ID DMCOPIA DE Drosophila melanogaster transposable element copia NM **** 1.(1) POLIMERASE II SQ tATAaa CC max mismatch : 0 AI 00000 1 chain 11 sites find / exp.num. 1.264 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 217 222 1.26416 0 0: 0 0 TATAAA 2 276 281 1.26416 0 0: 0 0 TATAAA 3 283 288 1.26416 0 0: 0 0 TATAAA 4 1067 1072 1.26416 0 0: 0 0 TATAAA 5 1133 1138 1.26416 0 0: 0 0 TATAAA 6 1193 1198 1.26416 0 0: 0 0 TATAAA 7 1348 1353 1.26416 0 0: 0 0 TATAAA 8 1669 1674 1.26416 0 0: 0 0 TATAAA 9 2012 2017 1.26416 0 0: 0 0 TATAAA 10 5086 5091 1.26416 0 0: 0 0 TATAAA 11 5150 5155 1.26416 0 0: 0 0 TATAAA AI 00000 2 chain 5 sites find / exp.num. 1.264 interval 3 SQ 1 75 70 1.26416 0 0: 0 0 TATAAA 2 3412 3407 1.26416 0 0: 0 0 TATAAA 3 3503 3498 1.26416 0 0: 0 0 TATAAA 4 4691 4686 1.26416 0 0: 0 0 TATAAA 5 4944 4939 1.26416 0 0: 0 0 TATAAA NM **** 2.(1.1) Inr (ripl.POLIMERASE II) SQ NTCAQTY CC max mismatch : 0 AI 00000 1 chain 9 sites find / exp.num. 5.056 interval 9 TH num begin end exp.num. dist. mismatch site sequence TD 1 1974 1980 5.05566 0 0: 0 0 ATCAGTT 2 2064 2070 5.05566 0 0: 0 0 CTCATTT 3 2187 2193 5.05566 0 0: 0 0 CTCAGTT 4 2464 2470 5.05566 0 0: 0 0 ATCATTT 5 3127 3133 5.05566 0 0: 0 0 TTCATTT 6 3643 3649 5.05566 0 0: 0 0 TTCAGTT 7 4283 4289 5.05566 0 0: 0 0 CTCATTT 8 4515 4521 5.05566 0 0: 0 0 ATCATTT 9 4789 4795 5.05566 0 0: 0 0 ATCAGTT AI 00000 2 chain 20 sites find / exp.num. 5.056 interval 9 TD 1 1009 1003 5.05566 0 0: 0 0 GTCATTT 2 1231 1225 5.05566 0 0: 0 0 TTCATTT 3 1357 1351 5.05566 0 0: 0 0 ATCATTT 4 1471 1465 5.05566 0 0: 0 0 GTCATTC 5 2128 2122 5.05566 0 0: 0 0 CTCATTT 6 2217 2211 5.05566 0 0: 0 0 ATCATTC 7 2530 2524 5.05566 0 0: 0 0 TTCATTT 8 2656 2650 5.05566 0 0: 0 0 GTCATTC 9 2692 2686 5.05566 0 0: 0 0 CTCATTC 10 2764 2758 5.05566 0 0: 0 0 GTCATTC 11 2800 2794 5.05566 0 0: 0 0 CTCATTC 12 2869 2863 5.05566 0 0: 0 0 CTCATTC 13 2905 2899 5.05566 0 0: 0 0 TTCATTC 14 2932 2926 5.05566 0 0: 0 0 CTCATTC 15 2998 2992 5.05566 0 0: 0 0 ATCATTT 16 3756 3750 5.05566 0 0: 0 0 TTCATTC 17 3799 3793 5.05566 0 0: 0 0 GTCAGTC 18 3808 3802 5.05566 0 0: 0 0 TTCATTT 19 4336 4330 5.05566 0 0: 0 0 TTCAGTT 20 4682 4676 5.05566 0 0: 0 0 TTCATTC NM **** 4.(9a) n=55;found upstream from the promoter of the pheasant conalbu- SQ ggaaa CC max mismatch : 0 AI 00000 1 chain 17 sites find / exp.num. 5.058 interval 9 TH num begin end exp.num. dist. mismatch site sequence TD 1 271 275 5.05762 0 0: 0 0 GGAAA 2 507 511 5.05762 0 0: 0 0 GGAAA 3 594 598 5.05762 0 0: 0 0 GGAAA 4 1121 1125 5.05762 0 0: 0 0 GGAAA 5 2230 2234 5.05762 0 0: 0 0 GGAAA 6 2447 2451 5.05762 0 0: 0 0 GGAAA 7 2626 2630 5.05762 0 0: 0 0 GGAAA 8 2661 2665 5.05762 0 0: 0 0 GGAAA 9 2734 2738 5.05762 0 0: 0 0 GGAAA 10 2769 2773 5.05762 0 0: 0 0 GGAAA 11 2842 2846 5.05762 0 0: 0 0 GGAAA 12 2938 2942 5.05762 0 0: 0 0 GGAAA 13 3296 3300 5.05762 0 0: 0 0 GGAAA 14 3493 3497 5.05762 0 0: 0 0 GGAAA 15 3778 3782 5.05762 0 0: 0 0 GGAAA 16 3907 3911 5.05762 0 0: 0 0 GGAAA 17 5139 5143 5.05762 0 0: 0 0 GGAAA AI 00000 2 chain 8 sites find / exp.num. 5.058 interval 9 TD 1 152 148 5.05762 0 0: 0 0 GGAAA 2 430 426 5.05762 0 0: 0 0 GGAAA 3 1190 1186 5.05762 0 0: 0 0 GGAAA 4 2649 2645 5.05762 0 0: 0 0 GGAAA 5 2757 2753 5.05762 0 0: 0 0 GGAAA 6 3404 3400 5.05762 0 0: 0 0 GGAAA 7 4764 4760 5.05762 0 0: 0 0 GGAAA 8 5021 5017 5.05762 0 0: 0 0 GGAAA NM **** 6.(5) POLY A SINGLE BLOCK SQ AATAAA CC max mismatch : 0 AI 00000 1 chain 13 sites find / exp.num. 1.264 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 320 325 1.26416 0 0: 0 0 AATAAA 2 355 360 1.26416 0 0: 0 0 AATAAA 3 1211 1216 1.26416 0 0: 0 0 AATAAA 4 1217 1222 1.26416 0 0: 0 0 AATAAA 5 1747 1752 1.26416 0 0: 0 0 AATAAA 6 2636 2641 1.26416 0 0: 0 0 AATAAA 7 2744 2749 1.26416 0 0: 0 0 AATAAA 8 2849 2854 1.26416 0 0: 0 0 AATAAA 9 3080 3085 1.26416 0 0: 0 0 AATAAA 10 3808 3813 1.26416 0 0: 0 0 AATAAA 11 3946 3951 1.26416 0 0: 0 0 AATAAA 12 4187 4192 1.26416 0 0: 0 0 AATAAA 13 5143 5148 1.26416 0 0: 0 0 AATAAA AI 00000 2 chain 12 sites find / exp.num. 1.264 interval 3 TD 1 142 137 1.26416 0 0: 0 0 AATAAA 2 256 251 1.26416 0 0: 0 0 AATAAA 3 260 255 1.26416 0 0: 0 0 AATAAA 4 264 259 1.26416 0 0: 0 0 AATAAA 5 1432 1427 1.26416 0 0: 0 0 AATAAA 6 2539 2534 1.26416 0 0: 0 0 AATAAA 7 3823 3818 1.26416 0 0: 0 0 AATAAA 8 4263 4258 1.26416 0 0: 0 0 AATAAA 9 4395 4390 1.26416 0 0: 0 0 AATAAA 10 5011 5006 1.26416 0 0: 0 0 AATAAA 11 5125 5120 1.26416 0 0: 0 0 AATAAA 12 5129 5124 1.26416 0 0: 0 0 AATAAA NM **** 8.