ID DM176. DE D.MELAN. COPIA-LIKE ELEMENT 17.6 Seq(2985 1894 1048 1512 7439pos NM POLIMERASE II SQ tATAaa CC max mismatch : 0 AI 00000 1 chain 8 sites find / exp.num. 1.815 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 841 846 1.81494 0 0: 0 0 TATAAA 2 987 992 1.81494 0 0: 0 0 TATAAA 3 1359 1364 1.81494 0 0: 0 0 TATAAA 4 1619 1624 1.81494 0 0: 0 0 TATAAA 5 4162 4167 1.81494 0 0: 0 0 TATAAA 6 4171 4176 1.81494 0 0: 0 0 TATAAA 7 5417 5422 1.81494 0 0: 0 0 TATAAA 8 6513 6518 1.81494 0 0: 0 0 TATAAA AI 00000 2 chain 2 sites find / exp.num. 1.815 interval 4 TD 1 5750 5745 1.81494 0 0: 0 0 TATAAA 2 6017 6012 1.81494 0 0: 0 0 TATAAA NM Inr (ripl.POLIMERASE II) SQ NTCAQTY CC max mismatch : 0 AI 00000 1 chain 13 sites find / exp.num. 7.259 interval 12 TH num begin end exp.num. dist. mismatch site sequence TD 1 324 330 7.25879 0 0: 0 0 CTCATTT 2 336 342 7.25879 0 0: 0 0 TTCATTT 3 347 353 7.25879 0 0: 0 0 TTCAGTC 4 1732 1738 7.25879 0 0: 0 0 ATCAGTC 5 2739 2745 7.25879 0 0: 0 0 GTCATTT 6 3289 3295 7.25879 0 0: 0 0 ATCAGTT 7 4496 4502 7.25879 0 0: 0 0 GTCATTC 8 5826 5832 7.25879 0 0: 0 0 TTCAGTT 9 6501 6507 7.25879 0 0: 0 0 TTCATTT 10 6771 6777 7.25879 0 0: 0 0 ATCATTT 11 7251 7257 7.25879 0 0: 0 0 CTCATTT 12 7263 7269 7.25879 0 0: 0 0 TTCATTT 13 7274 7280 7.25879 0 0: 0 0 TTCAGTC AI 00000 2 chain 13 sites find / exp.num. 7.259 interval 12 TD 1 2584 2578 7.25879 0 0: 0 0 TTCATTT 2 3163 3157 7.25879 0 0: 0 0 TTCATTT 3 3397 3391 7.25879 0 0: 0 0 ATCATTC 4 3690 3684 7.25879 0 0: 0 0 GTCAGTC 5 4125 4119 7.25879 0 0: 0 0 GTCAGTT 6 4720 4714 7.25879 0 0: 0 0 CTCATTT 7 5407 5401 7.25879 0 0: 0 0 GTCAGTC 8 5676 5670 7.25879 0 0: 0 0 TTCAGTT 9 5762 5756 7.25879 0 0: 0 0 CTCATTT 10 5868 5862 7.25879 0 0: 0 0 ATCATTT 11 5958 5952 7.25879 0 0: 0 0 GTCATTT 12 6539 6533 7.25879 0 0: 0 0 ATCATTT 13 6686 6680 7.25879 0 0: 0 0 ATCATTT NM n=55;found upstream from the promoter of the pheasant conalbu- SQ ggaaa CC max mismatch : 0 AI 00000 1 chain 8 sites find / exp.num. 7.261 interval 12 TH num begin end exp.num. dist. mismatch site sequence TD 1 2375 2379 7.26074 0 0: 0 0 GGAAA 2 3212 3216 7.26074 0 0: 0 0 GGAAA 3 4178 4182 7.26074 0 0: 0 0 GGAAA 4 4414 4418 7.26074 0 0: 0 0 GGAAA 5 5161 5165 7.26074 0 0: 0 0 GGAAA 6 5885 5889 7.26074 0 0: 0 0 GGAAA 7 6054 6058 7.26074 0 0: 0 0 GGAAA 8 6526 6530 7.26074 0 0: 0 0 GGAAA AI 00000 2 chain 6 sites find / exp.num. 7.261 interval 12 TD 1 1770 1766 7.26074 0 0: 0 0 GGAAA 2 1914 1910 7.26074 0 0: 0 0 GGAAA 3 3266 3262 7.26074 0 0: 0 0 GGAAA 4 4682 4678 7.26074 0 0: 0 0 GGAAA 5 4999 4995 7.26074 0 0: 0 0 GGAAA 6 6075 6071 7.26074 0 0: 0 0 GGAAA NM POLY A SINGLE BLOCK SQ AATAAA CC max mismatch : 0 AI 00000 1 chain 34 sites find / exp.num. 1.815 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 167 172 1.81494 0 0: 0 0 AATAAA 2 372 377 1.81494 0 0: 0 0 AATAAA 3 665 670 1.81494 0 0: 0 0 AATAAA 4 848 853 1.81494 0 0: 0 0 AATAAA 5 892 897 1.81494 0 0: 0 0 AATAAA 6 896 901 1.81494 0 0: 0 0 AATAAA 7 942 947 1.81494 0 0: 0 0 AATAAA 8 946 951 1.81494 0 0: 0 0 AATAAA 9 1047 1052 1.81494 0 0: 0 0 AATAAA 10 1051 1056 1.81494 0 0: 0 0 AATAAA 11 1526 1531 1.81494 0 0: 0 0 AATAAA 12 1583 1588 1.81494 0 0: 0 0 AATAAA 13 1655 1660 1.81494 0 0: 0 0 AATAAA 14 2090 2095 1.81494 0 0: 0 0 AATAAA 15 2789 2794 1.81494 0 0: 0 0 AATAAA 16 3601 3606 1.81494 0 0: 0 0 AATAAA 17 3667 3672 1.81494 0 0: 0 0 AATAAA 18 3970 3975 1.81494 0 0: 0 0 AATAAA 19 4213 4218 1.81494 0 0: 0 0 AATAAA 20 4711 4716 1.81494 0 0: 0 0 AATAAA 21 4894 4899 1.81494 0 0: 0 0 AATAAA 22 5284 5289 1.81494 0 0: 0 0 AATAAA 23 5293 5298 1.81494 0 0: 0 0 AATAAA 24 5797 5802 1.81494 0 0: 0 0 AATAAA 25 5949 5954 1.81494 0 0: 0 0 AATAAA 26 6228 6233 1.81494 0 0: 0 0 AATAAA 27 6316 6321 1.81494 0 0: 0 0 AATAAA 28 6337 6342 1.81494 0 0: 0 0 AATAAA 29 6345 6350 1.81494 0 0: 0 0 AATAAA 30 6426 6431 1.81494 0 0: 0 0 AATAAA 31 6519 6524 1.81494 0 0: 0 0 AATAAA 32 6648 6653 1.81494 0 0: 0 0 AATAAA 33 7094 7099 1.81494 0 0: 0 0 AATAAA 34 7299 7304 1.81494 0 0: 0 0 AATAAA AI 00000 2 chain 17 sites find / exp.num. 1.815 interval 4 TD 1 414 409 1.81494 0 0: 0 0 AATAAA 2 492 487 1.81494 0 0: 0 0 AATAAA 3 505 500 1.81494 0 0: 0 0 AATAAA 4 716 711 1.81494 0 0: 0 0 AATAAA 5 1518 1513 1.81494 0 0: 0 0 AATAAA 6 1578 1573 1.81494 0 0: 0 0 AATAAA 7 2202 2197 1.81494 0 0: 0 0 AATAAA 8 2506 2501 1.81494 0 0: 0 0 AATAAA 9 2592 2587 1.81494 0 0: 0 0 AATAAA 10 2625 2620 1.81494 0 0: 0 0 AATAAA 11 3712 3707 1.81494 0 0: 0 0 AATAAA 12 4291 4286 1.81494 0 0: 0 0 AATAAA 13 4871 4866 1.81494 0 0: 0 0 AATAAA 14 6749 6744 1.81494 0 0: 0 0 AATAAA 15 7341 7336 1.81494 0 0: 0 0 AATAAA 16 7419 7414 1.81494 0 0: 0 0 AATAAA 17 7432 7427 1.81494 0 0: 0 0 AATAAA NM One of two related variants of a presumed transcription termi SQ tatgt CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. 