI 00000 2 chain 5 sites find / exp.num. 4.533 interval 8 TD 1 435 429 4.53320 0 0: 0 0 CTCATTC 2 1385 1379 4.53320 0 0: 0 0 ATCAGTC 3 2531 2525 4.53320 0 0: 0 0 ATCAGTT 4 2837 2831 4.53320 0 0: 0 0 CTCATTT 5 4203 4197 4.53320 0 0: 0 0 CTCATTC NM **** 4.(9a) n=55;found upstream from the promoter of the pheasant conalbu- SQ ggaaa CC max mismatch : 0 AI 00000 1 chain 10 sites find / exp.num. 4.535 interval 8 TH num begin end exp.num. dist. mismatch site sequence TD 1 678 682 4.53516 0 0: 0 0 GGAAA 2 802 806 4.53516 0 0: 0 0 GGAAA 3 829 833 4.53516 0 0: 0 0 GGAAA 4 1092 1096 4.53516 0 0: 0 0 GGAAA 5 1332 1336 4.53516 0 0: 0 0 GGAAA 6 1570 1574 4.53516 0 0: 0 0 GGAAA 7 2274 2278 4.53516 0 0: 0 0 GGAAA 8 2367 2371 4.53516 0 0: 0 0 GGAAA 9 2496 2500 4.53516 0 0: 0 0 GGAAA 10 4240 4244 4.53516 0 0: 0 0 GGAAA AI 00000 2 chain 5 sites find / exp.num. 4.535 interval 8 TD 1 49 45 4.53516 0 0: 0 0 GGAAA 2 1765 1761 4.53516 0 0: 0 0 GGAAA 3 2521 2517 4.53516 0 0: 0 0 GGAAA 4 3894 3890 4.53516 0 0: 0 0 GGAAA 5 4361 4357 4.53516 0 0: 0 0 GGAAA NM **** 6.(5) POLY A SINGLE BLOCK SQ AATAAA CC max mismatch : 0 AI 00000 1 chain 3 sites find / exp.num. 1.134 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 176 181 1.13354 0 0: 0 0 AATAAA 2 326 331 1.13354 0 0: 0 0 AATAAA 3 4488 4493 1.13354 0 0: 0 0 AATAAA AI 00000 2 chain 2 sites find / exp.num. 1.134 interval 3 TD 1 221 216 1.13354 0 0: 0 0 AATAAA 2 4533 4528 1.13354 0 0: 0 0 AATAAA NM **** 8.(14b) One of two related variants of a presumed transcription termi SQ tatgt CC max mismatch : 0 AI 00000 1 chain 15 sites find / exp.num. 4.535 interval 8 TH num begin end exp.num. dist. mismatch site sequence TD 1 59 63 4.53516 0 0: 0 0 TATGT 2 102 106 4.53516 0 0: 0 0 TATGT 3 106 110 4.53516 0 0: 0 0 TATGT 4 153 157 4.53516 0 0: 0 0 TATGT 5 644 648 4.53516 0 0: 0 0 TATGT 6 948 952 4.53516 0 0: 0 0 TATGT 7 1387 1391 4.53516 0 0: 0 0 TATGT 8 1442 1446 4.53516 0 0: 0 0 TATGT 9 1559 1563 4.53516 0 0: 0 0 TATGT 10 3333 3337 4.53516 0 0: 0 0 TATGT 11 3882 3886 4.53516 0 0: 0 0 TATGT 12 4371 4375 4.53516 0 0: 0 0 TATGT 13 4414 4418 4.53516 0 0: 0 0 TATGT 14 4418 4422 4.53516 0 0: 0 0 TATGT 15 4465 4469 4.53516 0 0: 0 0 TATGT AI 00000 2 chain 9 sites find / exp.num. 4.535 interval 8 TD 1 82 78 4.53516 0 0: 0 0 TATGT 2 86 82 4.53516 0 0: 0 0 TATGT 3 90 86 4.53516 0 0: 0 0 TATGT 4 788 784 4.53516 0 0: 0 0 TATGT 5 1046 1042 4.53516 0 0: 0 0 TATGT 6 1578 1574 4.53516 0 0: 0 0 TATGT 7 4394 4390 4.53516 0 0: 0 0 TATGT 8 4398 4394 4.53516 0 0: 0 0 TATGT 9 4402 4398 4.53516 0 0: 0 0 TATGT NM **** 9.(9) PRIMER REVERSE TRANSCRIPTION SQ TGGngzntygncygggax AI 00000 2 chain 1 sites find / exp.num. .260 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 3431 3414 .25954 0 3: 3 0 TGGACCCTTGTCCGTGCA NM **** 12.(15) HSV ORI SQ atatatatat CC max mismatch : 1 AI 00000 1 chain 5 sites find / exp.num. .137 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 107 116 .13715 0 1: 1 0 ATGTATATAT 2 109 118 .13715 0 1: 1 0 GTATATATAT 3 1552 1561 .13715 0 1: 1 0 ATTTATATAT 4 4419 4428 .13715 0 1: 1 0 ATGTATATAT 5 4421 4430 .13715 0 1: 1 0 GTATATATAT AI 00000 2 chain 5 sites find / exp.num. .137 interval 1 TD 1 116 107 .13715 0 1: 1 0 ATATATACAT 2 118 109 .13715 0 1: 1 0 ATATATATAC 3 1561 1552 .13715 0 1: 1 0 ATATATAAAT 4 4428 4419 .13715 0 1: 1 0 ATATATACAT 5 4430 4421 .13715 0 1: 1 0 ATATATATAC NM **** 13.(19) ARS Y XE DM SQ xtttatrtttx CC max mismatch : 1 AI 00000 1 chain 2 sites find / exp.num. .248 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 150 160 .24770 0 1: 1 0 TTTTATGTGTA 2 4462 4472 .24770 0 1: 1 0 TTTTATGTGTA NM **** 14.