(14b) One of two related variants of a presumed transcription termi SQ tatgt CC max mismatch : 0 AI 00000 1 chain 8 sites find / exp.num. 5.058 interval 9 TH num begin end exp.num. dist. mismatch site sequence TD 1 1627 1631 5.05762 0 0: 0 0 TATGT 2 1762 1766 5.05762 0 0: 0 0 TATGT 3 2423 2427 5.05762 0 0: 0 0 TATGT 4 3698 3702 5.05762 0 0: 0 0 TATGT 5 3710 3714 5.05762 0 0: 0 0 TATGT 6 3875 3879 5.05762 0 0: 0 0 TATGT 7 4202 4206 5.05762 0 0: 0 0 TATGT 8 4853 4857 5.05762 0 0: 0 0 TATGT AI 00000 2 chain 12 sites find / exp.num. 5.058 interval 9 TD 1 115 111 5.05762 0 0: 0 0 TATGT 2 240 236 5.05762 0 0: 0 0 TATGT 3 2183 2179 5.05762 0 0: 0 0 TATGT 4 2713 2709 5.05762 0 0: 0 0 TATGT 5 2821 2817 5.05762 0 0: 0 0 TATGT 6 3697 3693 5.05762 0 0: 0 0 TATGT 7 4024 4020 5.05762 0 0: 0 0 TATGT 8 4502 4498 5.05762 0 0: 0 0 TATGT 9 4594 4590 5.05762 0 0: 0 0 TATGT 10 4724 4720 5.05762 0 0: 0 0 TATGT 11 4984 4980 5.05762 0 0: 0 0 TATGT 12 5109 5105 5.05762 0 0: 0 0 TATGT NM **** 10.(18) ORI HUM SQ taaatttagt AI 00000 2 chain 2 sites find / exp.num. .153 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 3113 3104 .15296 0 1: 1 0 TAAATATAGT 2 3902 3893 .15296 0 1: 1 0 TAAATTTACT NM **** 12.(15) HSV ORI SQ atatatatat CC max mismatch : 1 AI 00000 1 chain 5 sites find / exp.num. .153 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 3657 3666 .15296 0 1: 1 0 GTATATATAT 2 3659 3668 .15296 0 1: 1 0 ATATATATTT 3 3695 3704 .15296 0 1: 1 0 ATATATGTAT 4 4687 4696 .15296 0 1: 1 0 TTATATATAT 5 4689 4698 .15296 0 1: 1 0 ATATATATTT AI 00000 2 chain 5 sites find / exp.num. .153 interval 1 TD 1 3666 3657 .15296 0 1: 1 0 ATATATATAC 2 3668 3659 .15296 0 1: 1 0 AAATATATAT 3 3704 3695 .15296 0 1: 1 0 ATACATATAT 4 4696 4687 .15296 0 1: 1 0 ATATATATAA 5 4698 4689 .15296 0 1: 1 0 AAATATATAT NM **** 13.(19) ARS Y XE DM SQ xtttatrtttx CC max mismatch : 1 AI 00000 1 chain 6 sites find / exp.num. .276 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 803 813 .27627 0 1: 1 0 TTTCATATTTT 2 3406 3416 .27627 0 1: 1 0 ATTTATATTGT 3 3659 3669 .27627 0 1: 1 0 ATATATATTTT 4 4685 4695 .27627 0 1: 1 0 TTTTATATATA 5 4689 4699 .27627 0 1: 1 0 ATATATATTTT 6 4850 4860 .27627 0 1: 1 0 TGTTATGTTTT AI 00000 2 chain 13 sites find / exp.num. .276 interval 1 TD 1 223 213 .00987 0 0: 0 0 ATTTATATTTT 2 230 220 .27627 0 1: 1 0 TTTTATGATTT 3 282 272 .27627 0 1: 1 0 ATTTATATTTC 4 289 279 .27627 0 1: 1 0 ATTTATAATTT 5 1688 1678 .27627 0 1: 1 0 TTTTATGCTTA 6 2018 2008 .00987 0 0: 0 0 ATTTATATTTA 7 2644 2634 .27627 0 1: 1 0 ATTTTTATTTT 8 2752 2742 .27627 0 1: 1 0 ATTTTTATTTT 9 3250 3240 .27627 0 1: 1 0 ATTTTTGTTTT 10 3700 3690 .27627 0 1: 1 0 ATATATGTTTT 11 5092 5082 .00987 0 0: 0 0 ATTTATATTTT 12 5099 5089 .27627 0 1: 1 0 TTTTATGATTT 13 5156 5146 .27627 0 1: 1 0 ATTTATAATTT NM **** 14.(24) ARS yeast, xenopus SQ xttttatrtttx CC max mismatch : 1 AI 00000 1 chain 3 sites find / exp.num. .076 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 802 813 .07645 0 1: 1 0 TTTTCATATTTT 2 4684 4695 .07645 0 1: 1 0 TTTTTATATATA 3 4849 4860 .07645 0 1: 1 0 TTGTTATGTTTT AI 00000 2 chain 1 sites find / exp.num. .076 interval 1 TD 1 1689 1678 .07645 0 1: 1 0 TTTTTATGCTTA NM **** 15.(22) SAR A BOX OF DROSOFILA j mol biol v198 n 4 p677 &cell v46 n4 SQ aataaayaaa CC max mismatch : 1 AI 00000 1 chain 2 sites find / exp.num. .286 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 320 329 .28619 0 1: 1 0 AATAAACAAT 2 1217 1226 .28619 0 1: 1 0 AATAAAGAAA AI 00000 2 chain 4 sites find / exp.num. .286 interval 1 TD 1 260 251 .00987 0 0: 0 0 AATAAATAAA 2 264 255 .00987 0 0: 0 0 AATAAATAAA 3 1436 1427 .28619 0 1: 1 0 CATAAATAAA 4 5129 5120 .00987 0 0: 0 0 AATAAATAAA NM **** 16.