ID DM297 DE D.MELANOGASTER TRANSP.ELEMENT 297 Seq.(2811 1856 972 1356 6995 pos.) NM POLIMERASE II SQ tATAaa CC max mismatch : 0 AI 00000 1 chain 3 sites find / exp.num. 1.707 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 635 640 1.70654 0 0: 0 0 TATAAA 2 1748 1753 1.70654 0 0: 0 0 TATAAA 3 6227 6232 1.70654 0 0: 0 0 TATAAA AI 00000 2 chain 6 sites find / exp.num. 1.707 interval 4 TD 1 486 481 1.70654 0 0: 0 0 TATAAA 2 1238 1233 1.70654 0 0: 0 0 TATAAA 3 4126 4121 1.70654 0 0: 0 0 TATAAA 4 5192 5187 1.70654 0 0: 0 0 TATAAA 5 5404 5399 1.70654 0 0: 0 0 TATAAA 6 5982 5977 1.70654 0 0: 0 0 TATAAA NM Inr (ripl.POLIMERASE II) SQ NTCAQTY CC max mismatch : 0 AI 00000 1 chain 6 sites find / exp.num. 6.825 interval 11 TH num begin end exp.num. dist. mismatch site sequence TD 1 1656 1662 6.82520 0 0: 0 0 ATCATTT 2 2307 2313 6.82520 0 0: 0 0 ATCAGTT 3 3840 3846 6.82520 0 0: 0 0 TTCAGTT 4 3935 3941 6.82520 0 0: 0 0 TTCATTT 5 4504 4510 6.82520 0 0: 0 0 ATCAGTT 6 6425 6431 6.82520 0 0: 0 0 ATCATTT AI 00000 2 chain 15 sites find / exp.num. 6.825 interval 11 TD 1 373 367 6.82520 0 0: 0 0 GTCAGTT 2 955 949 6.82520 0 0: 0 0 ATCATTT 3 1360 1354 6.82520 0 0: 0 0 CTCATTT 4 2331 2325 6.82520 0 0: 0 0 ATCATTT 5 2814 2808 6.82520 0 0: 0 0 TTCATTT 6 4307 4301 6.82520 0 0: 0 0 GTCATTT 7 4761 4755 6.82520 0 0: 0 0 TTCATTT 8 4956 4950 6.82520 0 0: 0 0 TTCATTT 9 5330 5324 6.82520 0 0: 0 0 TTCAGTT 10 5522 5516 6.82520 0 0: 0 0 ATCATTT 11 5612 5606 6.82520 0 0: 0 0 GTCATTT 12 6011 6005 6.82520 0 0: 0 0 TTCATTT 13 6193 6187 6.82520 0 0: 0 0 ATCATTT 14 6376 6370 6.82520 0 0: 0 0 ATCATTT 15 6954 6948 6.82520 0 0: 0 0 GTCAGTT NM n=55;found upstream from the promoter of the pheasant conalbu- SQ ggaaa CC max mismatch : 0 AI 00000 1 chain 12 sites find / exp.num. 6.827 interval 11 TH num begin end exp.num. dist. mismatch site sequence TD 1 465 469 6.82715 0 0: 0 0 GGAAA 2 1275 1279 6.82715 0 0: 0 0 GGAAA 3 1712 1716 6.82715 0 0: 0 0 GGAAA 4 2029 2033 6.82715 0 0: 0 0 GGAAA 5 2496 2500 6.82715 0 0: 0 0 GGAAA 6 2679 2683 6.82715 0 0: 0 0 GGAAA 7 2706 2710 6.82715 0 0: 0 0 GGAAA 8 3830 3834 6.82715 0 0: 0 0 GGAAA 9 4492 4496 6.82715 0 0: 0 0 GGAAA 10 4609 4613 6.82715 0 0: 0 0 GGAAA 11 5708 5712 6.82715 0 0: 0 0 GGAAA 12 6180 6184 6.82715 0 0: 0 0 GGAAA AI 00000 2 chain 9 sites find / exp.num. 6.827 interval 11 TD 1 77 73 6.82715 0 0: 0 0 GGAAA 2 1664 1660 6.82715 0 0: 0 0 GGAAA 3 1692 1688 6.82715 0 0: 0 0 GGAAA 4 3331 3327 6.82715 0 0: 0 0 GGAAA 5 4216 4212 6.82715 0 0: 0 0 GGAAA 6 4337 4333 6.82715 0 0: 0 0 GGAAA 7 5729 5725 6.82715 0 0: 0 0 GGAAA 8 6526 6522 6.82715 0 0: 0 0 GGAAA 9 6658 6654 6.82715 0 0: 0 0 GGAAA NM POLY A SINGLE BLOCK SQ AATAAA CC max mismatch : 0 AI 00000 1 chain 25 sites find / exp.num. 1.707 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 304 309 1.70654 0 0: 0 0 AATAAA 2 395 400 1.70654 0 0: 0 0 AATAAA 3 512 517 1.70654 0 0: 0 0 AATAAA 4 641 646 1.70654 0 0: 0 0 AATAAA 5 768 773 1.70654 0 0: 0 0 AATAAA 6 796 801 1.70654 0 0: 0 0 AATAAA 7 1415 1420 1.70654 0 0: 0 0 AATAAA 8 2445 2450 1.70654 0 0: 0 0 AATAAA 9 2524 2529 1.70654 0 0: 0 0 AATAAA 10 3954 3959 1.70654 0 0: 0 0 AATAAA 11 4000 4005 1.70654 0 0: 0 0 AATAAA 12 4365 4370 1.70654 0 0: 0 0 AATAAA 13 4752 4757 1.70654 0 0: 0 0 AATAAA 14 4947 4952 1.70654 0 0: 0 0 AATAAA 15 5140 5145 1.70654 0 0: 0 0 AATAAA 16 5406 5411 1.70654 0 0: 0 0 AATAAA 17 5411 5416 1.70654 0 0: 0 0 AATAAA 18 5970 5975 1.70654 0 0: 0 0 AATAAA 19 5991 5996 1.70654 0 0: 0 0 AATAAA 20 6080 6085 1.70654 0 0: 0 0 AATAAA 21 6162 6167 1.70654 0 0: 0 0 AATAAA 22 6167 6172 1.70654 0 0: 0 0 AATAAA 23 6302 6307 1.70654 0 0: 0 0 AATAAA 24 6885 6890 1.70654 0 0: 0 0 AATAAA 25 6976 6981 1.70654 0 0: 0 0 AATAAA AI 00000 2 chain 9 sites find / exp.num. 1.707 interval 4 TD 1 346 341 1.70654 0 0: 0 0 AATAAA 2 2623 2618 1.70654 0 0: 0 0 AATAAA 3 3363 3358 1.70654 0 0: 0 0 AATAAA 4 3597 3592 1.70654 0 0: 0 0 AATAAA 5 3987 3982 1.70654 0 0: 0 0 AATAAA 6 4483 4478 1.70654 0 0: 0 0 AATAAA 7 4525 4520 1.70654 0 0: 0 0 AATAAA 8 5468 5463 1.70654 0 0: 0 0 AATAAA 9 6927 6922 1.70654 0 0: 0 0 AATAAA NM One of two related variants of a presumed transcription termi SQ tatgt CC max mismatch : 0 AI 00000 1 chain 3 sites find / exp.num. 6.827 interval 11 TH num begin end exp.num. dist. mismatch site sequence TD 1 2199 2203 6.82715 0 0: 0 0 TATGT 2 2242 2246 6.82715 0 0: 0 0 TATGT 3 6420 6424 6.82715 0 0: 0 0 TATGT AI 00000 2 chain 21 sites find / exp.num. 6.827 interval 