7.261 interval 12 TH num begin end exp.num. dist. mismatch site sequence TD 1 2073 2077 7.26074 0 0: 0 0 TATGT AI 00000 2 chain 31 sites find / exp.num. 7.261 interval 12 TD 1 9 5 7.26074 0 0: 0 0 TATGT 2 17 13 7.26074 0 0: 0 0 TATGT 3 29 25 7.26074 0 0: 0 0 TATGT 4 34 30 7.26074 0 0: 0 0 TATGT 5 45 41 7.26074 0 0: 0 0 TATGT 6 296 292 7.26074 0 0: 0 0 TATGT 7 1211 1207 7.26074 0 0: 0 0 TATGT 8 1601 1597 7.26074 0 0: 0 0 TATGT 9 2893 2889 7.26074 0 0: 0 0 TATGT 10 2942 2938 7.26074 0 0: 0 0 TATGT 11 3448 3444 7.26074 0 0: 0 0 TATGT 12 3730 3726 7.26074 0 0: 0 0 TATGT 13 4233 4229 7.26074 0 0: 0 0 TATGT 14 4256 4252 7.26074 0 0: 0 0 TATGT 15 4514 4510 7.26074 0 0: 0 0 TATGT 16 4576 4572 7.26074 0 0: 0 0 TATGT 17 5080 5076 7.26074 0 0: 0 0 TATGT 18 5093 5089 7.26074 0 0: 0 0 TATGT 19 5179 5175 7.26074 0 0: 0 0 TATGT 20 5230 5226 7.26074 0 0: 0 0 TATGT 21 5794 5790 7.26074 0 0: 0 0 TATGT 22 6045 6041 7.26074 0 0: 0 0 TATGT 23 6210 6206 7.26074 0 0: 0 0 TATGT 24 6438 6434 7.26074 0 0: 0 0 TATGT 25 6642 6638 7.26074 0 0: 0 0 TATGT 26 6714 6710 7.26074 0 0: 0 0 TATGT 27 6936 6932 7.26074 0 0: 0 0 TATGT 28 6944 6940 7.26074 0 0: 0 0 TATGT 29 6956 6952 7.26074 0 0: 0 0 TATGT 30 6972 6968 7.26074 0 0: 0 0 TATGT 31 7223 7219 7.26074 0 0: 0 0 TATGT NM ORI HUM SQ taaatttagt CC max mismatch : 1 TD 00000 1 chain 1 sites find / exp.num. .220 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 3703 3712 .21966 0 1: 1 0 TAAATTTATT AI 00000 2 chain 1 sites find / exp.num. .220 interval 1 TD 1 6813 6804 .21966 0 1: 1 0 TAATTTTAGT NM ARS Y XE DM SQ xtttatrtttx CC max mismatch : 1 AI 00000 1 chain 2 sites find / exp.num. .397 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 4324 4334 .39675 0 1: 1 0 AGTTATATTTT 2 6752 6762 .39675 0 1: 1 0 ACTTATATTTA AI 00000 2 chain 13 sites find / exp.num. .397 interval 2 TD 1 847 837 .01417 0 0: 0 0 ATTTATATTTT 2 993 983 .01417 0 0: 0 0 TTTTATATTTT 3 1001 991 .39675 0 1: 1 0 TTTAATATTTT 4 1033 1023 .39675 0 1: 1 0 TTTTTTGTTTT 5 1041 1031 .39675 0 1: 1 0 TTTTTTGTTTT 6 1053 1043 .39675 0 1: 1 0 ATTTATTTTTT 7 2758 2748 .39675 0 1: 1 0 ATTTACATTTT 8 4175 4165 .39675 0 1: 1 0 TTATATATTTT 9 4177 4167 .39675 0 1: 1 0 TTTTATATATT 10 6156 6146 .39675 0 1: 1 0 TTTAATGTTTA 11 6519 6509 .39675 0 1: 1 0 TTTTATATTAT 12 6525 6515 .39675 0 1: 1 0 TTTTATTTTTA 13 6566 6556 .39675 0 1: 1 0 ATTTCTATTTT NM ARS yeast, xenopus SQ xttttatrtttx AI 00000 2 chain 8 sites find / exp.num. .110 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 848 837 .10980 0 1: 1 0 TATTTATATTTT 2 994 983 .00354 0 0: 0 0 TTTTTATATTTT 3 1002 991 .10980 0 1: 1 0 TTTTAATATTTT 4 1034 1023 .10980 0 1: 1 0 TTTTTTTGTTTT 5 1042 1031 .10980 0 1: 1 0 TTTTTTTGTTTT 6 4176 4165 .10980 0 1: 1 0 TTTATATATTTT 7 6157 6146 .10980 0 1: 1 0 TTTTAATGTTTA 8 6520 6509 .10980 0 1: 1 0 TTTTTATATTAT NM SAR A BOX OF DROSOFILA j mol biol v198 n 4 p677 &cell v46 n4 SQ aataaayaaa CC max mismatch : 1 AI 00000 1 chain 29 sites find / exp.num. .411 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 167 176 .01417 0 0: 0 0 AATAAACAAA 2 368 377 .41098 0 1: 1 0 AATCAATAAA 3 372 381 .41098 0 1: 1 0 AATAAACAAC 4 848 857 .41098 0 1: 1 0 AATAAATTAA 5 892 901 .01417 0 0: 0 0 AATAAATAAA 6 896 905 .41098 0 1: 1 0 AATAAATAAG 7 942 951 .01417 0 0: 0 0 AATAAATAAA 8 1021 1030 .41098 0 1: 1 0 AAAAAACAAA 9 1029 1038 .41098 0 1: 1 0 AAAAAACAAA 10 1043 1052 .41098 0 1: 1 0 AAAAAATAAA 11 1047 1056 .01417 0 0: 0 0 AATAAATAAA 12 1051 1060 .41098 0 1: 1 0 AATAAATAAT 13 1522 1531 .41098 0 1: 1 0 AATTAATAAA 14 1583 1592 .41098 0 1: 1 0 AATAAATAAC 15 1651 1660 .41098 0 1: 1 0 AACAAATAAA 16 3663 3672 .41098 0 1: 1 0 AAGAAATAAA 17 4167 4176 .41098 0 1: 1 0 AATATATAAA 18 4533 4542 .41098 0 1: 1 0 AATATACAAA 19 4890 4899 .41098 0 1: 1 0 AAGAAATAAA 20 5284 5293 .01417 0 0: 0 0 AATAAACAAA 21 5293 5302 .41098 0 1: 1 0 AATAAATAAT 22 5945 5954 .41098 0 1: 1 0 AATTAATAAA 23 6228 6237 .41098 0 1: 1 0 AATAAATACA 24 6337 6346 .41098 0 1: 1 0 AATAAAGAAA 25 6341 6350 .41098 0 1: 1 0 AAGAAATAAA 26 6345 6354 .41098 0 1: 1 0 AATAAACAAT 27 7094 7103 .01417 0 0: 0 0 AATAAACAAA 28 7295 7304 .41098 0 1: 1 0 AATCAATAAA 29 7299 7308 .41098 0 1: 1 0 AATAAACAAC NM SAR T BOX OF DROSOFILA cell v46 n4 p521 SQ TtXTxTTXtt CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .057 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 6740 6749 .05669 0 0: 0 0 TTATTTTATT AI 00000 2 chain 25 sites find / exp.num. .057 interval 1 TD 1 834 825 .05669 0 0: 0 0 TTTTTTTTTT 2 835 826 .05669 0 0: 0 0 TTTTTTTTTT 3 836 827 .05669 0 0: 0 0 TTTTTTTTTT 4 837 828 .05669 0 0: 0 0 TTTTTTTTTT 5 838 829 .05669 0 0: 0 0 TTTTTTTTTT 6 839 830 .05669 0 0: 0 0 TTTTTTTTTT 7 840 831 .05669 0 0: 0 0 TTTTTTTTTT 8 845 836 .05669 0 0: 0 0 TTATATTTTT 9 991 982 .05669 0 0: 0 0 TTATATTTTT 10 1020 1011 .05669 0 0: 0 0 TTTTTTTTTT 11 1021 1012 .05669 0 0: 0 0 TTTTTTTTTT 12 1022 1013 .05669 0 0: 0 0 TTTTTTTTTT 13 1023 1014 .05669 0 0: 0 0 TTTTTTTTTT 14 1024 1015 .05669 0 0: 0 0 TTTTTTTTTT 15 1025 1016 .05669 0 0: 0 0 TTTTTTTTTT 16 1026 1017 .05669 0 0: 0 0 TTTTTTTTTT 17 1045 1036 .05669 0 0: 0 0 TTTTTTTTTT 18 1046 1037 .05669 0 0: 0 0 TTTTTTTTTT 19 1047 1038 .05669 0 0: 0 0 TTTTTTTTTT 20 1048 1039 .05669 0 0: 0 0 TTTTTTTTTT 21 1051 1042 .05669 0 0: 0 0 TTATTTTTTT 22 6432 6423 .05669 0 0: 0 0 TTTTATTATT 23 6517 6508 .05669 0 0: 0 0 TTATATTATT 24 6525 6516 .05669 0 0: 0 0 TTTTATTTTT 25 6654 6645 .05669 0 0: 0 0 TTTTATTTTT NM initiation of translation in genes of animals SQ zaannatgg CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. .907 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 1069 1077 .90710 0 0: 0 0 CAAAAATGG 2 3192 3200 .90710 0 0: 0 0 CAAACATGG AI 00000 2 chain 3 sites find / exp.num. .907 interval 3 TD 1 206 198 .90710 0 0: 0 0 CAAGAATGG 2 4449 4441 .90710 0 0: 0 0 CAAAAATGG 3 7133 7125 .90710 0 0: 0 0 CAAGAATGG NM ANIMAL POLIMERASE II SQ ggycaatct-tataxax AI 00000 2 chain 1 sites find / exp.num. .277 interval 0 TH num begin end exp.num. dist. mismatch site sequence TD 1 567 499 .27678 53 2: 1 1 GGCAAATCTggttaccgcatcaaggaactttaacactgatcacatcgactgcgccaattgcaAATAAAT NM INTRON-EXON JUNCTION SQ yyyyynyAGG AI 00000 2 chain 3 sites find / exp.num. 1.814 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 1445 1436 1.81396 0 0: 0 0 TTCTTCCAGG 2 2881 2872 1.81396 0 0: 0 0 TTTCTGCAGG 3 3623 3614 1.81396 0 0: 0 0 TTTTTTCAGG NM lar+3' SQ YTaAT-yyyyaG AI 00000 2 chain 1 sites find / exp.num. 1.186 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 5816 5774 1.18609 32 0: 0 0 TTAATaagtccccgtttatttctatgtcgcaaggctaTTCCAG NM ORI MT !!! SQ trtgytytr AI 00000 2 chain 3 sites find / exp.num. .454 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 2960 2952 .45355 0 0: 0 0 TGTGCTTTG 2 5463 5455 .45355 0 0: 0 0 TGTGTTTTG 3 6837 6829 .45355 0 0: 0 0 TGTGTTTTG NM ARS-fragment of chlamydomonada SQ raattttaaat CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .113 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 958 968 .11336 0 1: 1 0 ACATTTTAAAT NM ARS of chloroplasts SQ anrtnaccaagt AI 00000 2 chain 2 sites find / exp.num. .411 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 769 758 .41087 0 1: 1 0 AGGTAACCAATT 2 5527 5516 .41087 0 1: 1 0 ATGTTATCAAGT NM ARS of human SQ tattyytaaatttagtxt AI 00000 2 chain 11 sites find / exp.num. .144 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 892 875 .14402 0 4: 4 0 TATTCTTACTTTTAATAC 2 942 925 .01416 0 3: 3 0 TATTCTTATTTTTAATTT 3 977 960 .14402 0 4: 4 0 TATTGTTTAATTTAAAAT 4 996 979 .14402 0 4: 4 0 TATTTTTATATTTTTTTA 5 1018 1001 .01416 0 3: 3 0 TTTTTTTTAATATAGTTT 6 2279 2262 .14402 0 4: 4 0 TCTTTGTAAATTTTGGTT 7 5159 5142 .14402 0 4: 4 0 TTTTGCTCAATTTGGTTT 8 5581 5564 .14402 0 4: 4 0 TATTATTAATTTCAATTT 9 6331 6314 .14402 0 4: 4 0 TATTGTAAACTTTATTTT 10 6514 6497 .14402 0 4: 4 0 TATTATTAAATGAATTTT 11 6819 6802 .00098 0 2: 2 0 TTTTCTTAATTTTAGTTT NM conservative sequence of ORI of adenovirus (AD) SQ cxnymtmxataatataccyyay CC max mismatch : 4 AI 00000 1 chain 1 sites find / exp.num. .068 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 5246 5267 .06787 0 4: 4 0 CAACCAATATTAGATACCCAAC NM sequence repeated nontandemly several times in the origin of t SQ gcctc AI 00000 2 chain 6 sites find / exp.num. 7.261 interval 12 TH num begin end exp.num. dist. mismatch site sequence TD 1 243 239 7.26074 0 0: 0 0 GCCTC 2 318 314 7.26074 0 0: 0 0 GCCTC 3 748 744 7.26074 0 0: 0 0 GCCTC 4 1421 1417 7.26074 0 0: 0 0 GCCTC 5 7170 7166 7.26074 0 0: 0 0 GCCTC 6 7245 7241 7.26074 0 0: 0 0 GCCTC NM consensus sequence of the cores of autonomously replicating SQ xaaayataaax CC max mismatch : 1 AI 00000 1 chain 13 sites find / exp.num. .397 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 837 847 .01417 0 0: 0 0 AAAATATAAAT 2 983 993 .01417 0 0: 0 0 AAAATATAAAA 3 991 1001 .39675 0 1: 1 0 AAAATATTAAA 4 1023 1033 .39675 0 1: 1 0 AAAACAAAAAA 5 1031 1041 .39675 0 1: 1 0 AAAACAAAAAA 6 1043 1053 .39675 0 1: 1 0 AAAAAATAAAT 7 2748 2758 .39675 0 1: 1 0 AAAATGTAAAT 8 4165 4175 .39675 0 1: 1 0 AAAATATATAA 9 4167 4177 .39675 0 1: 1 0 AATATATAAAA 10 6146 6156 .39675 0 1: 1 0 TAAACATTAAA 11 6509 6519 .39675 0 1: 1 0 ATAATATAAAA 12 6515 6525 .39675 0 1: 1 0 TAAAAATAAAA 13 6556 6566 .39675 0 1: 1 0 AAAATAGAAAT AI 00000 2 chain 2 sites find / exp.num. .397 interval 2 TD 1 4334 4324 .39675 0 1: 1 0 AAAATATAACT 2 6762 6752 .39675 0 1: 1 0 TAAATATAAGT NM Promotor of RNA polymerase 1 (mouse, rat) SQ atcttt-tattg AI 00000 2 chain 3 sites find / exp.num. .134 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 2410 2384 .13429 16 1: 1 0 TTCTTTgtatttaattgttataTATTG 2 3102 3073 .13429 19 1: 1 0 TTCTTTggaaccacccagatggggcTATTG 3 5278 5250 .13429 18 1: 1 0 TTCTTTgttttgttgggtatctaaTATTG NM consensus sequence near the 3'-ends of the adenovirus 2 genes SQ gggttg AI 00000 2 chain 3 sites find / exp.num. 1.815 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 801 796 1.81494 0 0: 0 0 GGGTTG 2 2033 2028 1.81494 0 0: 0 0 GGGTTG 3 3786 3781 1.81494 0 0: 0 0 GGGTTG NM consensus sequence near the 3'-ends of the adenovirus 2 genes SQ ttgggg CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. 