(24) ARS yeast, xenopus SQ xttttatrtttx CC max mismatch : 1 AI 00000 1 chain 2 sites find / exp.num. .069 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 149 160 .06854 0 1: 1 0 TTTTTATGTGTA 2 4461 4472 .06854 0 1: 1 0 TTTTTATGTGTA NM **** 15.(22) SAR A BOX OF DROSOFILA j mol biol v198 n 4 p677 &cell v46 n4 SQ aataaayaaa CC max mismatch : 1 AI 00000 1 chain 2 sites find / exp.num. .257 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 326 335 .25660 0 1: 1 0 AATAAACAAC 2 1159 1168 .25660 0 1: 1 0 AGTAAACAAA AI 00000 2 chain 1 sites find / exp.num. .257 interval 1 TD 1 1908 1899 .25660 0 1: 1 0 AATATACAAA NM **** 54(2). POLIMERASE II -80 SQ yrrrccjcaccctg CC 00000 2 chain 2 sites find / exp.num. .398 interval 2 AI num begin end exp.num. dist. mismatch site sequence TH 1 2884 2871 .39838 0 2: 2 0 CAAGCCACACACCG TD 2 3033 3020 .39838 0 2: 2 0 TGAGCCTCACACTC NM **** 60(11). INTRON-EXON JUNCTION SQ yyyyynyAGG AI 00000 2 chain 4 sites find / exp.num. 1.133 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 375 366 1.13257 0 0: 0 0 CTCCTTTAGG 2 1661 1652 1.13257 0 0: 0 0 CTCCTGTAGG 3 2265 2256 1.13257 0 0: 0 0 CTTCCATAGG 4 2761 2752 1.13257 0 0: 0 0 TCCTCATAGG NM **** 61(12). lar+3' SQ YTaAT-yyyyaG AI 00000 2 chain 1 sites find / exp.num. .739 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 4151 4117 .73892 24 0: 0 0 CTAATgatatcgaatgtcgatgtgcttcgTCCTAG NM **** 64(17). ORI MT !!! SQ trtgytytr AI 00000 2 chain 1 sites find / exp.num. .283 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1237 1229 .28320 0 0: 0 0 TGTGTTTTG NM **** 67(26).ARS-fragment of chlamydomonada SQ raattttaaat CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .071 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 4262 4272 .07077 0 1: 1 0 AAATGTTAAAT NM **** 68(27).ARS of chloroplasts SQ anrtnaccaagt CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .256 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 2740 2751 .25649 0 1: 1 0 AAATTCCCAAGT AI 00000 2 chain 1 sites find / exp.num. .256 interval 1 TD 1 648 637 .00884 0 0: 0 0 ACATAACCAAGT NM **** 71(31).sequence repeated nontandemly several times in the origin of t SQ gcctc AI 00000 2 chain 8 sites find / exp.num. 4.535 interval 8 TH num begin end exp.num. dist. mismatch site sequence TD 1 675 671 4.53516 0 0: 0 0 GCCTC 2 2179 2175 4.53516 0 0: 0 0 GCCTC 3 2194 2190 4.53516 0 0: 0 0 GCCTC 4 2623 2619 4.53516 0 0: 0 0 GCCTC 5 2764 2760 4.53516 0 0: 0 0 GCCTC 6 2800 2796 4.53516 0 0: 0 0 GCCTC 7 3030 3026 4.53516 0 0: 0 0 GCCTC 8 3851 3847 4.53516 0 0: 0 0 GCCTC NM **** 72(33).consensus sequence of the cores of autonomously replicating SQ xaaayataaax AI 00000 2 chain 2 sites find / exp.num. .248 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 160 150 .24770 0 1: 1 0 TACACATAAAA 2 4472 4462 .24770 0 1: 1 0 TACACATAAAA NM **** 75(3a).Promotor of RNA polymerase 1 (human) SQ atcttt-ttttgg CC distance between two blocks of site: min = 18 max = 22 CC max mismatch in 1-st block: 1, in 2-nd block: 1 AI 00000 1 chain 1 sites find / exp.num. .497 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 1560 1591 .49673 20 2: 1 1 ATGTTTcaagggaaacataacagttgTTTTGC AI 00000 2 chain 1 sites find / exp.num. .497 interval 2 TD 1 2281 2248 .49673 22 2: 1 1 ATTTTTccggtccactcttccataggggTTTTGC NM **** 81(12a).consensus sequence near the 3'-ends of the adenovirus 2 genes SQ gggttttg AI 00000 2 chain 1 sites find / exp.num. .071 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 2256 2249 .07082 0 0: 0 0 GGGTTTTG NM **** 82(13a).consensus sequence near the 3'-ends of the adenovirus 2 genes SQ ttgggg CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. 