11 TD 1 636 632 6.82715 0 0: 0 0 TATGT 2 835 831 6.82715 0 0: 0 0 TATGT 3 1630 1626 6.82715 0 0: 0 0 TATGT 4 1722 1718 6.82715 0 0: 0 0 TATGT 5 1749 1745 6.82715 0 0: 0 0 TATGT 6 2046 2042 6.82715 0 0: 0 0 TATGT 7 2357 2353 6.82715 0 0: 0 0 TATGT 8 2608 2604 6.82715 0 0: 0 0 TATGT 9 3237 3233 6.82715 0 0: 0 0 TATGT 10 3381 3377 6.82715 0 0: 0 0 TATGT 11 3447 3443 6.82715 0 0: 0 0 TATGT 12 3907 3903 6.82715 0 0: 0 0 TATGT 13 4170 4166 6.82715 0 0: 0 0 TATGT 14 4383 4379 6.82715 0 0: 0 0 TATGT 15 4408 4404 6.82715 0 0: 0 0 TATGT 16 4835 4831 6.82715 0 0: 0 0 TATGT 17 5448 5444 6.82715 0 0: 0 0 TATGT 18 5699 5695 6.82715 0 0: 0 0 TATGT 19 5864 5860 6.82715 0 0: 0 0 TATGT 20 6092 6088 6.82715 0 0: 0 0 TATGT 21 6368 6364 6.82715 0 0: 0 0 TATGT NM ORI HUM SQ taaatttagt CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .207 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 2526 2535 .20653 0 1: 1 0 TAAATTTAGA AI 00000 2 chain 1 sites find / exp.num. .207 interval 1 TD 1 2533 2524 .20653 0 1: 1 0 TAAATTTATT NM ARS Y XE DM SQ xtttatrtttx CC max mismatch : 1 AI 00000 1 chain 3 sites find / exp.num. .373 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 1232 1242 .37304 0 1: 1 0 ATTTATATTCA 2 4120 4130 .37304 0 1: 1 0 ATTTATATTGA 3 4513 4523 .37304 0 1: 1 0 ATTGATATTTA AI 00000 2 chain 15 sites find / exp.num. .373 interval 2 TD 1 641 631 .37304 0 1: 1 0 TTTTATATGTT 2 647 637 .37304 0 1: 1 0 TTTTATTTTTA 3 649 639 .37304 0 1: 1 0 TTTTTTATTTT 4 703 693 .37304 0 1: 1 0 TTTTTTGTTTT 5 768 758 .37304 0 1: 1 0 TTTTTTGTTTT 6 774 764 .37304 0 1: 1 0 TTTTATTTTTT 7 781 771 .37304 0 1: 1 0 TTTTGTGTTTT 8 1455 1445 .37304 0 1: 1 0 TTTTGTGTTTT 9 1754 1744 .37304 0 1: 1 0 TTTTATATGTA 10 2049 2039 .37304 0 1: 1 0 TTTTATGTATT 11 6175 6165 .37304 0 1: 1 0 ATTTTTATTTT 12 6220 6210 .37304 0 1: 1 0 ATTTCTATTTT 13 6233 6223 .37304 0 1: 1 0 ATTTATATTAT 14 6310 6300 .37304 0 1: 1 0 ATTTTTATTTT 15 6465 6455 .37304 0 1: 1 0 TTTTAAGTTTT NM ARS yeast, xenopus SQ xttttatrtttx AI 00000 2 chain 9 sites find / exp.num. .103 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 642 631 .10324 0 1: 1 0 TTTTTATATGTT 2 648 637 .10324 0 1: 1 0 TTTTTATTTTTA 3 650 639 .10324 0 1: 1 0 ATTTTTTATTTT 4 704 693 .10324 0 1: 1 0 TTTTTTTGTTTT 5 769 758 .10324 0 1: 1 0 TTTTTTTGTTTT 6 1456 1445 .10324 0 1: 1 0 TTTTTGTGTTTT 7 1755 1744 .10324 0 1: 1 0 TTTTTATATGTA 8 2050 2039 .10324 0 1: 1 0 TTTTTATGTATT 9 6466 6455 .10324 0 1: 1 0 ATTTTAAGTTTT NM SAR A BOX OF DROSOFILA j mol biol v198 n 4 p677 &cell v46 n4 SQ aataaayaaa CC max mismatch : 1 AI 00000 1 chain 15 sites find / exp.num. .386 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 391 400 .38642 0 1: 1 0 CATAAATAAA 2 699 708 .38642 0 1: 1 0 AAAAAACAAA 3 764 773 .38642 0 1: 1 0 AAAAAATAAA 4 1623 1632 .38642 0 1: 1 0 AATACATAAA 5 1973 1982 .38642 0 1: 1 0 AACAAACAAA 6 2039 2048 .38642 0 1: 1 0 AATACATAAA 7 2441 2450 .38642 0 1: 1 0 AATCAATAAA 8 2445 2454 .38642 0 1: 1 0 AATAAAAAAA 9 3967 3976 .38642 0 1: 1 0 AAAAAACAAA 10 4365 4374 .38642 0 1: 1 0 AATAAACGAA 11 4752 4761 .38642 0 1: 1 0 AATAAATGAA 12 4947 4956 .38642 0 1: 1 0 AATAAATGAA 13 5122 5131 .38642 0 1: 1 0 AAAAAACAAA 14 6158 6167 .38642 0 1: 1 0 AATTAATAAA 15 6972 6981 .38642 0 1: 1 0 CATAAATAAA AI 00000 2 chain 2 sites find / exp.num. .386 interval 2 TD 1 350 341 .38642 0 1: 1 0 AAGAAATAAA 2 6931 6922 .38642 0 1: 1 0 AAGAAATAAA NM SAR T BOX OF DROSOFILA cell v46 n4 p521 SQ TtXTxTTXtt AI 00000 2 chain 9 sites find / exp.num. .053 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 647 638 .05330 0 0: 0 0 TTTTATTTTT 2 772 763 .05330 0 0: 0 0 TTATTTTTTT 3 774 765 .05330 0 0: 0 0 TTTTATTTTT 4 2454 2445 .05330 0 0: 0 0 TTTTTTTATT 5 5415 5406 .05330 0 0: 0 0 TTATTTTATT 6 6086 6077 .05330 0 0: 0 0 TTTTATTATT 7 6171 6162 .05330 0 0: 0 0 TTATTTTATT 8 6231 6222 .05330 0 0: 0 0 TTATATTATT 9 6308 6299 .05330 0 0: 0 0 TTTTATTTTT NM Initiation of translation in genes of animals SQ zaannatgg CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. .853 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 2843 2851 .85291 0 0: 0 0 CAAATATGG 2 3775 3783 .85291 0 0: 0 0 GAAAGATGG AI 00000 2 chain 2 sites find / exp.num. .853 interval 3 TD 1 1649 1641 .85291 0 0: 0 0 GAATAATGG 2 5658 5650 .85291 0 0: 0 0 CAATGATGG NM lar+3' SQ YTaAT-yyyyaG AI 00000 2 chain 3 sites find / exp.num. 1.115 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 1251 1205 1.11495 36 0: 0 0 TTAATaccctgaatataaataagaaaatccgattggttaccTTCCAG 