(23) SAR T BOX OF DROSOFILA cell v46 n4 p521 SQ TtXTxTTXtt CC max mismatch : 0 AI 00000 1 chain 5 sites find / exp.num. .434 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 133 142 .43422 0 1: 1 0 TCTTTTTATT 2 399 408 .43422 0 1: 1 0 TTTTTTTTTC 3 805 814 .43422 0 1: 1 0 TCATATTTTT 4 4852 4861 .43422 0 1: 1 0 TTATGTTTTT 5 5002 5011 .43422 0 1: 1 0 TCTTTTTATT AI 00000 2 chain 1 sites find / exp.num. .039 interval 0 TD 1 1217 1208 .03947 0 0: 0 0 TTTTATTATT NM **** 17(30). initiation of translation in genes of animals SQ zaannatgg CC max mismatch : 0 AI 00000 1 chain 4 sites find / exp.num. .632 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 447 455 .63171 0 0: 0 0 GAAAAATGG 2 1594 1602 .63171 0 0: 0 0 GAAAAATGG 3 2241 2249 .63171 0 0: 0 0 GAACCATGG 4 4097 4105 .63171 0 0: 0 0 GAATTATGG NM **** 18(32).optimal sequence for initiation of translation by eukaryotik SQ accatgg CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .316 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 2243 2249 .31598 0 0: 0 0 ACCATGG AI 00000 2 chain 1 sites find / exp.num. .316 interval 1 TD 1 2250 2244 .31598 0 0: 0 0 ACCATGG NM **** 56(6). POLYMERASE TWO BLOCKS III (NAR V12 N19 p7377) SQ rrynnarygg-gxtcrannc CC distance between two blocks of site: min = 31 max = 41 CC max mismatch in 1-st block: 0, in 2-nd block: 1 AI 00000 1 chain 1 sites find / exp.num. .121 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 2190 2245 .12106 37 1: 0 1 AGTTAAATGGtgtttctgagagaatgataagaaccattacggaaaaaGCTCGAACC NM **** 60(11). INTRON-EXON JUNCTION SQ yyyyynyAGG AI 00000 2 chain 4 sites find / exp.num. 1.263 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 50 41 1.26318 0 0: 0 0 TTTTTGTAGG 2 600 591 1.26318 0 0: 0 0 TTTTTCCAGG 3 4577 4568 1.26318 0 0: 0 0 TCTCTGTAGG 4 4919 4910 1.26318 0 0: 0 0 TTTTTGTAGG NM **** 61(12). lar+3' SQ YTaAT-yyyyaG CC distance between two blocks of site: min = 16 max = 36 CC max mismatch in 1-st block: 0, in 2-nd block: 0 AI 00000 1 chain 1 sites find / exp.num. .825 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 3012 3049 .82464 27 0: 0 0 TTAATagaagaagtgagagattaaagactaagCCTCAG 00000 2 chain 4 sites find / exp.num. .825 interval 3 1 797 767 .82464 20 0: 0 0 TTAATagtgacatctcactcgatagCTTCAG 2 3015 2988 .82464 17 0: 0 0 TTAATaatttctatgccatcatTTTTAG 3 3422 3387 .82464 25 0: 0 0 CTAATgacaatataaatcggaaacttgaaaTTCTAG 4 4461 4415 .82464 36 0: 0 0 CTAATacagccttgattgtcttcgtaaattttaatggggttTTCTAG NM **** 64(17). ORI MT !!! SQ trtgytytr AI 00000 2 chain 2 sites find / exp.num. .316 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 115 107 .31586 0 0: 0 0 TATGTTTTA 2 4984 4976 .31586 0 0: 0 0 TATGTTTTA NM **** 67(26).ARS-fragment of chlamydomonada SQ raattttaaat CC max mismatch : 1 AI 00000 1 chain 4 sites find / exp.num. .079 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 279 289 .07893 0 1: 1 0 AAATTATAAAT 2 1200 1210 .07893 0 1: 1 0 GAATATTAAAT 3 3885 3895 .07893 0 1: 1 0 AAATTTTAAGT 4 5146 5156 .07893 0 1: 1 0 AAATTATAAAT NM **** 69(28).ARS of human SQ tattyytaaatttagtxt CC max mismatch : 4 AI 00000 1 chain 2 sites find / exp.num. .100 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 502 519 .10025 0 4: 4 0 GATTTGGAAATTTAGAAT 2 4682 4699 .10025 0 4: 4 0 AATTTTTATATATATTTT AI 00000 2 chain 5 sites find / exp.num. .100 interval 1 TD 1 370 353 .00986 0 3: 3 0 TATTTCACAATTTATTTT 2 1007 990 .00986 0 3: 3 0 CATTTTTAATTTTAATTT 3 1691 1674 .10025 0 4: 4 0 TATTTTTATGCTTAGCAT 4 3961 3944 .10025 0 4: 4 0 TAATTCATAATTTATTTT 5 5158 5141 .10025 0 4: 4 0 TAATTTATAATTTATTTT NM **** 70(29).conservative sequence of ORI of adenovirus (AD) SQ cxnymtmxataatataccyyay CC max mismatch : 5 AI 00000 1 chain 2 sites find / exp.num. .358 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 214 235 .35802 0 5: 5 0 AAATATAAATCATAAAACTCAA 2 5083 5104 .35802 0 5: 5 0 AAATATAAATCATAAAACTCAA NM **** 71(31).sequence repeated nontandemly several times in the origin of t SQ gcctc CC max mismatch : 0 AI 00000 1 chain 4 sites find / exp.num. 5.058 interval 9 TH num begin end exp.num. dist. mismatch site sequence TD 1 1390 1394 5.05762 0 0: 0 0 GCCTC 2 3043 3047 