1.134 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 3842 3847 1.13354 0 0: 0 0 TTGGGG AI 00000 2 chain 2 sites find / exp.num. 1.134 interval 3 TD 1 2096 2091 1.13354 0 0: 0 0 TTGGGG 2 3140 3135 1.13354 0 0: 0 0 TTGGGG NM **** 85(16a).one of two suggested consensus sequences for RNA-polymerase I SQ ggttgg AI 00000 2 chain 1 sites find / exp.num. 1.134 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 2124 2119 1.13354 0 0: 0 0 GGTTGG NM **** 89(20a).one of two suggested consensus sequences for RNA-polymerase I SQ tggcnnagtgg CC max mismatch : 1 AI 00000 1 chain 3 sites find / exp.num. .495 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 2260 2270 .49539 0 1: 1 0 TGGAAGAGTGG 2 3694 3704 .49539 0 1: 1 0 TGGCGAAGTTG 3 3703 3713 .49539 0 1: 1 0 TGGCTCAGAGG NM **** promoters SQ tggctcagttgcttcagg CC max mismatch : 4 AI 00000 1 chain 1 sites find / exp.num. .018 interval 0 TH num begin end exp.num. dist. mismatch site sequence TD 1 3703 3720 .01828 0 4: 4 0 TGGCTCAGAGGAATCAGG NM **** 91(22a).consensus sequence near the 5'-ends of the adenovirus 2 genes SQ gtggynnrgtgg CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .478 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 3693 3704 .47760 0 1: 1 0 GTGGCGAAGTTG NM **** 99(31a).putative regulatory sequence(promoter element) present in SQ gggnggrr CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. 1.133 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 982 989 1.13306 0 0: 0 0 GGGAGGAG NM **** 101(33a)."Goldberg-Hogness box";consensus sequence belonging to eukar SQ tataxax CC max mismatch : 0 AI 00000 1 chain 6 sites find / exp.num. 1.133 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 110 116 1.13330 0 0: 0 0 TATATAT 2 112 118 1.13330 0 0: 0 0 TATATAT 3 1467 1473 1.13330 0 0: 0 0 TATAAAT 4 1555 1561 1.13330 0 0: 0 0 TATATAT 5 4422 4428 1.13330 0 0: 0 0 TATATAT 6 4424 4430 1.13330 0 0: 0 0 TATATAT AI 00000 2 chain 4 sites find / exp.num. 1.133 interval 3 TD 1 117 111 1.13330 0 0: 0 0 TATATAT 2 1558 1552 1.13330 0 0: 0 0 TATAAAT 3 1560 1554 1.13330 0 0: 0 0 TATATAA 4 4429 4423 1.13330 0 0: 0 0 TATATAT NM **** 104(37a).sequence frequently found in the promoter region of histone SQ ccgca CC max mismatch : 0 AI 00000 1 chain 6 sites find / exp.num. 4.535 interval 8 TH num begin end exp.num. dist. mismatch site sequence TD 1 133 137 4.53516 0 0: 0 0 CCGCA 2 2123 2127 4.53516 0 0: 0 0 CCGCA 3 2521 2525 4.53516 0 0: 0 0 CCGCA 4 2541 2545 4.53516 0 0: 0 0 CCGCA 5 3723 3727 4.53516 0 0: 0 0 CCGCA 6 4445 4449 4.53516 0 0: 0 0 CCGCA AI 00000 2 chain 9 sites find / exp.num. 4.535 interval 8 TD 1 668 664 4.53516 0 0: 0 0 CCGCA 2 827 823 4.53516 0 0: 0 0 CCGCA 3 1593 1589 4.53516 0 0: 0 0 CCGCA 4 1825 1821 4.53516 0 0: 0 0 CCGCA 5 1916 1912 4.53516 0 0: 0 0 CCGCA 6 2208 2204 4.53516 0 0: 0 0 CCGCA 7 3524 3520 4.53516 0 0: 0 0 CCGCA 8 3811 3807 4.53516 0 0: 0 0 CCGCA 9 4036 4032 4.53516 0 0: 0 0 CCGCA NM **** 107(42a). POLIII SQ trnnrrngg-gxtcrannc CC distance between two blocks of site: min = 31 max = 41 AI max mismatch in 1-st block: 0, in 2-nd block: 1 TH 00000 1 chain 3 sites find / exp.num. .434 interval 2 TD num begin end exp.num. dist. mismatch site sequence 1 2402 2452 .43383 33 1: 0 1 TGCTAAGGGgtaccgtctgtttgacaaagagaagcggtGATCGAGAA 2 2719 2773 .43383 37 1: 0 1 TGTTGATGGctagcgacgtcgaaattcccaagtcctggaggcCATCAATTC 3 2883 2941 .43383 41 1: 0 1 TGCAAGTGGgtgtattccctgaaacgagacgtctctgaattgagcgCTTCAAGGC NM **** 118(12b).Preferential site of transcription termination in yeast gene SQ caaqctttg AI 00000 2 chain 1 sites find / exp.num. .035 interval 0 TH num begin end exp.num. dist. mismatch site sequence TD 1 2667 2659 .03540 0 0: 0 0 CAATCTTTG NM **** 119(13b).One of two related variants of a