2 4588 4556 1.11495 22 0: 0 0 TTAATgcgtttctgcattctatccaatCCTTAG 3 5470 5439 1.11495 21 0: 0 0 TTAATaaaaccccgtttgtttctatgTTTCAG NM AUTO SPLACING SQ ctgangangnc-gncgaaac CC distance between two blocks of site: min = 8 max = 11 CC max mismatch in 1-st block: 2, in 2-nd block: 1 AI 00000 1 chain 1 sites find / exp.num. .158 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1171 1199 .15818 10 3: 2 1 GAGACGACGTCaattactaatTTCGAAAC NM ORI MT !!! SQ trtgytytr AI 00000 2 chain 5 sites find / exp.num. .426 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 778 770 .42645 0 0: 0 0 TGTGTTTTA 2 4408 4400 .42645 0 0: 0 0 TATGTTCTG 3 5117 5109 .42645 0 0: 0 0 TGTGTTTTG 4 6321 6313 .42645 0 0: 0 0 TGTGTTTTA 5 6491 6483 .42645 0 0: 0 0 TGTGTTTTG NM ARS-fragment of chlamydomonada SQ attaacaat AI 00000 2 chain 1 sites find / exp.num. .027 interval 0 TH num begin end exp.num. dist. mismatch site sequence TD 1 4182 4174 .02665 0 0: 0 0 ATTAACAAT NM ARS-fragment of chlamydomonada SQ raattttaaat CC max mismatch : 1 AI 00000 1 chain 2 sites find / exp.num. .107 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1076 1086 .10658 0 1: 1 0 GAATTTAAAAT 2 3171 3181 .10658 0 1: 1 0 AAATTTAAAAT AI 00000 2 chain 2 sites find / exp.num. .107 interval 1 1 1088 1078 .00333 0 0: 0 0 GAATTTTAAAT 2 3183 3173 .10658 0 1: 1 0 CAATTTTAAAT NM ARS of chloroplasts SQ anrtnaccaagt CC max mismatch : 1 AI 00000 1 chain 2 sites find / exp.num. .386 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 2664 2675 .38631 0 1: 1 0 AGAAAACCAAGT 2 5834 5845 .38631 0 1: 1 0 TGATAACCAAGT AI 00000 2 chain 2 sites find / exp.num. .386 interval 2 1 2203 2192 .38631 0 1: 1 0 ACATAATCAAGT 2 3236 3225 .38631 0 1: 1 0 ATGTGACCAAGA NM ARS of human SQ tattyytaaatttagtxt AI 00000 2 chain 7 sites find / exp.num. .135 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 644 627 .13541 0 4: 4 0 TATTTTTATATGTTGGTT 2 771 754 .13541 0 4: 4 0 TATTTTTTTGTTTTGTTT 3 791 774 .13541 0 4: 4 0 AATTTTTAACTTTTGTGT 4 2539 2522 .01331 0 3: 3 0 GATTTCTAAATTTATTTA 5 5235 5218 .13541 0 4: 4 0 TATTATTAATTTGAATTT 6 5985 5968 .13541 0 4: 4 0 TATTATAAACTTTATTTT 7 6473 6456 .13541 0 4: 4 0 TTTTCTTATTTTAAGTTT NM conservative sequence of ORI of adenovirus (AD) SQ cxnymtmxataatataccyyay CC max mismatch : 5 AI 00000 1 chain 1 sites find / exp.num. .484 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 5842 5863 .48370 0 5: 5 0 AAGTATTAATCATATCCCACAT AI 00000 2 chain 1 sites find / exp.num. .484 interval 2 TD 1 3835 3814 .06380 0 4: 4 0 CTTTCCCTTTAATATAATCTAT NM sequence repeated nontandemly several times in the origin of t SQ gcctc AI 00000 2 chain 5 sites find / exp.num. 6.827 interval 11 TH num begin end exp.num. dist. mismatch site sequence TD 1 214 210 6.82715 0 0: 0 0 GCCTC 2 250 246 6.82715 0 0: 0 0 GCCTC 3 3452 3448 6.82715 0 0: 0 0 GCCTC 4 6795 6791 6.82715 0 0: 0 0 GCCTC 5 6831 6827 6.82715 0 0: 0 0 GCCTC NM consensus sequence of the cores of autonomously replicating SQ xaaayataaax CC max mismatch : 1 AI 00000 1 chain 15 sites find / exp.num. .373 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 631 641 .37304 0 1: 1 0 AACATATAAAA 2 637 647 .37304 0 1: 1 0 TAAAAATAAAA 3 639 649 .37304 0 1: 1 0 AAAATAAAAAA 4 693 703 .37304 0 1: 1 0 AAAACAAAAAA 5 758 768 .37304 0 1: 1 0 AAAACAAAAAA 6 764 774 .37304 0 1: 1 0 AAAAAATAAAA 7 771 781 .37304 0 1: 1 0 AAAACACAAAA 8 1445 1455 .37304 0 1: 1 0 AAAACACAAAA 9 1744 1754 .37304 0 1: 1 0 TACATATAAAA 10 2039 2049 .37304 0 1: 1 0 AATACATAAAA 11 6165 6175 .37304 0 1: 1 0 AAAATAAAAAT 12 6210 6220 .37304 0 1: 1 0 AAAATAGAAAT 13 6223 6233 .37304 0 1: 1 0 ATAATATAAAT 14 6300 6310 .37304 0 1: 1 0 AAAATAAAAAT 15 6455 6465 .37304 0 1: 1 0 AAAACTTAAAA AI 00000 2 chain 3 sites find / exp.num. .373 interval 2 TD 1 1242 1232 .37304 0 1: 1 0 TGAATATAAAT 2 4130 4120 .37304 0 1: 1 0 TCAATATAAAT 3 4523 4513 .37304 0 1: 1 0 TAAATATCAAT NM Promotor of RNA polymerase 1 (mouse, rat) SQ atcttt-tattg AI 00000 2 chain 2 sites find / exp.num. .126 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 2753 2724 .12625 19 1: 1 0 TTCTTTggtacgacccaagtaggacTATTG 2 6376 6350 .12625 16 1: 1 0 ATCATTtgtatgtaaagtgtaaTATTG NM Consensus sequence of promotor genes for RNA polymerase 2 of a SQ ggycaatct-xtataxa CC distance between two blocks of site: min = 35 max = 60 CC max mismatch in 1-st block: 2, in 2-nd block: 0 AI 00000 1 chain 1 sites find / exp.num. .101 interval 0 TH num begin end exp.num. dist. mismatch site