ID DMHOBO DE Drosophila transposable element hobo 108 NM **** 1.(1) POLIMERASE II SQ tATAaa CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. .735 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 107 112 .73511 0 0: 0 0 TATAAA 2 1215 1220 .73511 0 0: 0 0 TATAAA AI 00000 2 chain 2 sites find / exp.num. .735 interval 2 TD 1 1757 1752 .73511 0 0: 0 0 TATAAA 2 2382 2377 .73511 0 0: 0 0 TATAAA NM **** 2.(1.1) Inr (ripl.POLIMERASE II) SQ NTCAQTY CC max mismatch : 0 AI 00000 1 chain 3 sites find / exp.num. 2.939 interval 6 TH num begin end exp.num. dist. mismatch site sequence TD 1 513 519 2.93945 0 0: 0 0 CTCAGTT 2 2174 2180 2.93945 0 0: 0 0 CTCAGTT 3 2714 2720 2.93945 0 0: 0 0 TTCATTT AI 00000 2 chain 6 sites find / exp.num. 2.939 interval 6 TD 1 1011 1005 2.93945 0 0: 0 0 GTCAGTC 2 1203 1197 2.93945 0 0: 0 0 GTCAGTC 3 1436 1430 2.93945 0 0: 0 0 ATCATTT 4 2052 2046 2.93945 0 0: 0 0 CTCAGTT 5 2773 2767 2.93945 0 0: 0 0 CTCATTT 6 2800 2794 2.93945 0 0: 0 0 GTCATTT NM **** 3.(38a) "TATA box";one of a number of homology blocks at the 5'-ends SQ gtataaaatag CC max mismatch : 2 AI 00000 1 chain 2 sites find / exp.num. .379 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 1214 1224 .37913 0 2: 2 0 ATATAAAAAAG 2 1467 1477 .37913 0 2: 2 0 GGATAAAATAT AI 00000 2 chain 3 sites find / exp.num. .379 interval 2 TD 1 1656 1646 .37913 0 2: 2 0 GTCTAAAATAT 2 1842 1832 .37913 0 2: 2 0 GTATGAAATTG 3 2383 2373 .37913 0 2: 2 0 ATATAAAATAT NM **** 4.(9a) n=55;found upstream from the promoter of the pheasant conalbu- SQ ggaaa CC max mismatch : 0 AI 00000 1 chain 6 sites find / exp.num. 2.941 interval 6 TH num begin end exp.num. dist. mismatch site sequence TD 1 447 451 2.94141 0 0: 0 0 GGAAA 2 536 540 2.94141 0 0: 0 0 GGAAA 3 720 724 2.94141 0 0: 0 0 GGAAA 4 1680 1684 2.94141 0 0: 0 0 GGAAA 5 1692 1696 2.94141 0 0: 0 0 GGAAA 6 2150 2154 2.94141 0 0: 0 0 GGAAA AI 00000 2 chain 6 sites find / exp.num. 2.941 interval 6 TD 1 258 254 2.94141 0 0: 0 0 GGAAA 2 278 274 2.94141 0 0: 0 0 GGAAA 3 832 828 2.94141 0 0: 0 0 GGAAA 4 1048 1044 2.94141 0 0: 0 0 GGAAA 5 1991 1987 2.94141 0 0: 0 0 GGAAA 6 2246 2242 2.94141 0 0: 0 0 GGAAA NM **** 6.(5) POLY A SINGLE BLOCK SQ AATAAA CC max mismatch : 0 AI 00000 1 chain 4 sites find / exp.num. .735 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 490 495 .73511 0 0: 0 0 AATAAA 2 523 528 .73511 0 0: 0 0 AATAAA 3 1507 1512 .73511 0 0: 0 0 AATAAA 4 1797 1802 .73511 0 0: 0 0 AATAAA AI 00000 2 chain 2 sites find / exp.num. .735 interval 2 TD 1 1154 1149 .73511 0 0: 0 0 AATAAA 2 2562 2557 .73511 0 0: 0 0 AATAAA NM **** 8.(14b) One of two related variants of a presumed transcription termi SQ tatgt CC max mismatch : 0 AI 00000 1 chain 4 sites find / exp.num. 2.941 interval 6 TH num begin end exp.num. dist. mismatch site sequence TD 1 560 564 2.94141 0 0: 0 0 TATGT 2 1015 1019 2.94141 0 0: 0 0 TATGT 3 2551 2555 2.94141 0 0: 0 0 TATGT 4 2626 2630 2.94141 0 0: 0 0 TATGT AI 00000 2 chain 3 sites find / exp.num. 2.941 interval 6 TD 1 330 326 2.94141 0 0: 0 0 TATGT 2 512 508 2.94141 0 0: 0 0 TATGT 3 532 528 2.94141 0 0: 0 0 TATGT NM **** 13.