5.05762 0 0: 0 0 GCCTC 3 3999 4003 5.05762 0 0: 0 0 GCCTC 4 4322 4326 5.05762 0 0: 0 0 GCCTC AI 00000 2 chain 1 sites find / exp.num. 5.058 interval 9 TD 1 1551 1547 5.05762 0 0: 0 0 GCCTC NM **** 72(33).consensus sequence of the cores of autonomously replicating SQ xaaayataaax CC max mismatch : 1 AI 00000 1 chain 13 sites find / exp.num. .276 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 213 223 .00987 0 0: 0 0 AAAATATAAAT 2 220 230 .27627 0 1: 1 0 AAATCATAAAA 3 272 282 .27627 0 1: 1 0 GAAATATAAAT 4 279 289 .27627 0 1: 1 0 AAATTATAAAT 5 1678 1688 .27627 0 1: 1 0 TAAGCATAAAA 6 2008 2018 .00987 0 0: 0 0 TAAATATAAAT 7 2634 2644 .27627 0 1: 1 0 AAAATAAAAAT 8 2742 2752 .27627 0 1: 1 0 AAAATAAAAAT 9 3240 3250 .27627 0 1: 1 0 AAAACAAAAAT 10 3690 3700 .27627 0 1: 1 0 AAAACATATAT 11 5082 5092 .00987 0 0: 0 0 AAAATATAAAT 12 5089 5099 .27627 0 1: 1 0 AAATCATAAAA 13 5146 5156 .27627 0 1: 1 0 AAATTATAAAT AI 00000 2 chain 6 sites find / exp.num. .276 interval 1 TD 1 813 803 .27627 0 1: 1 0 AAAATATGAAA 2 3416 3406 .27627 0 1: 1 0 ACAATATAAAT 3 3669 3659 .27627 0 1: 1 0 AAAATATATAT 4 4695 4685 .27627 0 1: 1 0 TATATATAAAA 5 4699 4689 .27627 0 1: 1 0 AAAATATATAT 6 4860 4850 .27627 0 1: 1 0 AAAACATAACA NM **** 74(2a).Promotor of RNA polymerase 1 (mouse, rat) SQ atcttt-tattg CC distance between two blocks of site: min = 16 max = 19 CC max mismatch in 1-st block: 1, in 2-nd block: 0 AI 00000 1 chain 1 sites find / exp.num. .093 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1964 1992 .00492 18 0: 0 0 ATCTTTgttgatcagtttacacatTATTG NM **** 80(11a).consensus sequence near the 3'-ends of the adenovirus 2 genes SQ gggttg AI 00000 2 chain 2 sites find / exp.num. 1.264 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 2925 2920 1.26416 0 0: 0 0 GGGTTG 2 4476 4471 1.26416 0 0: 0 0 GGGTTG NM **** 82(13a).consensus sequence near the 3'-ends of the adenovirus 2 genes SQ ttgggg CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. 1.264 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 2278 2283 1.26416 0 0: 0 0 TTGGGG NM **** 83(14a).consensus sequence near the 3'-ends of the adenovirus 2 genes SQ ttttgggg CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .079 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 2276 2283 .07898 0 0: 0 0 TTTTGGGG NM **** 95(26a).Consensus sequence of the RNA polymerase III of genes of tRNA SQ rrynnarygg-gxtcrancc CC distance between two blocks of site: min = 31 max = 74 CC max mismatch in 1-st block: 0, in 2-nd block: 1 AI 00000 1 chain 2 sites find / exp.num. .141 interval 0 TH num begin end exp.num. dist. mismatch site sequence TD 1 2190 2245 .14078 37 1: 0 1 AGTTAAATGGtgtttctgagagaatgataagaaccattacggaaaaaGCTCGAACC 2 2493 2569 .14078 58 1: 0 1 AACCCAATGGttttaagttgtgggatgctgtaaatgaaaaatttattgtcgcaagagatgttgttgtcGATGAAACC NM **** 97(28a).consensus sequence of human mitochondrial promoters SQ canaccccaaagaya AI 00000 2 chain 1 sites find / exp.num. .355 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 965 951 .35454 0 3: 3 0 CAAACGCCAATGTCA NM **** 100(32a).consensus of the TATA-box of Dictyostelium promoters SQ tataaaxa CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .158 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1067 1074 .15796 0 0: 0 0 TATAAAAA AI 00000 2 chain 1 sites find / exp.num. .158 interval 1 TD 1 4691 4684 .15796 0 0: 0 0 TATAAAAA NM **** 101(33a)."Goldberg-Hogness box";consensus sequence belonging to eukar SQ tataxax CC max mismatch : 0 AI 00000 1 chain 14 sites find / exp.num. 1.264 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 217 223 1.26392 0 0: 0 0 TATAAAT 2 276 282 1.26392 0 0: 0 0 TATAAAT 3 283 289 1.26392 0 0: 0 0 TATAAAT 4 1067 1073 1.26392 0 0: 0 0 TATAAAA 5 1193 1199 1.26392 0 0: 0 0 TATAAAA 6 1348 1354 1.26392 0 0: 0 0 TATAAAT 7 1669 1675 1.26392 0 0: 0 0 TATAAAT 8 2012 2018 1.26392 0 0: 0 0 TATAAAT 9 3658 3664 1.26392 0 0: 0 0 TATATAT 10 3660 3666 1.26392 0 0: 0 0 TATATAT 11 4688 4694 1.26392 0 0: 0 0 TATATAT 12 4690 4696 1.26392 0 0: 0 0 TATATAT 13 5086 5092 1.26392 0 0: 0 0 TATAAAT 14 5150 5156 1.26392 0 0: 0 0 TATAAAT AI 00000 2 chain 6 sites find / exp.num. 1.264 interval 3 TD 1 3412 3406 1.26392 0 0: 0 0 TATAAAT 2 3503 3497 1.26392 0 0: 0 0 TATAAAT 3 3665 3659 1.26392 0 0: 0 0 TATATAT 4 4691 4685 1.26392 0 0: 0 0 TATAAAA 5 4693 4687 1.26392 0 0: 0 0 TATATAA 6 4695 4689 1.26392 0 0: 0 0 TATATAT NM **** 103(36a).consensus sequence of a tentative transcription initiation SQ aagtta CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. 