sequence TD 1 1682 1753 .10139 56 2: 2 0 GCCCAATTTccccaaacaacgcattttagaggaaatacataccctcgactacaacaaccctctacATATAAA NM consensus sequence near the 3'-ends of the adenovirus 2 genes SQ gggttg AI 00000 2 chain 5 sites find / exp.num. 1.707 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 1513 1508 1.70654 0 0: 0 0 GGGTTG 2 1584 1579 1.70654 0 0: 0 0 GGGTTG 3 1642 1637 1.70654 0 0: 0 0 GGGTTG 4 1741 1736 1.70654 0 0: 0 0 GGGTTG 5 4445 4440 1.70654 0 0: 0 0 GGGTTG NM consensus sequence near the 3'-ends of the adenovirus 2 genes SQ gggttttg AI 00000 2 chain 1 sites find / exp.num. .107 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 3390 3383 .10663 0 0: 0 0 GGGTTTTG NM consensus sequence near the 3'-ends of the adenovirus 2 genes SQ ttgggg AI 00000 2 chain 3 sites find / exp.num. 1.707 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 1696 1691 1.70654 0 0: 0 0 TTGGGG 2 2617 2612 1.70654 0 0: 0 0 TTGGGG 3 5752 5747 1.70654 0 0: 0 0 TTGGGG NM one of two suggested consensus sequences for RNA-polymerase I SQ ggttgg AI 00000 2 chain 7 sites find / exp.num. 1.707 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 1512 1507 1.70654 0 0: 0 0 GGTTGG 2 1521 1516 1.70654 0 0: 0 0 GGTTGG 3 1622 1617 1.70654 0 0: 0 0 GGTTGG 4 1866 1861 1.70654 0 0: 0 0 GGTTGG 5 4444 4439 1.70654 0 0: 0 0 GGTTGG 6 5040 5035 1.70654 0 0: 0 0 GGTTGG 7 5247 5242 1.70654 0 0: 0 0 GGTTGG NM consensus sequence of human mitochondrial promoters SQ canaccccaaagaya CC max mismatch : 3 AI 00000 1 chain 1 sites find / exp.num. .479 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 2820 2834 .47883 0 3: 3 0 CATACCTGACAGATA NM consensus of the TATA-box of Dictyostelium promoters SQ tataaaxa CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. .213 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 635 642 .21326 0 0: 0 0 TATAAAAA 2 1748 1755 .21326 0 0: 0 0 TATAAAAA AI 00000 2 chain 2 sites find / exp.num. .213 interval 1 TD 1 1238 1231 .21326 0 0: 0 0 TATAAATA 2 5404 5397 .21326 0 0: 0 0 TATAAAAA NM "Goldberg-Hogness box";consensus sequence belonging to eukar SQ tataxax CC max mismatch : 0 AI 00000 1 chain 3 sites find / exp.num. 1.706 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 635 641 1.70630 0 0: 0 0 TATAAAA 2 1748 1754 1.70630 0 0: 0 0 TATAAAA 3 6227 6233 1.70630 0 0: 0 0 TATAAAT AI 00000 2 chain 4 sites find / exp.num. 1.706 interval 4 TD 1 486 480 1.70630 0 0: 0 0 TATAAAA 2 1238 1232 1.70630 0 0: 0 0 TATAAAT 3 4126 4120 1.70630 0 0: 0 0 TATAAAT 4 5404 5398 1.70630 0 0: 0 0 TATAAAA NM consensus sequence of a tentative transcription initiation SQ aagtta CC max mismatch : 0 AI 00000 1 chain 6 sites find / exp.num. 1.707 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 472 477 1.70654 0 0: 0 0 AAGTTA 2 780 785 1.70654 0 0: 0 0 AAGTTA 3 1489 1494 1.70654 0 0: 0 0 AAGTTA 4 2506 2511 1.70654 0 0: 0 0 AAGTTA 5 3272 3277 1.70654 0 0: 0 0 AAGTTA 6 3769 3774 1.70654 0 0: 0 0 AAGTTA AI 00000 2 chain 5 sites find / exp.num. 1.707 interval 4 TD 1 1764 1759 1.70654 0 0: 0 0 AAGTTA 2 3224 3219 1.70654 0 0: 0 0 AAGTTA 3 3548 3543 1.70654 0 0: 0 0 AAGTTA 4 3752 3747 1.70654 0 0: 0 0 AAGTTA 5 6114 6109 1.70654 0 0: 0 0 AAGTTA NM Sequence located at the 3'-ends of yeast genes,presumably SQ tttttata CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .107 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 5397 5404 .10663 0 0: 0 0 TTTTTATA AI 00000 2 chain 2 sites find / exp.num. .107 interval 1 TD 1 642 635 .10663 0 0: 0 0 TTTTTATA 2 1755 1748 .10663 0 0: 0 0 TTTTTATA NM Preferential site of transcription termination in yeast gene SQ caaqctttg AI 00000 2 chain 1 sites find / exp.num. .053 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 3163 3155 .05331 0 0: 0 0 CAAGCTTTG NM Consensus of a presumed polyadenylation signal in Trypanosom SQ aaaattyt CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. .213 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 786 793 .21326 0 0: 0 0 AAAATTTT 2 2007 2014 .21326 0 0: 0 0 AAAATTTT AI 00000 2 chain 3 sites find / exp.num. .213 interval 1 TD 1 669 662 .21326 0 0: 0 0 AAAATTCT 2 793 786 .21326 0 0: 0 0 AAAATTTT 3 2014 2007 .21326 0 0: 0 0 AAAATTTT NM Consensus mRNA cap site in Drosophila Cell 29,1027 (Gnomic) SQ yatcxgq CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. 