1.815 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 3902 3907 1.81494 0 0: 0 0 TTGGGG AI 00000 2 chain 2 sites find / exp.num. 1.815 interval 4 TD 1 2036 2031 1.81494 0 0: 0 0 TTGGGG 2 2386 2381 1.81494 0 0: 0 0 TTGGGG NM one of two suggested consensus sequences for RNA-polymerase I SQ ggttgg AI 00000 2 chain 3 sites find / exp.num. 1.815 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 1918 1913 1.81494 0 0: 0 0 GGTTGG 2 3524 3519 1.81494 0 0: 0 0 GGTTGG 3 3785 3780 1.81494 0 0: 0 0 GGTTGG NM sequence within the promoter of the human mitochondrial gene SQ cccacacccctgtc CC max mismatch : 3 AI 00000 1 chain 1 sites find / exp.num. .296 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1366 1379 .29573 0 3: 3 0 CCCAGACCCCTAAC NM consensus of the TATA-box of Dictyostelium promoters SQ tataaaxa CC max mismatch : 0 AI 00000 1 chain 3 sites find / exp.num. .227 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 841 848 .22681 0 0: 0 0 TATAAATA 2 987 994 .22681 0 0: 0 0 TATAAAAA 3 6513 6520 .22681 0 0: 0 0 TATAAAAA AI 00000 2 chain 1 sites find / exp.num. .227 interval 1 TD 1 5750 5743 .22681 0 0: 0 0 TATAAAAA NM "Goldberg-Hogness box";consensus sequence belonging to eukar SQ tataxax CC max mismatch : 0 AI 00000 1 chain 8 sites find / exp.num. 1.815 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 841 847 1.81470 0 0: 0 0 TATAAAT 2 987 993 1.81470 0 0: 0 0 TATAAAA 3 2387 2393 1.81470 0 0: 0 0 TATATAA 4 4162 4168 1.81470 0 0: 0 0 TATAAAA 5 4169 4175 1.81470 0 0: 0 0 TATATAA 6 4171 4177 1.81470 0 0: 0 0 TATAAAA 7 5417 5423 1.81470 0 0: 0 0 TATAAAA 8 6513 6519 1.81470 0 0: 0 0 TATAAAA AI 00000 2 chain 4 sites find / exp.num. 1.815 interval 4 TD 1 2392 2386 1.81470 0 0: 0 0 TATATAT 2 4174 4168 1.81470 0 0: 0 0 TATATAT 3 5750 5744 1.81470 0 0: 0 0 TATAAAA 4 6017 6011 1.81470 0 0: 0 0 TATAAAA NM consensus sequence of a tentative transcription initiation SQ aagtta CC max mismatch : 0 AI 00000 1 chain 5 sites find / exp.num. 1.815 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 1288 1293 1.81494 0 0: 0 0 AAGTTA 2 2662 2667 1.81494 0 0: 0 0 AAGTTA 3 4323 4328 1.81494 0 0: 0 0 AAGTTA 4 4356 4361 1.81494 0 0: 0 0 AAGTTA 5 4964 4969 1.81494 0 0: 0 0 AAGTTA AI 00000 2 chain 1 sites find / exp.num. 1.815 interval 4 TD 1 6221 6216 1.81494 0 0: 0 0 AAGTTA NM sequence frequently found in the promoter region of histone SQ ccgca CC max mismatch : 0 AI 00000 1 chain 4 sites find / exp.num. 7.261 interval 12 TH num begin end exp.num. dist. mismatch site sequence TD 1 54 58 7.26074 0 0: 0 0 CCGCA 2 1454 1458 7.26074 0 0: 0 0 CCGCA 3 4506 4510 7.26074 0 0: 0 0 CCGCA 4 6981 6985 7.26074 0 0: 0 0 CCGCA AI 00000 2 chain 2 sites find / exp.num. 7.261 interval 12 TD 1 553 549 7.26074 0 0: 0 0 CCGCA 2 4589 4585 7.26074 0 0: 0 0 CCGCA NM Sequence located at the 3'-ends of yeast genes,presumably SQ tttttata CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .113 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 5743 5750 .11340 0 0: 0 0 TTTTTATA AI 00000 2 chain 2 sites find / exp.num. .113 interval 1 TD 1 994 987 .11340 0 0: 0 0 TTTTTATA 2 6520 6513 .11340 0 0: 0 0 TTTTTATA NM Preferential site of transcription termination in yeast gene SQ caaqctttg AI 00000 2 chain 1 sites find / exp.num. .057 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 2863 2855 .05669 0 0: 0 0 CAATCTTTG NM Consensus of a presumed polyadenylation signal in Trypanosom SQ aaaattyt CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. .227 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 908 915 .22681 0 0: 0 0 AAAATTCT 2 2353 2360 .22681 0 0: 0 0 AAAATTTT AI 00000 2 chain 1 sites find / exp.num. .227 interval 1 TD 1 2360 2353 .22681 0 0: 0 0 AAAATTTT NM Signal of formiration 3'-end in mnRNA SQ gttyn-aaarryaga CC distance between two blocks of site: min = 0 max = 3 CC max mismatch in 1-st block: 0, in 2-nd block: 1 AI 00000 1 chain 1 sites find / exp.num. .156 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 3293 3306 .15577 0 1: 0 1 GTTTCAAAGACAGC NM Consensus mRNA cap site in Drosophila Cell 29,1027 (Gnomic) SQ yatcxgq CC max mismatch : 0 AI 00000 1 chain 3 sites find / exp.num. 3.629 interval 7 TH num begin end exp.num. dist. mismatch site sequence TD 1 716 722 3.62939 0 0: 0 0 TATCAGG 2 3082 3088 3.62939 0 0: 0 0 CATCTGG 3 3111 3117 3.62939 0 0: 0 0 CATCAGG AI 00000 2 chain 3 sites find / exp.num. 3.629 interval 7 TD 1 3599 3593 3.62939 0 0: 0 0 CATCTGG 2 5631 5625 3.62939 0 0: 0 0 TATCTGG 3 6421 6415 3.62939 0 0: 0 0 CATCTGT NM "Cap box";one of a number of homology blocks at the 5'-ends SQ ycattcr CC max mismatch : 0 AI 00000 1 chain 5 sites find / exp.num. 1.815 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 2216 2222 1.81470 0 0: 0 0 