presumed transcription term SQ tagtggtggtgggct CC max mismatch : 3 AI 00000 1 chain 1 sites find / exp.num. .057 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 2006 2020 .05730 0 3: 3 0 TAATGGTGGTGAGTT NM **** 123(21b).Signal of formiration 3'-end in mRNA of histone genes SQ caagaaaga CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .496 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 4158 4166 .49561 0 1: 1 0 CATGAAAGA 00000 2 chain 1 sites find / exp.num. .496 interval 2 1 1913 1905 .49561 0 1: 1 0 CAAGAAATA NM **** 125(23b).Consensus mRNA cap site in Drosophila Cell 29,1027 (Gnomic) SQ yatcxgq CC max mismatch : 0 AI 00000 1 chain 3 sites find / exp.num. 2.267 interval 5 TH num begin end exp.num. dist. mismatch site sequence TD 1 159 165 2.26660 0 0: 0 0 TATCAGT 2 3627 3633 2.26660 0 0: 0 0 TATCAGT 3 4471 4477 2.26660 0 0: 0 0 TATCAGT AI 00000 2 chain 3 sites find / exp.num. 2.267 interval 5 TD 1 496 490 2.26660 0 0: 0 0 CATCTGG 2 2532 2526 2.26660 0 0: 0 0 CATCAGT 3 3153 3147 2.26660 0 0: 0 0 CATCTGT NM **** 126(24b)."Cap box";one of a number of homology blocks at the 5'-ends SQ ycattcr CC max mismatch : 0 AI 00000 1 chain 4 sites find / exp.num. 1.133 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 1507 1513 1.13330 0 0: 0 0 TCATTCA 2 1808 1814 1.13330 0 0: 0 0 CCATTCA 3 3494 3500 1.13330 0 0: 0 0 CCATTCG 4 4544 4550 1.13330 0 0: 0 0 TCATTCG AI 00000 2 chain 1 sites find / exp.num. 1.133 interval 3 TD 1 4202 4196 1.13330 0 0: 0 0 TCATTCG NM **** 135(37b).Conservative blocks in selfsplising introns 1 group A: SQ augcuggaaa CC max mismatch : 1 AI 00000 1 chain 2 sites find / exp.num. .137 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1327 1336 .13715 0 1: 1 0 TTGCTGGAAA 2 1734 1743 .13715 0 1: 1 0 ATGCTGGCAA NM **** 137(39b).Conservative blocks in selfsplising introns 1 group box 9L: SQ tcagagactaca CC max mismatch : 2 AI 00000 1 chain 1 sites find / exp.num. .174 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1873 1884 .17440 0 2: 2 0 TCATAGACGACA AI 00000 2 chain 1 sites find / exp.num. .174 interval 1 TD 1 2904 2893 .17440 0 2: 2 0 TCAGGGAATACA NM **** 19(5). SECOND MOTIF OF Ad5 E1a SQ zgcgxaa AI 00000 2 chain 2 sites find / exp.num. 1.133 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 226 220 1.13330 0 0: 0 0 CGCGAAA 2 4538 4532 1.13330 0 0: 0 0 CGCGAAA NM **** 22(18). PNAS v84 n5 p1272 H21.3.5 PROTEIN BINDING SITE IN c-FOS ENHAN SQ cccgtc AI 00000 2 chain 1 sites find / exp.num. 1.134 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 2677 2672 1.13354 0 0: 0 0 CCCGTC NM **** 25(25). LVa MOTIF MoMuLV ENHANCER (Mol Cell Biol v7 n3 p1101) SQ gaacag CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. 1.134 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 1363 1368 1.13354 0 0: 0 0 GAACAG NM **** 26(27). LVc MOTIF MoMuLV ENHANCER (Mol Cell Biol v7 n3 p1101) SQ cctgc AI 00000 2 chain 3 sites find / exp.num. 4.535 interval 8 TH num begin end exp.num. dist. mismatch site sequence TD 1 3014 3010 4.53516 0 0: 0 0 CCTGC 2 3574 3570 4.53516 0 0: 0 0 CCTGC 3 3622 3618 4.53516 0 0: 0 0 CCTGC NM **** 27(33). LYSOZYME SILENCER 4 (EMBO j v6 n8 p2298) SQ atnnAgtaaaa AI 00000 2 chain 1 sites find / exp.num. .442 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 1299 1289 .44231 0 1: 1 0 ACTCAGTAAAA NM **** 29(42).Enchanser region of virus PV SQ gctgtgqttttgca AI 00000 2 chain 1 sites find / exp.num. .318 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1239 1226 .31791 0 3: 3 0 ACTGTGTTTTGCCA NM **** 31(48).Enchanser region of virus LPV SQ aagtctgcanagtctgca CC max mismatch : 5 AI 00000 1 chain 1 sites find / exp.num. .463 