1.264 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 1029 1034 1.26416 0 0: 0 0 AAGTTA AI 00000 2 chain 5 sites find / exp.num. 1.264 interval 3 TD 1 212 207 1.26416 0 0: 0 0 AAGTTA 2 2000 1995 1.26416 0 0: 0 0 AAGTTA 3 3438 3433 1.26416 0 0: 0 0 AAGTTA 4 3762 3757 1.26416 0 0: 0 0 AAGTTA 5 5081 5076 1.26416 0 0: 0 0 AAGTTA NM **** 104(37a).sequence frequently found in the promoter region of histone SQ ccgca AI 00000 2 chain 1 sites find / exp.num. 5.058 interval 9 TH num begin end exp.num. dist. mismatch site sequence TD 1 1314 1310 5.05762 0 0: 0 0 CCGCA NM **** 113(6b).Sequence located at the 3'-ends of yeast genes,presumably SQ tttttata CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .079 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 4684 4691 .07898 0 0: 0 0 TTTTTATA AI 00000 2 chain 1 sites find / exp.num. .079 interval 1 TD 1 1074 1067 .07898 0 0: 0 0 TTTTTATA NM **** 121(16b).Consensus of a presumed polyadenylation signal in Trypanosom SQ aaaattyt CC max mismatch : 0 AI 00000 1 chain 3 sites find / exp.num. .158 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 2640 2647 .15796 0 0: 0 0 AAAATTTT 2 2748 2755 .15796 0 0: 0 0 AAAATTTT 3 3884 3891 .15796 0 0: 0 0 AAAATTTT AI 00000 2 chain 3 sites find / exp.num. .158 interval 1 TD 1 2647 2640 .15796 0 0: 0 0 AAAATTTT 2 2755 2748 .15796 0 0: 0 0 AAAATTTT 3 3891 3884 .15796 0 0: 0 0 AAAATTTT NM **** 124(22b).Signal of formiration 3'-end in mnRNA SQ gttyn-aaarryaga CC distance between two blocks of site: min = 0 max = 3 CC max mismatch in 1-st block: 0, in 2-nd block: 1 AI 00000 1 chain 2 sites find / exp.num. .108 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 961 976 .00493 2 0: 0 0 GTTTGtgAAAAATAGA 2 2608 2623 .10844 2 1: 0 1 GTTCCtgAAAGATAGT NM **** 125(23b).Consensus mRNA cap site in Drosophila Cell 29,1027 (Gnomic) SQ yatcxgq CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. 2.528 interval 5 TH num begin end exp.num. dist. mismatch site sequence TD 1 17 23 2.52783 0 0: 0 0 TATCTGT NM **** 126(24b)."Cap box";one of a number of homology blocks at the 5'-ends SQ ycattcr AI 00000 2 chain 10 sites find / exp.num. 1.264 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 89 83 1.26392 0 0: 0 0 CCATTCA 2 2655 2649 1.26392 0 0: 0 0 TCATTCG 3 2691 2685 1.26392 0 0: 0 0 TCATTCG 4 2763 2757 1.26392 0 0: 0 0 TCATTCG 5 2799 2793 1.26392 0 0: 0 0 TCATTCG 6 2868 2862 1.26392 0 0: 0 0 TCATTCA 7 2904 2898 1.26392 0 0: 0 0 TCATTCA 8 2931 2925 1.26392 0 0: 0 0 TCATTCG 9 4681 4675 1.26392 0 0: 0 0 TCATTCA 10 4958 4952 1.26392 0 0: 0 0 CCATTCA NM **** 128(26b).Sequence present near the 3'-ends of yeast mitochondrial gen SQ aagaatat CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. .079 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1198 1205 .07898 0 0: 0 0 AAGAATAT 2 1757 1764 .07898 0 0: 0 0 AAGAATAT NM **** 129(27b).Consensus of a presumed transcription processing signal of m SQ ataatattctt AI 00000 2 chain 2 sites find / exp.num. .042 interval 0 TH num begin end exp.num. dist. mismatch site sequence TD 1 1208 1198 .04193 0 1: 1 0 TTAATATTCTT 2 4849 4839 .04193 0 1: 1 0 ATAATATTCAT NM **** 131(29b).Site of splising of vertebrates 3'-end: PNAS (1984) V 81 N 2 SQ yyyyyncagg AI 00000 2 chain 1 sites find / exp.num. .632 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 600 591 .63159 0 0: 0 0 TTTTTCCAGG NM **** 132(33b).Brunch : PNAS (1984) V 81 N 23 P 7417 H SQ uacuaac AI 00000 2 chain 1 sites find / exp.num. .316 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 3929 3923 .31598 0 0: 0 0 TACTAAC NM **** 134(35b).Site of splising of plants 3'-end: NAR (1986) V 14 N 24 P 95 SQ tttkttkkkktgcagg AI 00000 2 chain 