(19) ARS Y XE DM SQ xtttatrtttx CC max mismatch : 1 AI 00000 1 chain 2 sites find / exp.num. .161 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 385 395 .16054 0 1: 1 0 TTTTTTGTTTT 2 2376 2386 .16054 0 1: 1 0 TTTTATATTAT AI 00000 2 chain 4 sites find / exp.num. .161 interval 1 TD 1 496 486 .16054 0 1: 1 0 TTTTATTTTTA 2 535 525 .16054 0 1: 1 0 CTTTATGTTTA 3 1221 1211 .16054 0 1: 1 0 TTTTATATTTG 4 2592 2582 .16054 0 1: 1 0 TTTTACGTTTT NM **** 14.(24) ARS yeast, xenopus SQ xttttatrtttx CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .044 interval 0 TH num begin end exp.num. dist. mismatch site sequence TD 1 2375 2386 .04442 0 1: 1 0 ATTTTATATTAT AI 00000 2 chain 3 sites find / exp.num. .044 interval 0 TD 1 497 486 .04442 0 1: 1 0 ATTTTATTTTTA 2 1222 1211 .04442 0 1: 1 0 TTTTTATATTTG 3 2593 2582 .04442 0 1: 1 0 TTTTTACGTTTT NM **** 15.(22) SAR A BOX OF DROSOFILA j mol biol v198 n 4 p677 &cell v46 n4 SQ aataaayaaa CC max mismatch : 1 AI 00000 1 chain 3 sites find / exp.num. .166 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 523 532 .16633 0 1: 1 0 AATAAACATA 2 1995 2004 .16633 0 1: 1 0 AAAAAACAAA 3 2592 2601 .16633 0 1: 1 0 AATCAACAAA AI 00000 2 chain 1 sites find / exp.num. .166 interval 1 TD 1 397 388 .16633 0 1: 1 0 AAAAAACAAA NM **** 16.(23) SAR T BOX OF DROSOFILA cell v46 n4 p521 SQ TtXTxTTXtt CC max mismatch : 1 AI 00000 1 chain 8 sites find / exp.num. .252 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 387 396 .25236 0 1: 1 0 TTTTGTTTTT 2 1747 1756 .25236 0 1: 1 0 TTTTTTTTAT 3 1748 1757 .25236 0 1: 1 0 TTTTTTTATA 4 2378 2387 .02294 0 0: 0 0 TTATATTATT 5 2391 2400 .25236 0 1: 1 0 TCTTATTATT 6 2553 2562 .25236 0 1: 1 0 TGTTTTTATT 7 2556 2565 .02294 0 0: 0 0 TTTTATTATT 8 2867 2876 .25236 0 1: 1 0 TTTTTTTACT AI 00000 2 chain 6 sites find / exp.num. .298 interval 1 TD 1 496 487 .02294 0 0: 0 0 TTTTATTTTT 2 499 490 .29824 0 1: 1 0 TAATTTTATT 3 963 954 .29824 0 1: 1 0 TTTTTTTATC 4 2000 1991 .29824 0 1: 1 0 TTTTTTTTTG 5 2002 1993 .29824 0 1: 1 0 TGTTTTTTTT 6 2005 1996 .29824 0 1: 1 0 TTTTGTTTTT NM **** 17(30). initiation of translation in genes of animals SQ zaannatgg CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .367 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 458 466 .36719 0 0: 0 0 CAATAATGG NM **** 55(3). ANIMAL POLIMERASE II SQ ggycaatct-tataxax CC distance between two blocks of site: min = 19 max = 61 CC max mismatch in 1-st block: 1, in 2-nd block: 1 AI 00000 1 chain 1 sites find / exp.num. .111 interval 0 TH num begin end exp.num. dist. mismatch site sequence TD 1 1716 1758 .11099 27 2: 1 1 GGCAAATCTaagcatatggcataaggcggcatttttTTTATAT NM **** 60(11). INTRON-EXON JUNCTION SQ yyyyynyAGG AI 00000 2 chain 1 sites find / exp.num. .734 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 206 197 .73413 0 0: 0 0 CCTTTTTAGG NM **** 61(12). lar+3' SQ YTaAT-yyyyaG CC distance between two blocks of site: min = 16 max = 36 AI max mismatch in 1-st block: 0, in 2-nd block: 0 TH 