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 2778 2795 .46259 0 5: 5 0 TATTCTGCAAAGTGGGAA NM **** 34(60).potential core sequence of enhancers of various human viruses SQ cxxxccac CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .567 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 4640 4647 .56653 0 0: 0 0 CAAACCAC NM **** 35(63).enhancer core SV40 SQ tGTGgxxx AI 00000 2 chain 4 sites find / exp.num. .567 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 52 45 .56653 0 0: 0 0 TGTGGAAA 2 2086 2079 .56653 0 0: 0 0 TGTGGAAT 3 4364 4357 .56653 0 0: 0 0 TGTGGAAA 4 4648 4641 .56653 0 0: 0 0 TGTGGTTT NM **** 145(8). SV40 ENHANCER CORE SQ tgtggxxxg AI 00000 2 chain 1 sites find / exp.num. .142 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 4648 4640 .14160 0 0: 0 0 TGTGGTTTG NM **** 157(24). C MOTIF Ig ENHANCER SQ aAAACCACC AI 00000 2 chain 2 sites find / exp.num. .071 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 537 529 .07080 0 1: 1 0 GAAACCACC 2 1225 1217 .01770 0 0: 0 0 AAAACCACC NM **** 163(32). LYSOZYME SILENCER 3 (EMBO J v6 n8 p2298) SQ ancaaTgGct CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .389 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 2135 2144 .38932 0 1: 1 0 AGAAATGGCT NM **** 170(41).Block C of enchanser of virus SV40 SQ tgtggaaagtcccca AI 00000 2 chain 2 sites find / exp.num. .057 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 52 38 .05730 0 3: 3 0 TGTGGAAATTGCCTA 2 4364 4350 .05730 0 3: 3 0 TGTGGAAATTGCCTA NM **** 171(44).Enchanser region of virus BPV SQ catgtggaccctgc CC max mismatch : 3 AI 00000 1 chain 1 sites find / exp.num. .185 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 2640 2653 .18458 0 3: 3 0 CATGTGGGGCCTGG AI 00000 2 chain 4 sites find / exp.num. .185 interval 1 TD 1 26 13 .18458 0 3: 3 0 CATGTGGGCATTGC 2 54 41 .18458 0 3: 3 0 CATGTGGAAATTGC 3 4338 4325 .18458 0 3: 3 0 CATGTGGGCATTGC 4 4366 4353 .18458 0 3: 3 0 CATGTGGAAATTGC NM **** 172(45).Consensus cor sequence of enhancers of adenoviruses; mon SQ mggaagtgam AI 00000 2 chain 1 sites find / exp.num. .478 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 1850 1841 .47780 0 1: 1 0 AGCAAGTGAC NM **** 175(49).Element of enchanser of virus BKV SQ gagtatgca CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .496 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 1717 1725 .49561 0 1: 1 0 CAGTATGCA NM **** 177(51).Conservative elements of Ig enchanser(E1,E2,E3,E4,OCTA) SQ tcaagatggc CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .137 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 417 426 .13715 0 1: 1 0 TCAAGATTGC NM **** 186(64).Direct repeat in mielin proteolipid genes SQ gggaggagrrg CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .133 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 982 992 .13269 0 1: 1 0 GGGAGGAGCGG NM **** 39(26). NFY SQ ccaat AI 00000 2 chain 7 sites find / exp.num. 4.535 interval 8 TH num begin end exp.num. dist. mismatch site sequence TD 1 605 601 4.53516 0 0: 0 0 CCAAT 2 837 833 4.53516 0 0: 0 0 CCAAT 3 2331 2327 4.53516 0 0: 0 0 CCAAT 4 2389 2385 4.53516 0 0: 0 0 CCAAT 5 3045 3041 4.53516 0 0: 0 0 CCAAT 6 3643 3639 4.53516 0 0: 0 0 CCAAT 7 3845 3841 4.53516 0 0: 0 0 CCAAT NM **** 40(2). CRF FACTOR(CCAAT-BOX BINDING FACTOR) SQ tnnnCCatnnC CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. 1.132 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 3278 3288 1.13232 0 0: 0 0 TGAACCATGTC AI 00000 2 chain 1 sites find / exp.num. 1.132 interval 3 TD 1 3382 3372 1.13232 0 0: 0 0 TCCTCCATATC NM **** 187(2.) CRF FACTOR(CCAAT-BOX BINDING FACTOR) SQ tnnnCCatnnC CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. 