2 sites find / exp.num. .172 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1060 1045 .17157 0 2: 2 0 ATTATTGTTGTGCACG 2 3251 3236 .17157 0 2: 2 0 TATTTTTGTTTTCAGG NM **** 135(37b).Conservative blocks in selfsplising introns 1 group A: SQ augcuggaaa CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .153 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 2517 2526 .15296 0 1: 1 0 ATGCTGTAAA AI 00000 2 chain 1 sites find / exp.num. .153 interval 1 TD 1 1664 1655 .15296 0 1: 1 0 ATGCTTGAAA NM **** 139(41b).Consensus sequence found in the same location in intervening SQ aaaatctt AI 00000 2 chain 1 sites find / exp.num. .079 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 2047 2040 .07898 0 0: 0 0 AAAATCTT NM **** 23(19). EMBO J. v4 n10 p2669 H21.3.9 HSV-1/Herpesvirus samuiri SQ taatgarattc CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .079 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 3133 3143 .07893 0 1: 1 0 TGATGAAATTC NM **** 26(27). LVc MOTIF MoMuLV ENHANCER (Mol Cell Biol v7 n3 p1101) SQ cctgc CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. 5.058 interval 9 TH num begin end exp.num. dist. mismatch site sequence TD 1 4610 4614 5.05762 0 0: 0 0 CCTGC AI 00000 2 chain 2 sites find / exp.num. 5.058 interval 9 TD 1 1554 1550 5.05762 0 0: 0 0 CCTGC 2 3845 3841 5.05762 0 0: 0 0 CCTGC NM **** 27(33). LYSOZYME SILENCER 4 (EMBO j v6 n8 p2298) SQ atnnAgtaaaa CC max mismatch : 1 AI 00000 1 chain 3 sites find / exp.num. .493 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 3425 3435 .49334 0 1: 1 0 ATACAGTATAA 2 3804 3814 .49334 0 1: 1 0 ATGAAATAAAA 3 3937 3947 .49334 0 1: 1 0 ACCTAGTAAAA NM **** 35(63).enhancer core SV40 SQ tGTGgxxx CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. .632 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 3721 3728 .63184 0 0: 0 0 TGTGGTTA 2 4204 4211 .63184 0 0: 0 0 TGTGGATT NM **** 154(20). Mol.Cel.Biol. v5 n4 p649 H21.3.3 SQ ccaccca CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .316 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 4816 4822 .31598 0 0: 0 0 CCACCCA NM **** 166(37).Consensus enchanser region of virus SV40 SQ rrtgtggxxx CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .158 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 3719 3728 .15790 0 0: 0 0 GATGTGGTTA NM **** 39(26). NFY SQ ccaat CC max mismatch : 0 AI 00000 1 chain 5 sites find / exp.num. 5.058 interval 9 TH num begin end exp.num. dist. mismatch site sequence TD 1 2496 2500 5.05762 0 0: 0 0 CCAAT 2 2568 2572 5.05762 0 0: 0 0 CCAAT 3 3302 3306 5.05762 0 0: 0 0 CCAAT 4 3865 3869 5.05762 0 0: 0 0 CCAAT 5 4663 4667 5.05762 0 0: 0 0 CCAAT AI 00000 2 chain 7 sites find / exp.num. 5.058 interval 9 TD 1 959 955 5.05762 0 0: 0 0 CCAAT 2 2973 2969 5.05762 0 0: 0 0 CCAAT 3 3326 3322 5.05762 0 0: 0 0 CCAAT 4 3825 3821 5.05762 0 0: 0 0 CCAAT 5 4200 4196 5.05762 0 0: 0 0 CCAAT 6 4219 4215 5.05762 0 0: 0 0 CCAAT 7 4646 4642 5.05762 0 0: 0 0 CCAAT NM **** 40(2). CRF FACTOR(CCAAT-BOX BINDING FACTOR) SQ tnnnCCatnnC CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. 1.263 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 3985 3995 1.26294 0 0: 0 0 TACCCCATGCC AI 00000 2 chain 3 sites find / exp.num. 1.263 interval 3 TD 1 870 860 1.26294 0 0: 0 0 TTATCCATCTC 2 1308 1298 1.26294 0 0: 0 0 TTGTCCATCAC 3 1738 1728 1.26294 0 0: 0 0 TTTGCCATCGC NM **** 187(2.) CRF FACTOR(CCAAT-BOX BINDING FACTOR) SQ tnnnCCatnnC CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. 1.263 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 3985 3995 1.26294 0 0: 0 0 TACCCCATGCC AI 00000 2 chain 3 sites find / exp.num. 1.263 interval 3 TD 1 870 860 1.26294 0 0: 0 0 TTATCCATCTC 2 1308 1298 1.26294 0 0: 0 0 TTGTCCATCAC 3 1738 1728 1.26294 0 0: 0 0 TTTGCCATCGC NM **** 192(7). LARGE T PROTEIN OF PAPILLOMA VIRUS SQ xgrggc CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. 