CCATTCA 2 3347 3353 1.81470 0 0: 0 0 CCATTCG 3 3630 3636 1.81470 0 0: 0 0 CCATTCA 4 4497 4503 1.81470 0 0: 0 0 TCATTCA 5 6781 6787 1.81470 0 0: 0 0 CCATTCA AI 00000 2 chain 1 sites find / exp.num. 1.815 interval 4 TD 1 3396 3390 1.81470 0 0: 0 0 TCATTCA NM RNA processing in mitochondria NAR 13,31(Gnomic) SQ attcatac CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .113 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 2504 2511 .11340 0 0: 0 0 ATTCATAC NM Sequence present near the 3'-ends of yeast mitochondrial gen SQ aagaatat AI 00000 2 chain 2 sites find / exp.num. .113 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 301 294 .11340 0 0: 0 0 AAGAATAT 2 7228 7221 .11340 0 0: 0 0 AAGAATAT NM Site of splising of vertebrates 3'-end: PNAS (1984) V 81 N 2 SQ yyyyyncagg AI 00000 2 chain 3 sites find / exp.num. .907 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 1445 1436 .90698 0 0: 0 0 TTCTTCCAGG 2 2881 2872 .90698 0 0: 0 0 TTTCTGCAGG 3 3623 3614 .90698 0 0: 0 0 TTTTTTCAGG NM Site of splising of plants 3'-end: NAR (1986) V 14 N 24 P 95 SQ tttkttkkkktgcagg AI 00000 2 chain 3 sites find / exp.num. .246 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 172 157 .24647 0 2: 2 0 TTTATTAGAATGCATA 2 3812 3797 .24647 0 2: 2 0 ATTTTTTAAATGCAGA 3 7099 7084 .24647 0 2: 2 0 TTTATTAGAATGCATA NM Conservative blocks in selfsplising introns 1 group box 2: SQ aagatatagtcc CC max mismatch : 2 AI 00000 1 chain 1 sites find / exp.num. .279 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 785 796 .27937 0 2: 2 0 AAGCTATAGTGC AI 00000 2 chain 1 sites find / exp.num. .279 interval 1 TD 1 3210 3199 .27937 0 2: 2 0 AAGATTTCGTCC NM Consensus sequence found in the same location in intervening SQ aaaatctt AI 00000 2 chain 1 sites find / exp.num. .113 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 2565 2558 .11340 0 0: 0 0 AAAATCTT NM SECOND MOTIF OF Ad5 E1a SQ zgcgxaa CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. 1.815 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 4802 4808 1.81470 0 0: 0 0 CGCGAAA NM DECAMER FROM IMMUNOGLOBULIN GENES SQ AtGCAAAtna CC max mismatch : 1 AI 00000 1 chain 2 sites find / exp.num. .283 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 5356 5365 .28343 0 1: 1 0 AGGCAAATTA 2 5962 5971 .28343 0 1: 1 0 ATGCAAAAGA NM Mol.Cel.Biol. v62 n8 p1925 E2-PROTEINE OF PAPILLOMPAVIRUS SQ acc-ggt CC distance between two blocks of site: min = 6 max = 6 CC max mismatch in 1-st block: 0, in 2-nd block: 0 AI 00000 1 chain 1 sites find / exp.num. 1.813 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 3314 3325 1.81348 6 0: 0 0 ACCaagcacGGT AI 00000 2 chain 1 sites find / exp.num. 1.813 interval 4 TD 1 3325 3314 1.81348 6 0: 0 0 ACCgtgcttGGT NM E MOTIF Ig ENHANCER SQ cAgnTGGc AI 00000 2 chain 2 sites find / exp.num. .454 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 151 144 .45361 0 0: 0 0 CAGATGGC 2 7078 7071 .45361 0 0: 0 0 CAGATGGC NM LVa MOTIF MoMuLV ENHANCER (Mol Cell Biol v7 n3 p1101) SQ gaacag CC max mismatch : 0 AI 00000 1 chain 3 sites find / exp.num. 1.815 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 2343 2348 1.81494 0 0: 0 0 GAACAG 2 2732 2737 1.81494 0 0: 0 0 GAACAG 3 3002 3007 1.81494 0 0: 0 0 GAACAG NM LVc MOTIF MoMuLV ENHANCER (Mol Cell Biol v7 n3 p1101) SQ cctgc CC max mismatch : 0 AI 00000 1 chain 6 sites find / exp.num. 7.261 interval 12 TH num begin end exp.num. dist. mismatch site sequence TD 1 227 231 7.26074 0 0: 0 0 CCTGC 2 2872 2876 7.26074 0 0: 0 0 CCTGC 3 3478 3482 7.26074 0 0: 0 0 CCTGC 4 4546 4550 7.26074 0 0: 0 0 CCTGC 5 5219 5223 7.26074 0 0: 0 0 CCTGC 6 7154 7158 7.26074 0 0: 0 0 CCTGC NM LYSOZYME SILENCER 4 (EMBO j v6 n8 p2298) SQ atnnAgtaaaa CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .028 interval 0 TH num begin end exp.num. dist. mismatch site sequence TD 1 6233 6243 .02834 0 0: 0 0 ATACAGTAAAA NM INTERFERONE BETA ENHANCER (J.Mol Biol v204 n2 p221) SQ aaxanngaaaggr CC max mismatch : 1 AI 00000 1 chain 2 sites find / exp.num. .212 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 5469 5481 .21249 0 1: 1 0 AAAAACGAAAGAA 2 6516 6528 .21249 0 1: 1 0 AAAAATAAAAGGA NM Enchanser region of virus PV SQ gctgtgqttttgca AI 00000 2 chain 1 sites find / exp.num. .043 interval 0 TH num begin end exp.num. dist. mismatch site sequence TD 1 4751 4738 .04327 0 2: 2 0 GCTCTGTTTTTGCC NM Enchanser region of virus MSV SQ tctgtggtaaag CC max mismatch : 2 AI 00000 1 chain 1 sites find / exp.num. .279 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 529 540 .27937 0 2: 2 0 TCAGTGTTAAAG AI 00000 2 chain 1 sites find / exp.num. .279 interval 1 TD 1 3885 3874 .27937 0 2: 2 0 TCTGTGGTTAAA NM Enchanser region of virus LPV SQ aagtctgcanagtctgca CC max mismatch : 4 AI 00000 1 chain 1 sites find / exp.num. .092 interval 1 TH num begin end exp.num. dist. mismatch site sequence AI 1 4905 4922 .09177 0 4: 4 0 AAGACTGGATAGAATGCA AI 00000 2 