1.132 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 3278 3288 1.13232 0 0: 0 0 TGAACCATGTC AI 00000 2 chain 1 sites find / exp.num. 1.132 interval 3 TD 1 3382 3372 1.13232 0 0: 0 0 TCCTCCATATC NM **** 190(5). ADENOVIRUS EPF FACtOR SQ atgacgt AI 00000 2 chain 1 sites find / exp.num. .283 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1510 1504 .28333 0 0: 0 0 ATGACGT NM **** 192(7). LARGE T PROTEIN OF PAPILLOMA VIRUS SQ xgrggc CC max mismatch : 0 AI 00000 1 chain 7 sites find / exp.num. 4.534 interval 8 TH num begin end exp.num. dist. mismatch site sequence TD 1 670 675 4.53418 0 0: 0 0 TGAGGC 2 2174 2179 4.53418 0 0: 0 0 TGAGGC 3 2189 2194 4.53418 0 0: 0 0 TGAGGC 4 2618 2623 4.53418 0 0: 0 0 TGAGGC 5 2644 2649 4.53418 0 0: 0 0 TGGGGC 6 2795 2800 4.53418 0 0: 0 0 AGAGGC 7 3025 3030 4.53418 0 0: 0 0 TGAGGC AI 00000 2 chain 1 sites find / exp.num. 4.534 interval 8 TD 1 3139 3134 4.53418 0 0: 0 0 TGGGGC NM **** 193(8). RPG FACTOR SQ tgg-cca CC distance between two blocks of site: min = 7 max = 7 CC max mismatch in 1-st block: 0, in 2-nd block: 0 AI 00000 1 chain 2 sites find / exp.num. 1.132 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 1738 1750 1.13184 7 0: 0 0 TGGcaaaaatCCA 2 1798 1810 1.13184 7 0: 0 0 TGGatatgatCCA AI 00000 2 chain 2 sites find / exp.num. 1.132 interval 3 TD 1 1750 1738 1.13184 7 0: 0 0 TGGatttttgCCA 2 1810 1798 1.13184 7 0: 0 0 TGGatcatatCCA NM **** 204(24).Consensus dc sequence essential for correct transcription of TD tnatttgcat AI 00000 2 chain 1 sites find / exp.num. .495 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 2836 2827 .49550 0 1: 1 0 TCATTTGCAA NM **** 208(29).Consensus sequence of several adenoviral promoters located at SQ gyttagtncgtnarncatgagr CC max mismatch : 4 AI 00000 1 chain 1 sites find / exp.num. .029 interval 0 TH num begin end exp.num. dist. mismatch site sequence TD 1 539 560 .02907 0 4: 4 0 GGAGAGTCCGTGAAACCTGAGG NM **** 41(5). HEAt-SHOSK RESPONSIVE ELEMENT SQ ttcnngaa CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. 1.133 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 890 897 1.13306 0 0: 0 0 TTCGAGAA 2 1510 1517 1.13306 0 0: 0 0 TTCAGGAA AI 00000 2 chain 2 sites find / exp.num. 1.133 interval 3 TD 1 897 890 1.13306 0 0: 0 0 TTCTCGAA 2 1517 1510 1.13306 0 0: 0 0 TTCCTGAA NM **** 42(7). heat-shock HSP70 SQ ctcgaatgTTcgcgaaa CC max mismatch : 5 AI 00000 1 chain 1 sites find / exp.num. .230 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 512 528 .23014 0 5: 5 0 CACGCATGTTTGTGGAA NM **** 44(10). HEAVY METALL RESPONSIVE ELEMENT SQ tgCrcyc AI 00000 2 chain 4 sites find / exp.num. 1.133 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 1024 1018 1.13330 0 0: 0 0 TGCGCTC 2 1084 1078 1.13330 0 0: 0 0 TGCGCTC 3 2615 2609 1.13330 0 0: 0 0 TGCACTC 4 3417 3411 1.13330 0 0: 0 0 TGCACTC NM **** 48(33).Consensus sequence of the recognition sites for the glucocorti SQ tgttct CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. 1.134 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 3242 3247 1.13354 0 0: 0 0 TGTTCT 2 3439 3444 1.13354 0 0: 0 0 TGTTCT AI 00000 2 chain 3 sites find / exp.num. 1.134 interval 3 TD 1 80 75 1.13354 0 0: 0 0 TGTTCT 2 1188 1183 1.13354 0 0: 0 0 TGTTCT 3 4392 4387 1.13354 0 0: 0 0 TGTTCT NM **** 50(11). INTERFERONE GAMMA RESPONSIVE ELEMENT SQ agaagnmag CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .142 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 2449 2457 .14160 0 0: 0 0 AGAAGCAAG NM **** 51(1). cAMP-regulated element CREB SQ tgacgtca CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .071 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1502 1509 .07082 0 0: 