00000 1 chain 1 sites find / exp.num. .477 interval 2 TD num begin end exp.num. dist. mismatch site sequence 1 1505 1543 .47745 28 0: 0 0 TTAATaaatcatctttaaaagttgtggtagataTTCTAG NM **** 66(25).ARS-fragment of chlamydomonada SQ attaacaat CC max mismatch : 1 AI 00000 1 chain 3 sites find / exp.num. .321 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 496 504 .01147 0 0: 0 0 ATTAACAAT 2 705 713 .32129 0 1: 1 0 ATTAAAAAT 3 2445 2453 .32129 0 1: 1 0 ATTAATAAT AI 00000 2 chain 3 sites find / exp.num. .321 interval 1 TD 1 1185 1177 .32129 0 1: 1 0 ATTATCAAT 2 2390 2382 .32129 0 1: 1 0 ATTAATAAT 3 2469 2461 .32129 0 1: 1 0 AATAACAAT NM **** 67(26).ARS-fragment of chlamydomonada SQ raattttaaat AI 00000 2 chain 2 sites find / exp.num. .046 interval 0 TH num begin end exp.num. dist. mismatch site sequence TD 1 817 807 .04587 0 1: 1 0 AATTTTTAAAT 2 1072 1062 .04587 0 1: 1 0 AAAGTTTAAAT NM **** 68(27).ARS of chloroplasts SQ anrtnaccaagt AI 00000 2 chain 1 sites find / exp.num. .166 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1079 1068 .16622 0 1: 1 0 ATGTCACAAAGT NM **** 69(28).ARS of human SQ tattyytaaatttagtxt CC max mismatch : 5 AI 00000 1 chain 2 sites find / exp.num. .442 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 1698 1715 .44197 0 5: 5 0 TATTCGTAAGATTTGGAT 2 2399 2416 .05820 0 4: 4 0 TTTGCTTAATTTTTGTAT AI 00000 2 chain 4 sites find / exp.num. .442 interval 2 TD 1 505 488 .05820 0 4: 4 0 CATTGTTAATTTTATTTT 2 1731 1714 .44197 0 5: 5 0 TATGCTTAGATTTGCCAT 3 1997 1980 .44197 0 5: 5 0 TTTTTTGGAAATAAGTTT 4 2762 2745 .05820 0 4: 4 0 TACGCCTAAAATTTGTAT NM **** 71(31).sequence repeated nontandemly several times in the origin of t SQ gcctc CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. 2.941 interval 6 TH num begin end exp.num. dist. mismatch site sequence TD 1 2305 2309 2.94141 0 0: 0 0 GCCTC 2 2856 2860 2.94141 0 0: 0 0 GCCTC AI 00000 2 chain 2 sites find / exp.num. 2.941 interval 6 TD 1 1301 1297 2.94141 0 0: 0 0 GCCTC 2 2646 2642 2.94141 0 0: 0 0 GCCTC NM **** 72(33).consensus sequence of the cores of autonomously replicating SQ xaaayataaax CC max mismatch : 1 AI 00000 1 chain 4 sites find / exp.num. .161 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 486 496 .16054 0 1: 1 0 TAAAAATAAAA 2 525 535 .16054 0 1: 1 0 TAAACATAAAG 3 1211 1221 .16054 0 1: 1 0 CAAATATAAAA 4 2582 2592 .16054 0 1: 1 0 AAAACGTAAAA AI 00000 2 chain 2 sites find / exp.num. .161 interval 1 TD 1 395 385 .16054 0 1: 1 0 AAAACAAAAAA 2 2386 2376 .16054 0 1: 1 0 ATAATATAAAA NM **** 75(3a).Promotor of RNA polymerase 1 (human) SQ atcttt-ttttgg AI 00000 2 chain 4 sites find / exp.num. .321 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1340 1310 .32115 19 2: 1 1 ATTTTTttgcatgatttcacaatttTTTTGA 2 1340 1311 .32115 18 2: 1 1 ATTTTTttgcatgatttcacaattTTTTTG 3 1360 1331 .32115 18 2: 1 1 ATTTTTtgcagtacttcacgatttTTTTGC 4 2157 2124 .32115 22 2: 1 1 ATTTTTccaccactcaattacttcaaaaTTTTGA NM **** 80(11a).consensus sequence near the 3'-ends of the adenovirus 2 genes SQ gggttg CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .735 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 761 766 .73511 0 0: 0 0 GGGTTG NM **** 89(20a).one of two suggested consensus sequences for RNA-polymerase I SQ tggcnnagtgg CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .321 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1456 1466 .32108 0 1: 1 0 TGGCGTAGTGT AI 00000 2 chain 1 sites find / exp.num. .321 interval 1 TD 1 2836 2826 .32108 0 1: 1 0 TGGGTGAGTGG NM **** 97(28a).consensus sequence of human mitochondrial promoters SQ canaccccaaagaya CC max mismatch : 3 AI 00000 1 chain 1 sites find / exp.num. .206 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 2662 2676 .20591 0 3: 3 0 CAAAGAGCAAAGACA NM **** 99(31a).putative regulatory sequence(promoter element) present in SQ gggnggrr AI 00000 2 chain 1 sites find / exp.num. .735 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 2744 2737 .73462 0 0: 0 0 GGGTGGAA NM **** 100(32a).consensus of the TATA-box of Dictyostelium promoters SQ tataaaxa CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .092 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1215 1222 .09183 0 0: 0 0 TATAAAAA AI 00000 2 chain 1 sites find / exp.num. .092 interval 1 TD 1 1757 1750 .09183 0 0: 0 0 TATAAAAA NM **** 101(33a)."Goldberg-Hogness box";consensus sequence belonging to eukar SQ tataxax CC max mismatch : 0 AI 00000 1 chain 3 sites find / exp.num. .735 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 107 113 .73486 0 0: 0 0 TATAAAT 2 1215 1221 .73486 0 0: 0 0 TATAAAA 3 2453 2459 .73486 0 0: 0 0 TATATAA AI 00000 2 chain 3 sites find / exp.num. .735 interval 2 TD 1 1757 1751 .73486 0 0: 0 0 TATAAAA 2 2382 2376 .73486 0 0: 0 0 TATAAAA 3 2458 2452 .73486 0 0: 0 0 TATATAT NM **** 103(36a).consensus sequence of a tentative transcription initiation SQ aagtta CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .735 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 2185 2190 .73511 0 0: 0 0 AAGTTA NM **** 104(37a).sequence frequently found in the promoter region of histone SQ ccgca CC max mismatch : 0 AI 00000 1 chain 3 sites find / exp.num. 2.941 interval 6 TH num begin end exp.num. dist. mismatch site sequence TD 1 1763 1767 2.94141 0 0: 0 0 CCGCA 2 2783 2787 2.94141 0 0: 0 0 CCGCA 3 2924 2928 2.94141 0 0: 0 0 CCGCA AI 00000 2 chain 2 sites find / exp.num. 2.941 interval 6 TD 1 63 59 2.94141 0 0: 0 0 CCGCA 2 2806 2802 2.94141 0 0: 0 0 CCGCA NM **** 107(42a). POLIII SQ trnnrrngg-gxtcrannc AI 00000 2 chain 1 sites find / exp.num. .280 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1596 1547 .27975 32 1: 0 1 TATAGATGGtgagctagatgtttgcaacttcttaaatattcGTTCAAAGT NM **** 113(6b).Sequence located at the 3'-ends of yeast genes,presumably SQ tttttata CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .046 interval 0 TH num begin end exp.num. dist. mismatch site sequence TD 1 1750 1757 .04591 0 0: 0 0 TTTTTATA AI 00000 2 chain 1 sites find / exp.num. .046 interval 0 TD 1 1222 1215 .04591 0 0: 0 0 TTTTTATA NM **** 119(13b).One of two related