chain 1 sites find / exp.num. .092 interval 1 TD 1 3729 3712 .00848 0 3: 3 0 ATGTCTGCAAAGTTTGGA NM Conservative elements of Ig enchanser (E1,E2,E3,E4,OCTA) SQ agcagctggc AI 00000 2 chain 1 sites find / exp.num. .220 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 4698 4689 .21966 0 1: 1 0 AGTAGCTGGC NM Conservative elements of Ig enchanser (B,E1,E2,E3) SQ gccatctggc CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .220 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 4731 4740 .21966 0 1: 1 0 GCAATCTGGC NM potential core sequence of enhancers of various human viruses SQ cxxxccac CC max mismatch : 0 AI 00000 1 chain 3 sites find / exp.num. .907 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 1375 1382 .90723 0 0: 0 0 CTAACCAC 2 5588 5595 .90723 0 0: 0 0 CAAACCAC 3 6407 6414 .90723 0 0: 0 0 CAATCCAC AI 00000 2 chain 1 sites find / exp.num. .907 interval 3 TD 1 4456 4449 .90723 0 0: 0 0 CTTACCAC NM enhancer core SV40 SQ tGTGgxxx CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. .907 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 4448 4455 .90723 0 0: 0 0 TGTGGTAA 2 6051 6058 .90723 0 0: 0 0 TGTGGAAA AI 00000 2 chain 7 sites find / exp.num. .907 interval 3 TD 1 27 20 .90723 0 0: 0 0 TGTGGTTT 2 1596 1589 .90723 0 0: 0 0 TGTGGTTA 3 3571 3564 .90723 0 0: 0 0 TGTGGTTT 4 3883 3876 .90723 0 0: 0 0 TGTGGTTA 5 4783 4776 .90723 0 0: 0 0 TGTGGTTT 6 6415 6408 .90723 0 0: 0 0 TGTGGATT 7 6954 6947 .90723 0 0: 0 0 TGTGGTTT NM SV40 ENHANCER CORE SQ tgtggxxxg CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .227 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 4448 4456 .22678 0 0: 0 0 TGTGGTAAG AI 00000 2 chain 1 sites find / exp.num. .227 interval 1 TD 1 6415 6407 .22678 0 0: 0 0 TGTGGATTG NM Mol.Cel.Biol. v5 n4 p649 H21.3.3 SQ ccaccca AI 00000 2 chain 1 sites find / exp.num. .454 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 3092 3086 .45367 0 0: 0 0 CCACCCA NM LVb MOTIF MoMuLV ENHANCER (Mol Cell Biol v7 n3 p1101) SQ caggata CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .454 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 3690 3696 .45367 0 0: 0 0 CAGGATA NM INSULIN ENHANCER (pnas v84 p8819) SQ gccatctgc CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. .028 interval 0 TH num begin end exp.num. dist. mismatch site sequence TD 1 144 152 .02835 0 0: 0 0 GCCATCTGC 2 7071 7079 .02835 0 0: 0 0 GCCATCTGC NM Consensus enchanser region of virus SV40 SQ rrtgtggxxx CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .227 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 6049 6058 .22675 0 0: 0 0 GATGTGGAAA AI 00000 2 chain 2 sites find / exp.num. .227 interval 1 TD 1 3573 3564 .22675 0 0: 0 0 AATGTGGTTT 2 4785 4776 .22675 0 0: 0 0 GGTGTGGTTT NM Block C of enchanser of virus SV40 SQ tgtggaaagtcccca CC max mismatch : 3 AI 00000 1 chain 1 sites find / exp.num. .092 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1398 1412 .09180 0 3: 3 0 TTTCGAAAGACCCCA NM Domen D1 of enchanser of virus AD SQ aggaagtgama CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .113 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 6924 6934 .11336 0 1: 1 0 GGGAAGTGACA NM Conservative elements of Ig enchanser (E1,E2,E3,E4,OCTA) SQ gtcatgtggc AI 00000 2 chain 1 sites find / exp.num. .220 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1123 1114 .21966 0 1: 1 0 GTCATGTTGC NM Direct repeat in mielin proteolipid genes SQ gggaggagrrg AI 00000 2 chain 2 sites find / exp.num. .213 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 253 243 .21255 0 1: 1 0 TGGAGGAGAAG 2 7180 7170 .21255 0 1: 1 0 TGGAGGAGAAG NM AP4 FACTOR Nature v332 1988 p557 SQ yCAGCtgygG AI 00000 2 chain 1 sites find / exp.num. .453 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 5693 5684 .45349 0 1: 1 0 TCAGCTATGG NM NFY SQ ccaat CC max mismatch : 0 AI 00000 1 chain 19 sites find / exp.num. 7.261 interval 12 TH num begin end exp.num. dist. mismatch site sequence TD 1 566 570 7.26074 0 0: 0 0 CCAAT 2 756 760 7.26074 0 0: 0 0 CCAAT 3 1785 1789 7.26074 0 0: 0 0 CCAAT 4 1851 1855 7.26074 0 0: 0 0 CCAAT 5 1974 1978 7.26074 0 0: 0 0 CCAAT 6 1987 1991 7.26074 0 0: 0 0 CCAAT 7 2033 2037 7.26074 0 0: 0 0 CCAAT 8 2080 2084 7.26074 0 0: 0 0 CCAAT 9 2088 2092 7.26074 0 0: 0 0 CCAAT 10 2335 2339 7.26074 0 0: 0 0 CCAAT 11 2383 2387 7.26074 0 0: 0 0 CCAAT 12 2480 2484 7.26074 0 0: 0 0 CCAAT 13 3185 3189 7.26074 0 0: 0 0 CCAAT 14 3644 3648 7.26074 0 0: 0 0 CCAAT 15 3836 3840 7.26074 0 0: 0 0 CCAAT 16 5249 5253 7.26074 0 0: 0 0 CCAAT 17 6186 6190 7.26074 0 0: 0 0 CCAAT 18 6388 6392 7.26074 0 0: 0 0 CCAAT 19 6549 6553 7.26074 0 0: 0 0 CCAAT AI 00000 2 chain 7 sites find / exp.num. 7.261 interval 12 TD 1 514 510 7.26074 0 0: 0 0 CCAAT 2 763 759 7.26074 0 0: 0 0 CCAAT 3 1144 1140 7.26074 0 0: 0 0 CCAAT 4 1306 1302 7.26074 0 0: 0 0 CCAAT 5 1350 1346 7.26074 0 0: 0 0 CCAAT 6 2831 2827 7.26074 0 0: 0 0 CCAAT 7 3221 