3.413 interval 7 TH num begin end exp.num. dist. mismatch site sequence TD 1 3085 3091 3.41260 0 0: 0 0 TATCTGG 2 4503 4509 3.41260 0 0: 0 0 CATCAGT AI 00000 2 chain 5 sites find / exp.num. 3.413 interval 7 TD 1 1273 1267 3.41260 0 0: 0 0 TATCAGT 2 2834 2828 3.41260 0 0: 0 0 TATCTGT 3 3250 3244 3.41260 0 0: 0 0 CATCAGG 4 3538 3532 3.41260 0 0: 0 0 CATCTGT 5 5285 5279 3.41260 0 0: 0 0 TATCTGT NM "Cap box";one of a number of homology blocks at the 5'-ends SQ ycattcr CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. 1.706 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 875 881 1.70630 0 0: 0 0 CCATTCA 2 2135 2141 1.70630 0 0: 0 0 CCATTCA AI 00000 2 chain 1 sites find / exp.num. 1.706 interval 4 TD 1 466 460 1.70630 0 0: 0 0 CCATTCG NM Consensus of a presumed transcription processing signal of m SQ ataatattctt CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .057 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 3044 3054 .05662 0 1: 1 0 ATAATATCCTT NM Brunch : PNAS (1984) V 81 N 23 P 7417 H SQ uacuaac CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .427 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 1756 1762 .42657 0 0: 0 0 TACTAAC NM Site of splising of plants 3'-end: NAR (1986) V 14 N 24 P 95 SQ tttkttkkkktgcagg CC max mismatch : 2 AI 00000 1 chain 1 sites find / exp.num. .232 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1229 1244 .23173 0 2: 2 0 CTTATTTATATTCAGG NM Conservative blocks in selfsplising introns 1 group B SQ aatcagcagg CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .207 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 2488 2497 .20653 0 1: 1 0 AATCAGGAGG NM DECAMER FROM IMMUNOGLOBULIN GENES SQ AtGCAAAtna CC max mismatch : 1 AI 00000 1 chain 4 sites find / exp.num. .266 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 3167 3176 .26649 0 1: 1 0 ATGCAAATTT 2 5010 5019 .26649 0 1: 1 0 AGGCAAATTA 3 5616 5625 .26649 0 1: 1 0 ATGCAAAAAA 4 6206 6215 .26649 0 1: 1 0 ATGCAAAATA AI 00000 2 chain 2 sites find / exp.num. .266 interval 1 TD 1 272 263 .26649 0 1: 1 0 ATGCAAATTG 2 6853 6844 .26649 0 1: 1 0 ATGCAAATTG NM Mol.Cel.Biol. v62 n8 p1925 E2-PROTEINE OF PAPILLOMPAVIRUS SQ acc-ggt CC distance between two blocks of site: min = 6 max = 6 CC max mismatch in 1-st block: 0, in 2-nd block: 0 AI 00000 1 chain 1 sites find / exp.num. 1.705 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 3241 3252 1.70508 6 0: 0 0 ACCcctgatGGT AI 00000 2 chain 1 sites find / exp.num. 1.705 interval 4 TD 1 3252 3241 1.70508 6 0: 0 0 ACCatcaggGGT NM PNAS v84 n5 p1272 H21.3.5 PROTEIN BINDING SITE IN c-FOS ENHAN SQ cccgtc CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. 1.707 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 849 854 1.70654 0 0: 0 0 CCCGTC AI 00000 2 chain 3 sites find / exp.num. 1.707 interval 4 TD 1 376 371 1.70654 0 0: 0 0 CCCGTC 2 4966 4961 1.70654 0 0: 0 0 CCCGTC 3 6957 6952 1.70654 0 0: 0 0 CCCGTC NM LVa MOTIF MoMuLV ENHANCER (Mol Cell Biol v7 n3 p1101) SQ gaacag CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. 1.707 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 5050 5055 1.70654 0 0: 0 0 GAACAG 2 5783 5788 1.70654 0 0: 0 0 GAACAG AI 00000 2 chain 1 sites find / exp.num. 1.707 interval 4 TD 1 5208 5203 1.70654 0 0: 0 0 GAACAG NM LVc MOTIF MoMuLV ENHANCER (Mol Cell Biol v7 n3 p1101) SQ cctgc CC max mismatch : 0 AI 00000 1 chain 3 sites find / exp.num. 6.827 interval 11 TH num begin end exp.num. dist. mismatch site sequence TD 1 149 153 6.82715 0 0: 0 0 CCTGC 2 4873 4877 6.82715 0 0: 0 0 CCTGC 3 6730 6734 6.82715 0 0: 0 0 CCTGC NM LYSOZYME SILENCER 4 (EMBO j v6 n8 p2298) SQ atnnAgtaaaa AI 00000 2 chain 1 sites find / exp.num. .027 interval 0 TH num begin end exp.num. dist. mismatch site sequence TD 1 4095 4085 .02665 0 0: 0 0 ATCGAGTAAAA NM Enchanser region of virus MSV SQ tctgtggtaaag AI 00000 2 chain 1 sites find / exp.num. .263 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 3536 3525 .26267 0 2: 2 0 TCTGTGGTTAAA NM Conservative elements of Ig enchanser (E1,E2,E3,E4,OCTA) SQ agcagctggc AI 00000 2 chain 1 sites find / exp.num. .207 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 3403 3394 .20653 0 1: 1 0 AGCAGCTGGT NM Conservative elements of Ig enchanser (B,E1,E2,E3) SQ gccatctggc CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .207 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 2997 3006 .20653 0 1: 1 0 GCCATTTGGC NM enhancer core SV40 SQ tGTGgxxx AI 00000 2 chain 3 sites find / exp.num. .853 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 3534 3527 .85303 0 0: 0 0 TGTGGTTA 2 4044 4037 .85303 