5.057 interval 9 TH num begin end exp.num. dist. mismatch site sequence TD 1 1546 1551 5.05664 0 0: 0 0 AGAGGC 2 2279 2284 5.05664 0 0: 0 0 TGGGGC AI 00000 2 chain 3 sites find / exp.num. 5.057 interval 9 TD 1 3048 3043 5.05664 0 0: 0 0 TGAGGC 2 4004 3999 5.05664 0 0: 0 0 TGAGGC 3 4327 4322 5.05664 0 0: 0 0 TGAGGC NM **** 193(8). RPG FACTOR SQ tgg-cca CC distance between two blocks of site: min = 7 max = 7 CC max mismatch in 1-st block: 0, in 2-nd block: 0 AI 00000 1 chain 2 sites find / exp.num. 1.262 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 302 314 1.26245 7 0: 0 0 TGGgcccagtCCA 2 3167 3179 1.26245 7 0: 0 0 TGGgaagaagCCA AI 00000 2 chain 2 sites find / exp.num. 1.262 interval 3 TD 1 314 302 1.26245 7 0: 0 0 TGGactgggcCCA 2 3179 3167 1.26245 7 0: 0 0 TGGcttcttcCCA NM **** 203(23).Consensus sequence for cAMP receptor protein (CRP or CAP) SQ aantgtganntnnnnca AI 00000 2 chain 1 sites find / exp.num. .153 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 4802 4786 .15276 0 1: 1 0 AAGTGTTAACTGATCCA NM **** 209(30).Site of initiation of translation in genes of animals SQ zaannatgg CC max mismatch : 0 AI 00000 1 chain 4 sites find / exp.num. .632 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 447 455 .63171 0 0: 0 0 GAAAAATGG 2 1594 1602 .63171 0 0: 0 0 GAAAAATGG 3 2241 2249 .63171 0 0: 0 0 GAACCATGG 4 4097 4105 .63171 0 0: 0 0 GAATTATGG NM **** 210(32).Optimal sequence for initiation of translation by eukaryotik SQ accatgg CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .316 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 2243 2249 .31598 0 0: 0 0 ACCATGG AI 00000 2 chain 1 sites find / exp.num. .316 interval 1 TD 1 2250 2244 .31598 0 0: 0 0 ACCATGG NM 41(5). HEAt-SHOSK RESPONSIVE ELEMENT SQ ttcnngaa CC max mismatch : 0 AI 00000 1 chain 5 sites find / exp.num. 1.264 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 2609 2616 1.26367 0 0: 0 0 TTCCTGAA 2 2681 2688 1.26367 0 0: 0 0 TTCCCGAA 3 2717 2724 1.26367 0 0: 0 0 TTCCTGAA 4 2789 2796 1.26367 0 0: 0 0 TTCCCGAA 5 2825 2832 1.26367 0 0: 0 0 TTCCTGAA AI 00000 2 chain 5 sites find / exp.num. 1.264 interval 3 TD 1 2616 2609 1.26367 0 0: 0 0 TTCAGGAA 2 2688 2681 1.26367 0 0: 0 0 TTCGGGAA 3 2724 2717 1.26367 0 0: 0 0 TTCAGGAA 4 2796 2789 1.26367 0 0: 0 0 TTCGGGAA 5 2832 2825 1.26367 0 0: 0 0 TTCAGGAA NM **** 43(22).Heat-shock induction site A SQ cnngaanttcnng CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .079 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 3387 3399 .07890 0 0: 0 0 CTAGAATTTCAAG AI 00000 2 chain 1 sites find / exp.num. .079 interval 1 TD 1 3399 3387 .07890 0 0: 0 0 CTTGAAATTCTAG NM **** 46(12). SRE ELEMENT OF HSP70 pnas v84 n8 p2203 H21.30 SQ aagggaaaag CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .153 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 3775 3784 .15296 0 1: 1 0 AATGGAAAAG NM **** 48(33).Consensus sequence of the recognition sites for the glucocorti SQ tgttct CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. 1.264 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 3088 3093 1.26416 0 0: 0 0 TGTTCT NM **** 52(9). ACUTE REACTANT RESPONSIVE ELEMENT SQ xtZtgGgAx CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .158 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 2510 2518 .15793 0 0: 0 0 TTGTGGGAT AI 00000 2 chain 1 sites find / exp.num. .158 interval 1 TD 1 4809 4801 .15793 0 0: 0 0 TTCTGGGAA NM **** 228(29).Element of promotor of interferone GAMMA SQ aagtgtaat-gagtnnnct AI 00000 2 chain 1 sites find / exp.num. .129 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1908 1886 .12857 5 3: 2 1 GAGTGTACTacaaaAAGTGGTCT NM **** 234(3). LIVER-SPECIFIC FACtOR SQ TCntacTC AI 00000 2 chain 1 sites find / exp.num. .316 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 2876 2869 .31592 0 0: 0 0 TCTTACTC NM **** 235(4). CCCAC-BOX BINDING FACTOR SQ cccac CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. 