3217 7.26074 0 0: 0 0 CCAAT NM CRF FACTOR(CCAAT-BOX BINDING FACTOR) SQ tnnnCCatnnC AI 00000 2 chain 1 sites find / exp.num. 1.814 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 6860 6850 1.81372 0 0: 0 0 TCTTCCATTTC NM LARGE T PROTEIN OF PAPILLOMA VIRUS SQ xgrggc CC max mismatch : 0 TD 00000 1 chain 5 sites find / exp.num. 7.260 interval 12 TH num begin end exp.num. dist. mismatch site sequence TD 1 238 243 7.25977 0 0: 0 0 TGAGGC 2 313 318 7.25977 0 0: 0 0 AGAGGC 3 743 748 7.25977 0 0: 0 0 AGAGGC 4 7165 7170 7.25977 0 0: 0 0 TGAGGC 5 7240 7245 7.25977 0 0: 0 0 AGAGGC AI 00000 2 chain 1 sites find / exp.num. 7.260 interval 12 TD 1 3083 3078 7.25977 0 0: 0 0 TGGGGC NM RPG FACTOR SQ tgg-cca CC distance between two blocks of site: min = 7 max = 7 CC max mismatch in 1-st block: 0, in 2-nd block: 0 AI 00000 1 chain 1 sites find / exp.num. 1.813 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 3598 3610 1.81323 7 0: 0 0 TGGaataaaaCCA AI 00000 2 chain 1 sites find / exp.num. 1.813 interval 4 TD 1 3610 3598 1.81323 7 0: 0 0 TGGttttattCCA NM Consensus sequence for cAMP receptor protein (CRP or CAP) SQ aantgtganntnnnnca CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .219 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 3542 3558 .21945 0 1: 1 0 AAATGTGAGTTTCTCAA NM Consensus sequence of several adenoviral promoters located at SQ gyrgytttc CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .227 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 6066 6074 .22678 0 0: 0 0 GCAGCTTTC AI 00000 2 chain 3 sites find / exp.num. .227 interval 1 TD 1 1457 1449 .22678 0 0: 0 0 GCGGCTTTC 2 4653 4645 .22678 0 0: 0 0 GTAGTTTTC 3 4782 4774 .22678 0 0: 0 0 GTGGTTTTC NM Site of initiation of translation in genes of animals SQ zaannatgg CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. .907 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 1069 1077 .90710 0 0: 0 0 CAAAAATGG 2 3192 3200 .90710 0 0: 0 0 CAAACATGG AI 00000 2 chain 3 sites find / exp.num. .907 interval 3 TD 1 206 198 .90710 0 0: 0 0 CAAGAATGG 2 4449 4441 .90710 0 0: 0 0 CAAAAATGG 3 7133 7125 .90710 0 0: 0 0 CAAGAATGG NM HEAVY METALL RESPONSIVE ELEMENT SQ tgCrcyc CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. 1.815 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 2592 2598 1.81470 0 0: 0 0 TGCACCC 2 5727 5733 1.81470 0 0: 0 0 TGCACCC AI 00000 2 chain 1 sites find / exp.num. 1.815 interval 4 TD 1 4724 4718 1.81470 0 0: 0 0 TGCACTC NM SRE ELEMENT OF HSP70 pnas v84 n8 p2203 H21.30 SQ aagggaaaag CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .220 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 4175 4184 .21966 0 1: 1 0 AAAGGAAAAG NM GLUCOCORTICOID RESPONSIVE ELEMENT SQ gnnjCj-tGttCt AI 00000 2 chain 1 sites find / exp.num. .191 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 2292 2277 .19119 4 0: 0 0 GTAACTgttgTGTTCT NM Consensus sequence of the recognition sites for the glucocorti SQ tgttct CC max mismatch : 0 AI 00000 1 chain 3 sites find / exp.num. 1.815 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 576 581 1.81494 0 0: 0 0 TGTTCT 2 585 590 1.81494 0 0: 0 0 TGTTCT 3 3583 3588 1.81494 0 0: 0 0 TGTTCT AI 00000 2 chain 3 sites find / exp.num. 1.815 interval 4 TD 1 2282 2277 1.81494 0 0: 0 0 TGTTCT 2 3764 3759 1.81494 0 0: 0 0 TGTTCT 3 4797 4792 1.81494 0 0: 0 0 TGTTCT NM Consensus of putative activator sequence of immediate early SQ taatgarat CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .057 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 6675 6683 .05669 0 0: 0 0 TAATGAAAT NM Site of induction J-strand of Ig genes M SQ tcatttgcac CC max mismatch : 1 AI 00000 1 chain 2 sites find / exp.num. .220 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 325 334 .21966 0 1: 1 0 TCATTTTCAC 2 7252 7261 .21966 0 1: 1 0 TCATTTTCAC NM Element of promotor of interferone GAMMA SQ aagtgtaat-gagtnnnct AI 00000 2 chain 2 sites find / exp.num. .185 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 336 315 .18478 4 3: 2 1 AAGTGAAAAtgagGAGAAGCCT 2 7263 7242 .18478 4 3: 2 1 AAGTGAAAAtgagGAGAAGCCT NM Consensus sequense of several binding sites of the glucocorti SQ gnnacaanntgtyct AI 00000 2 chain 1 sites find / exp.num. .113 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 3591 3577 .11330 0 1: 1 0 GTTAGAACATGTCCT NM MUSCUL-SPECIFIC FACTOR SQ axxtatncat AI 00000 2 chain 1 sites find / exp.num. .113 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 3339 3330 .11337 0 0: 0 0 AAATATTCAT NM LIVER-SPECIFIC FACtOR SQ TCntacTC AI 00000 2 chain 1 sites find / exp.num. .454 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 5319 5312 .45361 0 0: 0 0 TCGTACTC NM CCCAC-BOX BINDING FACTOR SQ cccac CC max mismatch : 0 AI 00000 1 chain 6 sites find / exp.num. 7.261 interval 12 TH num begin end exp.num. dist. mismatch site sequence TD 1 618 622 7.26074 0 0: 0 0 CCCAC 2 776 780 7.26074 0 0: 0 0 CCCAC 3 1835 1839 7.26074 0 0: 0 0 CCCAC 4 2989 2993 7.26074 0 0: 0 0 CCCAC 5 3650 3654 7.26074 0 0: 0 0 CCCAC 6 3931 3935 7.26074 0 0: 0 0 CCCAC NM ANTITROMBIN-III ENHANCER SPECIFIC FACTOR SQ gtGGxxxg CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .907 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 4449 4456 .90723 0 0: 0 0 GTGGTAAG AI 00000 2 chain 3 sites find / exp.num. .907 interval 3 TD 1 1382 1375 .90723 0 0: 0 0 GTGGTTAG 2 5595 5588 .90723 0 0: 0 0 GTGGTTTG 3 6414 6407 .90723 0 0: 0 0 GTGGATTG NM cycle histone MCB 85 5 2 380 389 SQ GAYTTC CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. 