0 0: 0 0 TGTGGTAA 3 5649 5642 .85303 0 0: 0 0 TGTGGTTA NM PNAS v82 n24 p8325 H21.2.3. Adenovirus E1a core SQ aggaagtgaaa CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .057 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 574 584 .05662 0 1: 1 0 TGGAAGTGAAA NM Mol.Cel.Biol. v5 n4 p649 H21.3.3 SQ ccaccca CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .427 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 1583 1589 .42657 0 0: 0 0 CCACCCA AI 00000 2 chain 2 sites find / exp.num. .427 interval 2 TD 1 18 12 .42657 0 0: 0 0 CCACCCA 2 6599 6593 .42657 0 0: 0 0 CCACCCA NM Consensus enchanser region of virus SV40 SQ rrtgtggxxx AI 00000 2 chain 1 sites find / exp.num. .213 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 5651 5642 .21320 0 0: 0 0 GGTGTGGTTA NM Domen D1 of enchanser of virus AD SQ aggaagtgama CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .107 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 574 584 .10658 0 1: 1 0 TGGAAGTGAAA NM Conservative elements of Ig enchanser (E1,E2,E3,E4,OCTA) SQ atttgcat CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. .107 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 265 272 .10663 0 0: 0 0 ATTTGCAT 2 6846 6853 .10663 0 0: 0 0 ATTTGCAT AI 00000 2 chain 1 sites find / exp.num. .107 interval 1 TD 1 3174 3167 .10663 0 0: 0 0 ATTTGCAT NM Conservative elements of Ig enchanser (B,E1,E2,E3) SQ cccatgtggt CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .207 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1586 1595 .20653 0 1: 1 0 CCCATGTGGC NM NF1-FACtOR SQ tgg-gccaa CC distance between two blocks of site: min = 6 max = 7 CC max mismatch in 1-st block: 0, in 2-nd block: 0 AI 00000 1 chain 1 sites find / exp.num. .213 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 2870 2883 .21306 6 0: 0 0 TGGgtaaatGCCAA NM NFY SQ ccaat CC max mismatch : 0 AI 00000 1 chain 18 sites find / exp.num. 6.827 interval 11 TH num begin end exp.num. dist. mismatch site sequence TD 1 262 266 6.82715 0 0: 0 0 CCAAT 2 550 554 6.82715 0 0: 0 0 CCAAT 3 563 567 6.82715 0 0: 0 0 CCAAT 4 812 816 6.82715 0 0: 0 0 CCAAT 5 1216 1220 6.82715 0 0: 0 0 CCAAT 6 1283 1287 6.82715 0 0: 0 0 CCAAT 7 1621 1625 6.82715 0 0: 0 0 CCAAT 8 1684 1688 6.82715 0 0: 0 0 CCAAT 9 2614 2618 6.82715 0 0: 0 0 CCAAT 10 2836 2840 6.82715 0 0: 0 0 CCAAT 11 2880 2884 6.82715 0 0: 0 0 CCAAT 12 3295 3299 6.82715 0 0: 0 0 CCAAT 13 3487 3491 6.82715 0 0: 0 0 CCAAT 14 3804 3808 6.82715 0 0: 0 0 CCAAT 15 3952 3956 6.82715 0 0: 0 0 CCAAT 16 6019 6023 6.82715 0 0: 0 0 CCAAT 17 6042 6046 6.82715 0 0: 0 0 CCAAT 18 6843 6847 6.82715 0 0: 0 0 CCAAT AI 00000 2 chain 3 sites find / exp.num. 6.827 interval 11 TD 1 1048 1044 6.82715 0 0: 0 0 CCAAT 2 2282 2278 6.82715 0 0: 0 0 CCAAT 3 4566 4562 6.82715 0 0: 0 0 CCAAT NM CRF FACTOR(CCAAT-BOX BINDING FACTOR) SQ tnnnCCatnnC CC max mismatch : 0 AI 00000 1 chain 3 sites find / exp.num. 1.705 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 72 82 1.70532 0 0: 0 0 TTTTCCATAAC 2 1305 1315 1.70532 0 0: 0 0 TAGCCCATCAC 3 6653 6663 1.70532 0 0: 0 0 TTTTCCATAAC AI 00000 2 chain 1 sites find / exp.num. 1.705 interval 4 TD 1 2936 2926 1.70532 0 0: 0 0 TCGTCCATTTC NM ADENOVIRUS EPF FACtOR SQ atgacgt CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .427 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 4052 4058 .42657 0 0: 0 0 ATGACGT NM E4F1 PROTEIN OF ADENOVIRUS SQ aCGTMAc AI 00000 2 chain 2 sites find / exp.num. .853 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 8 2 .85315 0 0: 0 0 ACGTCAC 2 6589 6583 .85315 0 0: 0 0 ACGTCAC NM LARGE T PROTEIN OF PAPILLOMA VIRUS SQ xgrggc CC max mismatch : 0 AI 00000 1 chain 3 sites find / exp.num. 6.826 interval 11 TH num begin end exp.num. dist. mismatch site sequence TD 1 245 250 6.82617 0 0: 0 0 TGAGGC 2 3447 3452 6.82617 0 0: 0 0 AGAGGC 3 6826 6831 6.82617 0 0: 0 0 TGAGGC NM RPG FACTOR SQ tgg-cca CC distance between two blocks of site: min = 7 max = 7 CC max mismatch in 1-st block: 0, in 2-nd block: 0 AI 00000 1 chain 3 sites find / exp.num. 1.705 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 1206 1218 1.70483 7 0: 0 0 TGGaaggtaaCCA 2 2870 2882 1.70483 7 0: 0 0 TGGgtaaatgCCA 3 3249 3261 1.70483 7 0: 0 0 TGGtattaaaCCA AI 00000 2 chain 3 sites find / exp.num. 1.705 interval 4 TD 1 1218 1206 1.70483 7 0: 0 0 TGGttaccttCCA 2 2882 2870 1.70483 7 0: 0 0 TGGcatttacCCA 3 3261 3249 1.70483 7 0: 0 0 TGGtttaataCCA NM Consensus sequence for cAMP