0 0 TGACGTCA AI 00000 2 chain 1 sites find / exp.num. .071 interval 1 TD 1 1509 1502 .07082 0 0: 0 0 TGACGTCA NM **** 213(2). HEAVI-METALS INDUCTION ELEMENT SQ tgcgcycgg AI 00000 2 chain 1 sites find / exp.num. .035 interval 0 TH num begin end exp.num. dist. mismatch site sequence TD 1 1084 1076 .03540 0 0: 0 0 TGCGCTCGG NM **** 218(16).Consensus binding site of gormone-receptor's complex of gluco SQ zggtxcamnntgtyct AI 00000 2 chain 1 sites find / exp.num. .156 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1687 1672 .15630 0 2: 2 0 CCGTACACCATCTTCT NM **** 224(24).Site of induction J-strand of Ig genes M SQ tcatttgcac AI 00000 2 chain 1 sites find / exp.num. .137 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 2836 2827 .13715 0 1: 1 0 TCATTTGCAA NM **** 228(29).Element of promotor of interferone GAMMA SQ aagtgtaat-gagtnnnct AI 00000 2 chain 2 sites find / exp.num. .115 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1328 1304 .11524 7 3: 2 1 AAGACTAATtttttcaGTGTGCTCT 2 1328 1306 .11524 5 3: 2 1 AAGACTAATtttttCAGTGTGCT NM **** 230(31).Consensus sequense of several binding sites of the glucocorti SQ gnnacaanntgtyct CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .071 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 2450 2464 .07071 0 1: 1 0 GAAGCAAGATGTCCT NM **** 233(2). MUSCUL-SPECIFIC FACTOR SQ axxtatncat AI 00000 2 chain 2 sites find / exp.num. .071 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 116 107 .07079 0 0: 0 0 ATATATACAT 2 4428 4419 .07079 0 0: 0 0 ATATATACAT NM **** 235(4). CCCAC-BOX BINDING FACTOR SQ cccac CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. 4.535 interval 8 TH num begin end exp.num. dist. mismatch site sequence TD 1 19 23 4.53516 0 0: 0 0 CCCAC 2 4331 4335 4.53516 0 0: 0 0 CCCAC AI 00000 2 chain 4 sites find / exp.num. 4.535 interval 8 TD 1 2590 2586 4.53516 0 0: 0 0 CCCAC 2 2647 2643 4.53516 0 0: 0 0 CCCAC 3 2793 2789 4.53516 0 0: 0 0 CCCAC 4 2892 2888 4.53516 0 0: 0 0 CCCAC NM **** 240(9). MHC X-BOX SQ cccaGmraGxgatg AI 00000 2 chain 1 sites find / exp.num. .078 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1853 1840 .07777 0 2: 2 0 TCCAGCAAGTGACG NM **** 242(11). ANTITROMBIN-III ENHANCER SPECIFIC FACTOR SQ gtGGxxxg AI 00000 2 chain 1 sites find / exp.num. .567 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 4647 4640 .56653 0 0: 0 0 GTGGTTTG NM **** 252(21). RIBOSOMAL PROTEIN SPECIFIC MOTIF (JBC v263 n33 p17772) SQ cttccg AI 00000 2 chain 1 sites find / exp.num. 1.134 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 1919 1914 1.13354 0 0: 0 0 CTTCCG NM **** 253(22).cycle histone MCB 85 5 2 380 389 SQ GAYTTC CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. 2.267 interval 5 TH num begin end exp.num. dist. mismatch site sequence TD 1 3395 3400 2.26709 0 0: 0 0 GATTTC AI 00000 2 chain 6 sites find / exp.num. 2.267 interval 5 TD 1 630 625 2.26709 0 0: 0 0 GACTTC 2 808 803 2.26709 0 0: 0 0 GATTTC 3 1931 1926 2.26709 0 0: 0 0 GACTTC 4 2868 2863 2.26709 0 0: 0 0 GATTTC 5 3485 3480 2.26709 0 0: 0 0 GATTTC 6 4158 4153 2.26709 0 0: 0 0 GACTTC NM **** 254(23). cycle cell 86 45 4 537 544 trt1 SQ GCGAAA AI 00000 2 chain 2 sites find / exp.num. 1.134 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 225 220 1.13354 0 0: 0 0 GCGAAA 2 4537 4532 1.13354 0 0: 0 0 GCGAAA NM **** 257(26).Regulated element of gene LSP of D.melanogaster EMBO J (1985) V 4 N P 3789 H SQ aaaytaaagctggt CC max mismatch : 3 AI 00000 1 chain 1 sites find / exp.num. .318 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1537 1550 .31791 0 3: 3 0 TAATGAGAGCTGGT AI 00000 2 chain 2 sites find / exp.num. .318 interval 1 TD 1 173 160 .31791 