variants of a presumed transcription term SQ tagtggtggtgggct AI 00000 2 chain 1 sites find / exp.num. .346 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1596 1582 .34624 0 4: 4 0 TATAGATGGTGAGCT NM **** 121(16b).Consensus of a presumed polyadenylation signal in Trypanosom SQ aaaattyt CC max mismatch : 0 AI 00000 1 chain 3 sites find / exp.num. .092 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1621 1628 .09183 0 0: 0 0 AAAATTTT 2 2126 2133 .09183 0 0: 0 0 AAAATTTT 3 2685 2692 .09183 0 0: 0 0 AAAATTTT AI 00000 2 chain 4 sites find / exp.num. .092 interval 1 TD 1 1628 1621 .09183 0 0: 0 0 AAAATTTT 2 1691 1684 .09183 0 0: 0 0 AAAATTCT 3 2133 2126 .09183 0 0: 0 0 AAAATTTT 4 2692 2685 .09183 0 0: 0 0 AAAATTTT NM **** 123(21b).Signal of formiration 3'-end in mRNA of histone genes SQ caagaaaga CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .321 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 729 737 .32129 0 1: 1 0 CAAGAAAGT NM **** 128(26b).Sequence present near the 3'-ends of yeast mitochondrial gen SQ aagaatat AI 00000 2 chain 1 sites find / exp.num. .046 interval 0 TH num begin end exp.num. dist. mismatch site sequence TD 1 1794 1787 .04591 0 0: 0 0 AAGAATAT NM **** 129(27b).Consensus of a presumed transcription processing signal of m SQ ataatattctt CC max mismatch : 2 AI 00000 1 chain 4 sites find / exp.num. .379 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 1694 1704 .37913 0 2: 2 0 AAAATATTCGT 2 1784 1794 .37913 0 2: 2 0 AAGATATTCTT 3 2456 2466 .37913 0 2: 2 0 ATAAGATTGTT 4 2685 2695 .37913 0 2: 2 0 AAAATTTTCTT AI 00000 2 chain 2 sites find / exp.num. .379 interval 2 TD 1 2379 2369 .37913 0 2: 2 0 AAAATATACTT 2 2468 2458 .37913 0 2: 2 0 ATAACAATCTT NM **** 134(35b).Site of splising of plants 3'-end: NAR (1986) V 14 N 24 P 95 SQ tttkttkkkktgcagg AI 00000 2 chain 2 sites find / exp.num. .100 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1364 1349 .09963 0 2: 2 0 TTTGATTTTTTGCAGT 2 2797 2782 .09963 0 2: 2 0 ATTTTTTGTATGCGGG NM **** 135(37b).Conservative blocks in selfsplising introns 1 group A: SQ augcuggaaa AI 00000 2 chain 1 sites find / exp.num. .089 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1374 1365 .08890 0 1: 1 0 ATGCTGCAAA NM **** 20(7). DECAMER FROM IMMUNOGLOBULIN GENES SQ AtGCAAAtna CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .115 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1329 1338 .11471 0 1: 1 0 ATGCAAAAAA AI 00000 2 chain 3 sites find / exp.num. .115 interval 1 TD 1 1814 1805 .11471 0 1: 1 0 ATGCAAAACA 2 2321 2312 .11471 0 1: 1 0 ATGCAAAAAA 3 2405 2396 .11471 0 1: 1 0 AAGCAAATAA NM **** 22(18). PNAS v84 n5 p1272 H21.3.5 PROTEIN BINDING SITE IN c-FOS ENHAN SQ cccgtc CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .735 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 2727 2732 .73511 0 0: 0 0 CCCGTC NM **** 23(19). EMBO J. v4 n10 p2669 H21.3.9 HSV-1/Herpesvirus samuiri SQ taatgarattc CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .046 interval 0 TH num begin end exp.num. dist. mismatch