receptor protein (CRP or CAP) SQ aantgtganntnnnnca CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .206 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 3193 3209 .20633 0 1: 1 0 AAATGTGAGTTCTTAAA NM Consensus sequence around position -70 to -80 from the sites SQ ggycaatct AI 00000 2 chain 1 sites find / exp.num. .053 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1050 1042 .05331 0 0: 0 0 GGCCAATCT NM Consensus sequence of several adenoviral promoters located at SQ gyrgytttc CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .213 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 5720 5728 .21323 0 0: 0 0 GCAGCTTTC NM Site of initiation of translation in genes of animals SQ zaannatgg CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. .853 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 2843 2851 .85291 0 0: 0 0 CAAATATGG 2 3775 3783 .85291 0 0: 0 0 GAAAGATGG AI 00000 2 chain 2 sites find / exp.num. .853 interval 3 TD 1 1649 1641 .85291 0 0: 0 0 GAATAATGG 2 5658 5650 .85291 0 0: 0 0 CAATGATGG NM HEAt-SHOSK RESPONSIVE ELEMENT SQ ttcnngaa CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. 1.706 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 518 525 1.70605 0 0: 0 0 TTCGTGAA 2 2025 2032 1.70605 0 0: 0 0 TTCCGGAA AI 00000 2 chain 2 sites find / exp.num. 1.706 interval 4 TD 1 525 518 1.70605 0 0: 0 0 TTCACGAA 2 2032 2025 1.70605 0 0: 0 0 TTCCGGAA NM heat-shock HSP70 SQ ctcgaatgTTcgcgaaa AI 00000 2 chain 1 sites find / exp.num. .347 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 2655 2639 .34675 0 5: 5 0 TTCGTGTGTTTGCGCAA NM HEAVY METALL RESPONSIVE ELEMENT SQ tgCrcyc CC max mismatch : 0 AI 00000 1 chain 4 sites find / exp.num. 1.706 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 59 65 1.70630 0 0: 0 0 TGCACTC 2 3015 3021 1.70630 0 0: 0 0 TGCACCC 3 5381 5387 1.70630 0 0: 0 0 TGCACCC 4 6640 6646 1.70630 0 0: 0 0 TGCACTC NM GLUCOCORTICOID RESPONSIVE ELEMENT SQ gnnjCj-tGttCt AI 00000 2 chain 1 sites find / exp.num. .180 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 5063 5049 .17976 3 0: 0 0 GGGTCTgtcTGTTCT NM Consensus sequence of the recognition sites for the glucocorti SQ tgttct AI 00000 2 chain 6 sites find / exp.num. 1.707 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 1377 1372 1.70654 0 0: 0 0 TGTTCT 2 3128 3123 1.70654 0 0: 0 0 TGTTCT 3 3606 3601 1.70654 0 0: 0 0 TGTTCT 4 4406 4401 1.70654 0 0: 0 0 TGTTCT 5 5054 5049 1.70654 0 0: 0 0 TGTTCT 6 6351 6346 1.70654 0 0: 0 0 TGTTCT NM ACUTE REACTANT RESPONSIVE ELEMENT SQ xtZtgGgAx AI 00000 2 chain 1 sites find / exp.num. .213 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 5863 5855 .21323 0 0: 0 0 ATGTGGGAT NM Site of induction J-strand of Ig genes M SQ tcatttgcac AI 00000 2 chain 1 sites find / exp.num. .207 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 2777 2768 .20653 0 1: 1 0 TTATTTGCAC NM MUSCUL-SPECIFIC FACTOR SQ axxtatncat CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .107 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 4477 4486 .10660 0 0: 0 0 ATTTATTCAT NM CCCAC-BOX BINDING FACTOR SQ cccac CC max mismatch : 0 AI 00000 1 chain 5 sites find / exp.num. 6.827 interval 11 TH num begin end exp.num. dist. mismatch site sequence TD 1 1582 1586 6.82715 0 0: 0 0 CCCAC 2 1633 1637 6.82715 0 0: 0 0 CCCAC 3 2634 2638 6.82715 0 0: 0 0 CCCAC 4 5857 5861 6.82715 0 0: 0 0 CCCAC 5 6525 6529 6.82715 0 0: 0 0 CCCAC AI 00000 2 chain 1 sites find / exp.num. 6.827 interval 11 TD 1 5479 5475 6.82715 0 0: 0 0 CCCAC NM MHC Y-BOX SQ tqCtgattGGytmm AI 00000 2 chain 1 sites find / exp.num. .127 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1225 1212 .12693 0 2: 2 0 ATCCGATTGGTTAC NM NF-GMB PROTEIN FOR CYTOKIN 2 SPECIFIC SEQUENCE SQ tyaggrta CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .427 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 1240 1247 .42651 0 0: 0 0 TCAGGGTA NM RIBOSOMAL PROTEIN SPECIFIC MOTIF (JBC v263 n33 p17772) SQ cttccg CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. 