0 3: 3 0 AAACTGAAACTGAT 2 4485 4472 .31791 0 3: 3 0 AAACTGAAACTGAT NM **** 258(27).Regulating element of promotor of contractive(KONTRAKTILNIY) SQ cattcct AI 00000 2 chain 1 sites find / exp.num. .283 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1632 1626 .28333 0 0: 0 0 CATTCCT NM **** 262(31).Consensus sequence of transcription regulation sites near SQ cytttgcryycg CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .128 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 2995 3006 .12824 0 1: 1 0 CTTTTTCACCCG AI 00000 2 chain 3 sites find / exp.num. .128 interval 1 TD 1 1028 1017 .12824 0 1: 1 0 CCTTTGCGCTCT 2 1088 1077 .12824 0 1: 1 0 TCTTTGCGCTCG 3 2368 2357 .12824 0 1: 1 0 CCTTTGGATTCG NM **** 263(32).Sequence repeated 5 times in the promoter of the mouse SQ gaaga CC max mismatch : 0 AI 00000 1 chain 17 sites find / exp.num. 4.535 interval 8 TH num begin end exp.num. dist. mismatch site sequence TD 1 269 273 4.53516 0 0: 0 0 GAAGA 2 968 972 4.53516 0 0: 0 0 GAAGA 3 1087 1091 4.53516 0 0: 0 0 GAAGA 4 1302 1306 4.53516 0 0: 0 0 GAAGA 5 1376 1380 4.53516 0 0: 0 0 GAAGA 6 1670 1674 4.53516 0 0: 0 0 GAAGA 7 1673 1677 4.53516 0 0: 0 0 GAAGA 8 1766 1770 4.53516 0 0: 0 0 GAAGA 9 1916 1920 4.53516 0 0: 0 0 GAAGA 10 2262 2266 4.53516 0 0: 0 0 GAAGA 11 2625 2629 4.53516 0 0: 0 0 GAAGA 12 2693 2697 4.53516 0 0: 0 0 GAAGA 13 2793 2797 4.53516 0 0: 0 0 GAAGA 14 3369 3373 4.53516 0 0: 0 0 GAAGA 15 4043 4047 4.53516 0 0: 0 0 GAAGA 16 4097 4101 4.53516 0 0: 0 0 GAAGA 17 4581 4585 4.53516 0 0: 0 0 GAAGA AI 00000 2 chain 7 sites find / exp.num. 4.535 interval 8 TD 1 189 185 4.53516 0 0: 0 0 GAAGA 2 284 280 4.53516 0 0: 0 0 GAAGA 3 633 629 4.53516 0 0: 0 0 GAAGA 4 1418 1414 4.53516 0 0: 0 0 GAAGA 5 1934 1930 4.53516 0 0: 0 0 GAAGA 6 4501 4497 4.53516 0 0: 0 0 GAAGA 7 4596 4592 4.53516 0 0: 0 0 GAAGA NM **** 265(34).Consensus sequence of a putative transcription control elemen SQ tcccgcm CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .567 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 2519 2525 .56665 0 0: 0 0 TCCCGCA AI 00000 2 chain 1 sites find / exp.num. .567 interval 2 TD 1 3526 3520 .56665 0 0: 0 0 TCCCGCA NM **** 266(35).Consensus pd sequense essential for correct transcription of SQ tgcazctgtgnccag CC max mismatch : 3 AI 00000 1 chain 1 sites find / exp.num. .318 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 2999 3013 .31785 0 3: 3 0 TTCACCCGTGTGCAG NM **** 268(37).Consensus sequence of repeated hexanucleotides within the 5'- SQ aarqga CC max mismatch : 0 AI 00000 1 chain 9 sites find / exp.num. 4.534 interval 8 TH num begin end exp.num. dist. mismatch site sequence TD 1 369 374 4.53418 0 0: 0 0 AAAGGA 2 1567 1572 4.53418 0 0: 0 0 AAGGGA 3 1624 1629 4.53418 0 0: 0 0 AAAGGA 4 2334 2339 4.53418 0 0: 0 0 AAAGGA 5 2364 2369 4.53418 0 0: 0 0 AAAGGA 6 2369 2374 4.53418 0 0: 0 0 AAAGGA 7 2831 2836 4.53418 0 0: 0 0 AAATGA 8 3110 3115 4.53418 0 0: 0 0 AAAGGA 9 4237 4242 4.53418 0 0: 0 0 AAGGGA AI 00000 2 chain 5 sites find / exp.num. 4.534 interval 8 TD 1 1847 1842 4.53418 0 0: 0 0 AAGTGA 2 1872 1867 4.53418 0 0: 0 0 AAGTGA 3 2466 2461 4.53418 0 0: 0 0 AAAGGA 4 3036 3031 4.53418 0 0: 0 0 AAATGA 5 3489 3484 4.53418 0 0: 0 0 AAGTGA NM **** 271(41).Sequence frequently found in the promoter region of histone H SQ cgcac CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. 4.535 interval 8 TH num begin end exp.num. dist. mismatch site sequence TD 1 2124 2128 4.53516 0 0: 0 0 CGCAC AI 00000 2 chain 4 sites find / exp.num. 4.535 interval 8 TD 1 1824 1820 4.53516 0 0: 0 0 CGCAC 2 3591 3587 4.53516 0 0: 0 0 CGCAC 3 3810 3806 4.53516 0 0: 0 0 CGCAC 4 4083 4079 4.53516 0 0: 0 0 CGCAC