site sequence TD 1 2509 2519 .04587 0 1: 1 0 TAATGAAGTTC NM **** 25(25). LVa MOTIF MoMuLV ENHANCER (Mol Cell Biol v7 n3 p1101) SQ gaacag CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .735 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 856 861 .73511 0 0: 0 0 GAACAG AI 00000 2 chain 2 sites find / exp.num. .735 interval 2 TD 1 592 587 .73511 0 0: 0 0 GAACAG 2 609 604 .73511 0 0: 0 0 GAACAG NM **** 26(27). LVc MOTIF MoMuLV ENHANCER (Mol Cell Biol v7 n3 p1101) SQ cctgc CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. 2.941 interval 6 TH num begin end exp.num. dist. mismatch site sequence TD 1 2800 2804 2.94141 0 0: 0 0 CCTGC AI 00000 2 chain 3 sites find / exp.num. 2.941 interval 6 TD 1 615 611 2.94141 0 0: 0 0 CCTGC 2 2254 2250 2.94141 0 0: 0 0 CCTGC 3 2856 2852 2.94141 0 0: 0 0 CCTGC NM **** 27(33). LYSOZYME SILENCER 4 (EMBO j v6 n8 p2298) SQ atnnAgtaaaa CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .287 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 2428 2438 .28667 0 1: 1 0 ATTAAGTATAA AI 00000 2 chain 1 sites find / exp.num. .287 interval 1 TD 1 1513 1503 .28667 0 1: 1 0 ATTTATTAAAA NM **** 29(42).Enchanser region of virus PV SQ gctgtgqttttgca AI 00000 2 chain 2 sites find / exp.num. .206 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 107 94 .20598 0 3: 3 0 ACTGTGTGTTTGTA 2 2893 2880 .20598 0 3: 3 0 GTTGTGTTTTTGTT NM **** 31(48).Enchanser region of virus LPV SQ aagtctgcanagtctgca CC max mismatch : 5 AI 00000 1 chain 1 sites find / exp.num. .300 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1965 1982 .29957 0 5: 5 0 AAGTCTAGAAAGTCCAAA NM **** 34(60).potential core sequence of enhancers of various human viruses SQ cxxxccac AI 00000 2 chain 1 sites find / exp.num. .367 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 974 967 .36731 0 0: 0 0 CTATCCAC NM **** 35(63).enhancer core SV40 SQ tGTGgxxx CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. .367 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 966 973 .36731 0 0: 0 0 TGTGGATA 2 1464 1471 .36731 0 0: 0 0 TGTGGATA NM **** 144(6). OCTAMER FROM IMMUNOGLOBULIN GENES SQ atgcaaagc AI 00000 2 chain 1 sites find / exp.num. .321 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1814 1806 .32129 0 1: 1 0 ATGCAAAAC NM **** 145(8). SV40 ENHANCER CORE SQ tgtggxxxg CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .092 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 966 974 .09180 0 0: 0 0 TGTGGATAG NM **** 152(16). Mol.Cel.Biol. v8 n3 p1055 ALPHA 1-ANTITRIPSIN SITE3 SQ gctttgcttaag CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .007 interval 0 TH num begin end exp.num. dist. mismatch site sequence TD 1 1669 1680 .00663 0 1: 1 0 GCATTGCTTAAG NM **** 154(20). Mol.Cel.Biol. v5 n4 p649 H21.3.3 SQ ccaccca CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .184 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 2739 2745 .18372 0 0: 0 0 CCACCCA NM **** 157(24). C MOTIF Ig ENHANCER SQ aAAACCACC AI 00000 2 chain 1 sites find / exp.num. .046 interval 0 TH