1.707 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 1028 1033 1.70654 0 0: 0 0 CTTCCG NM cycle histone MCB 85 5 2 380 389 SQ GAYTTC CC max mismatch : 0 AI 00000 1 chain 3 sites find / exp.num. 3.413 interval 7 TH num begin end exp.num. dist. mismatch site sequence TD 1 1026 1031 3.41309 0 0: 0 0 GACTTC 2 2912 2917 3.41309 0 0: 0 0 GATTTC 3 6338 6343 3.41309 0 0: 0 0 GATTTC AI 00000 2 chain 9 sites find / exp.num. 3.413 interval 7 TD 1 53 48 3.41309 0 0: 0 0 GATTTC 2 2539 2534 3.41309 0 0: 0 0 GATTTC 3 2658 2653 3.41309 0 0: 0 0 GATTTC 4 4152 4147 3.41309 0 0: 0 0 GATTTC 5 4257 4252 3.41309 0 0: 0 0 GATTTC 6 4692 4687 3.41309 0 0: 0 0 GACTTC 7 5552 5547 3.41309 0 0: 0 0 GATTTC 8 6221 6216 3.41309 0 0: 0 0 GATTTC 9 6634 6629 3.41309 0 0: 0 0 GATTTC NM cycle cell 86 45 4 537 544 trt1 SQ GCGAAA AI 00000 2 chain 1 sites find / exp.num. 1.707 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 938 933 1.70654 0 0: 0 0 GCGAAA NM Regulated element of gene LSP of D.melanogaster EMBO J (1985) V 4 N P 3789 H SQ aaaytaaagctggt CC max mismatch : 3 AI 00000 1 chain 1 sites find / exp.num. .479 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 1196 1209 .47890 0 3: 3 0 AAACTACACCTGGA AI 00000 2 chain 1 sites find / exp.num. .479 interval 2 TD 1 4885 4872 .47890 0 3: 3 0 AAATTTGAGCAGGT NM Regulating element of promotor of contractive(KONTRAKTILNIY) SQ cattcct AI 00000 2 chain 1 sites find / exp.num. .427 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 3016 3010 .42657 0 0: 0 0 CATTCCT NM Regulating element of myofibrilative proteins SQ gcccgannnncaaatat CC max mismatch : 2 AI 00000 1 chain 2 sites find / exp.num. .077 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 217 233 .00416 0 1: 1 0 TCCCGAAATACAAATAT 2 6798 6814 .00416 0 1: 1 0 TCCCGAAATACAAATAT NM Sequence repeated 5 times in the promoter of the mouse SQ gaaga CC max mismatch : 0 AI 00000 1 chain 14 sites find / exp.num. 6.827 interval 11 TH num begin end exp.num. dist. mismatch site sequence TD 1 1040 1044 6.82715 0 0: 0 0 GAAGA 2 1160 1164 6.82715 0 0: 0 0 GAAGA 3 1370 1374 6.82715 0 0: 0 0 GAAGA 4 2935 2939 6.82715 0 0: 0 0 GAAGA 5 3874 3878 6.82715 0 0: 0 0 GAAGA 6 3913 3917 6.82715 0 0: 0 0 GAAGA 7 4678 4682 6.82715 0 0: 0 0 GAAGA 8 4681 4685 6.82715 0 0: 0 0 GAAGA 9 4684 4688 6.82715 0 0: 0 0 GAAGA 10 4792 4796 6.82715 0 0: 0 0 GAAGA 11 4932 4936 6.82715 0 0: 0 0 GAAGA 12 4954 4958 6.82715 0 0: 0 0 GAAGA 13 5700 5704 6.82715 0 0: 0 0 GAAGA 14 6510 6514 6.82715 0 0: 0 0 GAAGA AI 00000 2 chain 2 sites find / exp.num. 6.827 interval 11 TD 1 533 529 6.82715 0 0: 0 0 GAAGA 2 2134 2130 6.82715 0 0: 0 0 GAAGA NM Consensus pd sequense essential for correct transcription of SQ tgcazctgtgnccag AI 00000 2 chain 3 sites find / exp.num. .479 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 2097 2083 .47883 0 3: 3 0 TGATCCTGTGTCTAG 2 3040 3026 .47883 0 3: 3 0 TGCACCTTTGAAAAG 3 5207 5193 .47883 0 3: 3 0 AACAGCTGTGATCAG NM Consensus sequence of repeated hexanucleotides within the 5'- SQ aarqga CC max mismatch : 0 AI 00000 1 chain 22 sites find / exp.num. 6.826 interval 11 TH num begin end exp.num. dist. mismatch site sequence TD 1 577 582 6.82617 0 0: 0 0 AAGTGA 2 710 715 6.82617 0 0: 0 0 AAGTGA 3 949 954 6.82617 0 0: 0 0 AAATGA 4 990 995 6.82617 0 0: 0 0 AAAGGA 5 1354 1359 6.82617 0 0: 0 0 AAATGA 6 2325 2330 6.82617 0 0: 0 0 AAATGA 7 2405 2410 6.82617 0 0: 0 0 AAAGGA 8 2808 2813 6.82617 0 0: 0 0 AAATGA 9 2908 2913 6.82617 0 0: 0 0 AAGGGA 10 3210 3215 6.82617 0 0: 0 0 AAAGGA 11 3410 3415 6.82617 0 0: 0 0 AAAGGA 12 3753 3758 6.82617 0 0: 0 0 AAAGGA 13 3827 3832 6.82617 0 0: 0 0 AAGGGA 14 4301 4306 6.82617 0 0: 0 0 AAATGA 15 4755 4760 6.82617 0 0: 0 0 AAATGA 16 4950 4955 6.82617 0 0: 0 0 AAATGA 17 5516 5521 6.82617 0 0: 0 0 AAATGA 18 5606 5611 6.82617 0 0: 0 0 AAATGA 19 6005 6010 6.82617 0 0: 0 0 AAATGA 20 6187 6192 6.82617 0 0: 0 0 AAATGA 21 6370 6375 6.82617 0 0: 0 0 AAATGA 22 6571 6576 6.82617 0 0: 0 0 AAGGGA AI 00000 2 chain 9 sites find / exp.num. 6.826 interval 11 TD 1 1662 1657 6.82617 0 0: 0 0 AAATGA 2 3120 3115 6.82617 0 0: 0 0 AAGGGA 3 3568 3563 6.82617 0 0: 0 0 AAAGGA 4 3941 3936 6.82617 0 0: 0 0 AAATGA 5 4100 4095 6.82617 0 0: 0 0 AAGTGA 6 4331 4326 6.82617 0 0: 0 0 AAGTGA 7 5262 5257 6.82617 0 0: 0 0 AAAGGA 8 5297 5292 6.82617 0 0: 0 0 AAAGGA 9 6431 6426 6.82617 0 0: 0 0 AAATGA NM Consensus of a sequence found downstream from the cap site of SQ gcttctgr CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .213 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 2761 2768 .21326 0 0: 0 0 GCTTCTGG NM Sequence frequently found in the promoter region of histone H SQ cgcac CC max mismatch : 0 AI 00000 1 chain 3 sites find / exp.num. 6.827 interval 11 TH num begin end exp.num. dist. mismatch site sequence TD 1 1597 1601 6.82715 0 0: 0 0 CGCAC 2 5099 5103 6.82715 0 0: 0 0 CGCAC 3 6389 6393 6.82715 0 0: 0 0 CGCAC