3.630 interval 7 TH num begin end exp.num. dist. mismatch site sequence TD 1 4487 4492 3.62988 0 0: 0 0 GATTTC 2 6684 6689 3.62988 0 0: 0 0 GATTTC AI 00000 2 chain 5 sites find / exp.num. 3.630 interval 7 TD 1 3208 3203 3.62988 0 0: 0 0 GATTTC 2 4498 4493 3.62988 0 0: 0 0 GACTTC 3 5038 5033 3.62988 0 0: 0 0 GACTTC 4 5323 5318 3.62988 0 0: 0 0 GACTTC 5 6567 6562 3.62988 0 0: 0 0 GATTTC NM cycle cell 86 45 4 537 544 trt1 SQ GCGAAA CC max mismatch : 0 AI 00000 1 chain 3 sites find / exp.num. 1.815 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 804 809 1.81494 0 0: 0 0 GCGAAA 2 861 866 1.81494 0 0: 0 0 GCGAAA 3 4803 4808 1.81494 0 0: 0 0 GCGAAA NM cycle cell 86 45 4 537 544 yeast histone cdc9 SQ cacgaaaa CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .113 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 778 785 .11340 0 0: 0 0 CACGAAAA NM Regulating element of promotor of contractive(KONTRAKTILNIY) SQ cattcct CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .454 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 1432 1438 .45367 0 0: 0 0 CATTCCT NM Consensus sequence of transcription regulation sites near SQ cytttgcryycg AI 00000 2 chain 1 sites find / exp.num. .205 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 5970 5959 .20543 0 1: 1 0 CTTTTGCATTCC NM Sequence repeated 5 times in the promoter of the mouse SQ gaaga CC max mismatch : 0 AI 00000 1 chain 15 sites find / exp.num. 7.261 interval 12 TH num begin end exp.num. dist. mismatch site sequence TD 1 722 726 7.26074 0 0: 0 0 GAAGA 2 1339 1343 7.26074 0 0: 0 0 GAAGA 3 1392 1396 7.26074 0 0: 0 0 GAAGA 4 1440 1444 7.26074 0 0: 0 0 GAAGA 5 1500 1504 7.26074 0 0: 0 0 GAAGA 6 2628 2632 7.26074 0 0: 0 0 GAAGA 7 2846 2850 7.26074 0 0: 0 0 GAAGA 8 3830 3834 7.26074 0 0: 0 0 GAAGA 9 4047 4051 7.26074 0 0: 0 0 GAAGA 10 4262 4266 7.26074 0 0: 0 0 GAAGA 11 4889 4893 7.26074 0 0: 0 0 GAAGA 12 5138 5142 7.26074 0 0: 0 0 GAAGA 13 5762 5766 7.26074 0 0: 0 0 GAAGA 14 6046 6050 7.26074 0 0: 0 0 GAAGA 15 6856 6860 7.26074 0 0: 0 0 GAAGA NM "CCAAT box";one of a number of homology blocks at the 5'-ends SQ grccaatnr CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .454 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 2086 2094 .45355 0 0: 0 0 GACCAATAA NM Consensus sequence of repeated hexanucleotides within the 5'- SQ aarqga CC max mismatch : 0 AI 00000 1 chain 20 sites find / exp.num. 7.260 interval 12 TH num begin end exp.num. dist. mismatch site sequence TD 1 71 76 7.25977 0 0: 0 0 AAGTGA 2 669 674 7.25977 0 0: 0 0 AAGTGA 3 903 908 7.25977 0 0: 0 0 AAGTGA 4 2578 2583 7.25977 0 0: 0 0 AAATGA 5 3157 3162 7.25977 0 0: 0 0 AAATGA 6 3889 3894 7.25977 0 0: 0 0 AAGTGA 7 4175 4180 7.25977 0 0: 0 0 AAAGGA 8 4337 4342 7.25977 0 0: 0 0 AAAGGA 9 4714 4719 7.25977 0 0: 0 0 AAATGA 10 5756 5761 7.25977 0 0: 0 0 AAATGA 11 5862 5867 7.25977 0 0: 0 0 AAATGA 12 5952 5957 7.25977 0 0: 0 0 AAATGA 13 6523 6528 7.25977 0 0: 0 0 AAAGGA 14 6533 6538 7.25977 0 0: 0 0 AAATGA 15 6582 6587 7.25977 0 0: 0 0 AAGTGA 16 6680 6685 7.25977 0 0: 0 0 AAATGA 17 6917 6922 7.25977 0 0: 0 0 AAGGGA 18 6922 6927 7.25977 0 0: 0 0 AAGGGA 19 6927 6932 7.25977 0 0: 0 0 AAGTGA 20 6998 7003 7.25977 0 0: 0 0 AAGTGA AI 00000 2 chain 17 sites find / exp.num. 7.260 interval 12 TD 1 330 325 7.25977 0 0: 0 0 AAATGA 2 336 331 7.25977 0 0: 0 0 AAGTGA 3 342 337 7.25977 0 0: 0 0 AAATGA 4 1619 1614 7.25977 0 0: 0 0 AAGTGA 5 1718 1713 7.25977 0 0: 0 0 AAAGGA 6 2745 2740 7.25977 0 0: 0 0 AAATGA 7 3469 3464 7.25977 0 0: 0 0 AAGGGA 8 3875 3870 7.25977 0 0: 0 0 AAGTGA 9 5376 5371 7.25977 0 0: 0 0 AAAGGA 10 5608 5603 7.25977 0 0: 0 0 AAAGGA 11 5643 5638 7.25977 0 0: 0 0 AAAGGA 12 6253 6248 7.25977 0 0: 0 0 AAGGGA 13 6507 6502 7.25977 0 0: 0 0 AAATGA 14 6777 6772 7.25977 0 0: 0 0 AAATGA 15 7257 7252 7.25977 0 0: 0 0 AAATGA 16 7263 7258 7.25977 0 0: 0 0 AAGTGA 17 7269 7264 7.25977 0 0: 0 0 AAATGA NM Sequence frequently found in the promoter region of histone H SQ cgcac CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. 7.261 interval 12 TH num begin end exp.num. dist. mismatch site sequence TD 1 2866 2870 7.26074 0 0: 0 0 CGCAC 2 4507 4511 7.26074 0 0: 0 0 CGCAC AI 00000 2 chain 2 sites find / exp.num. 7.261 interval 12 TD 1 2867 2863 7.26074 0 0: 0 0 CGCAC 2 4465 4461 7.26074 0 0: 0 0 CGCAC