5.058 interval 9 TH num begin end exp.num. dist. mismatch site sequence TD 1 4819 4823 5.05762 0 0: 0 0 CCCAC AI 00000 2 chain 3 sites find / exp.num. 5.058 interval 9 TD 1 1921 1917 5.05762 0 0: 0 0 CCCAC 2 2487 2483 5.05762 0 0: 0 0 CCCAC 3 2516 2512 5.05762 0 0: 0 0 CCCAC NM **** 241(10). MHC Y-BOX SQ tqCtgattGGytmm AI 00000 2 chain 1 sites find / exp.num. .094 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 3874 3861 .09399 0 2: 2 0 TGCAGATTGGCTTA NM **** 246(15). NF-GMB PROTEIN FOR CYTOKIN 2 SPECIFIC SEQUENCE SQ tyaggrta CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .316 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 3828 3835 .31592 0 0: 0 0 TTAGGATA NM **** 253(22).cycle histone MCB 85 5 2 380 389 SQ GAYTTC CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. 2.528 interval 5 TH num begin end exp.num. dist. mismatch site sequence TD 1 1845 1850 2.52832 0 0: 0 0 GACTTC 2 3507 3512 2.52832 0 0: 0 0 GACTTC AI 00000 2 chain 1 sites find / exp.num. 2.528 interval 5 TD 1 3302 3297 2.52832 0 0: 0 0 GATTTC NM **** 254(23). cycle cell 86 45 4 537 544 trt1 SQ GCGAAA CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. 1.264 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 748 753 1.26416 0 0: 0 0 GCGAAA AI 00000 2 chain 1 sites find / exp.num. 1.264 interval 3 TD 1 663 658 1.26416 0 0: 0 0 GCGAAA NM **** 257(26).Regulated element of gene LSP of D.melanogaster EMBO J (1985) V 4 N P 3789 H SQ aaaytaaagctggt CC max mismatch : 3 AI 00000 1 chain 3 sites find / exp.num. .355 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 286 299 .35461 0 3: 3 0 AAATTACAACAGGT 2 338 351 .35461 0 3: 3 0 GAATTAAAGATTGT 3 2072 2085 .35461 0 3: 3 0 AATTTAAAGGTTGT NM **** 258(27).Regulating element of promotor of contractive(KONTRAKTILNIY) SQ cattcct AI 00000 2 chain 3 sites find / exp.num. .316 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1558 1552 .31598 0 0: 0 0 CATTCCT 2 2703 2697 .31598 0 0: 0 0 CATTCCT 3 2811 2805 .31598 0 0: 0 0 CATTCCT NM **** 263(32).Sequence repeated 5 times in the promoter of the mouse SQ gaaga CC max mismatch : 0 AI 00000 1 chain 9 sites find / exp.num. 5.058 interval 9 TH num begin end exp.num. dist. mismatch site sequence TD 1 857 861 5.05762 0 0: 0 0 GAAGA 2 941 945 5.05762 0 0: 0 0 GAAGA 3 3018 3022 5.05762 0 0: 0 0 GAAGA 4 3062 3066 5.05762 0 0: 0 0 GAAGA 5 3170 3174 5.05762 0 0: 0 0 GAAGA 6 3365 3369 5.05762 0 0: 0 0 GAAGA 7 3845 3849 5.05762 0 0: 0 0 GAAGA 8 3974 3978 5.05762 0 0: 0 0 GAAGA 9 4439 4443 5.05762 0 0: 0 0 GAAGA AI 00000 2 chain 3 sites find / exp.num. 5.058 interval 9 TD 1 1784 1780 5.05762 0 0: 0 0 GAAGA 2 3165 3161 5.05762 0 0: 0 0 GAAGA 3 3645 3641 5.05762 0 0: 0 0 GAAGA NM **** 264(33)."CCAAT box";one of a number of homology blocks at the 5'-ends SQ grccaatnr CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .316 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 4661 4669 .31586 0 0: 0 0 GACCAATCG NM **** 266(35).Consensus pd sequense essential for correct transcription of SQ tgcazctgtgnccag CC max mismatch : 3 AI 00000 1 chain 2 sites find / exp.num. .355 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1639 1653 .35454 0 3: 3 0 TGTACCTGTGATCAA 2 3376 3390 .35454 0 3: 3 0 TGCTCCTGTAGCTAG NM **** 268(37).Consensus sequence of repeated hexanucleotides within the 5'- SQ aarqga CC max mismatch : 0 AI 00000 1 chain 18 sites find / exp.num. 5.057 interval 9 TH num begin end exp.num. dist. mismatch site sequence TD 1 268 273 5.05664 0 0: 0 0 AAAGGA 2 826 831 5.05664 0 0: 0 0 AAGTGA 3 1003 1008 5.05664 0 0: 0 0 AAATGA 4 1118 1123 5.05664 0 0: 0 0 AAGGGA 5 1225 1230 5.05664 0 0: 0 0 AAATGA 6 1281 1286 5.05664 0 0: 0 0 AAGTGA 7 1351 1356 5.05664 0 0: 0 0 AAATGA 8 2122 2127 5.05664 0 0: 0 0 AAATGA 9 2150 2155 5.05664 0 0: 0 0 AAAGGA 10 2524 2529 5.05664 0 0: 0 0 AAATGA 11 2629 2634 5.05664 0 0: 0 0 AAGTGA 12 2737 2742 5.05664 0 0: 0 0 AAGTGA 13 2909 2914 5.05664 0 0: 0 0 AAGGGA 14 2941 2946 5.05664 0 0: 0 0 AAGTGA 15 2992 2997 5.05664 0 0: 0 0 AAATGA 16 3022 3027 5.05664 0 0: 0 0 AAGTGA 17 3802 3807 5.05664 0 0: 0 0 AAATGA 18 5136 5141 5.05664 0 0: 0 0 AAAGGA AI 00000 2 chain 8 sites find / exp.num. 5.057 interval 9 TD 1 1854 1849 5.05664 0 0: 0 0 AAAGGA 2 2070 2065 5.05664 0 0: 0 0 AAATGA 3 2169 2164 5.05664 0 0: 0 0 AAGTGA 4 2470 2465 5.05664 0 0: 0 0 AAATGA 5 3133 3128 5.05664 0 0: 0 0 AAATGA 6 3936 3931 5.05664 0 0: 0 0 AAAGGA 7 4289 4284 5.05664 0 0: 0 0 AAATGA 8 4521 4516 5.05664 0 0: 0 0 AAATGA