num begin end exp.num. dist. mismatch site sequence TD 1 2870 2862 .01147 0 0: 0 0 AAAACCACC NM **** 162(31). lysozyme silencer 2 (EMBO J v6 n8 p2298) SQ antcTcctcc CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .287 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 942 951 .28677 0 1: 1 0 AATCTCGTCC NM **** 164(35). INSULIN ENHANCER (pnas v84 p8819) SQ gccatctgc AI 00000 2 chain 1 sites find / exp.num. .321 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1735 1727 .32129 0 1: 1 0 GCCATATGC NM **** 166(37).Consensus enchanser region of virus SV40 SQ rrtgtggxxx CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .092 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1462 1471 .09177 0 0: 0 0 AGTGTGGATA NM **** 170(41).Block C of enchanser of virus SV40 SQ tgtggaaagtcccca CC max mismatch : 4 AI 00000 1 chain 1 sites find / exp.num. .346 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1968 1982 .34624 0 4: 4 0 TCTAGAAAGTCCAAA AI 00000 2 chain 1 sites find / exp.num. .346 interval 1 TD 1 281 267 .34624 0 4: 4 0 TTTGGAAACACCCGA NM **** 175(49).Element of enchanser of virus BKV SQ gagtatgca AI 00000 2 chain 1 sites find / exp.num. .321 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1378 1370 .32129 0 1: 1 0 GAGTATGCT NM **** 176(50).Element of enchanser of genes of mnRNA (U1,U2) SQ gggcgrcn-yatgcaaat CC distance between two blocks of site: min = 1 max = 3 CC max mismatch in 1-st block: 2, in 2-nd block: 2 AI 00000 1 chain 1 sites find / exp.num. .438 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 64 83 .43763 3 4: 2 2 GTGCTACTcgcCACGCACAT NM **** 183(59).Conservative elements of Ig enchanser (B,E1,E2,E3) SQ cccatgtggt AI 00000 2 chain 1 sites find / exp.num. .089 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 251 242 .08890 0 1: 1 0 CCCATGTGTT NM **** 184(61).Putative enhancer core sequence of SV40 SQ ggagtggaaag AI 00000 2 chain 1 sites find / exp.num. .379 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 1053 1043 .37913 0 2: 2 0 GTAATGGAAAG NM **** 39(26). NFY SQ ccaat CC max mismatch : 0 AI 00000 1 chain 5 sites find / exp.num. 2.941 interval 6 TH num begin end exp.num. dist. mismatch site sequence TD 1 521 525 2.94141 0 0: 0 0 CCAAT 2 656 660 2.94141 0 0: 0 0 CCAAT 3 756 760 2.94141 0 0: 0 0 CCAAT 4 1301 1305 2.94141 0 0: 0 0 CCAAT 5 1831 1835 2.94141 0 0: 0 0 CCAAT NM **** 192(7). LARGE T PROTEIN OF PAPILLOMA VIRUS SQ xgrggc AI 00000 2 chain 1 sites find / exp.num. 2.940 interval 6 TH num begin end exp.num. dist. mismatch site sequence TD 1 385 380 2.94043 0 0: 0 0 AGGGGC NM **** 193(8). RPG FACTOR SQ tgg-cca CC distance between two blocks of site: min = 7 max = 7 CC max mismatch in 1-st block: 0, in 2-nd block: 0 AI 00000 1 chain 1 sites find / exp.num. .733 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 2639 2651 .73340 7 0: 0 0 TGGgaggcacCCA AI 00000 2 chain 1 sites find / exp.num. .733 interval 2 TD 1 2651 2639 .73340 7 0: 0 0 TGGgtgcctcCCA NM **** 202(22).Consensus sequence of the cAMP-CRP(cyclic AMP complex with it SQ aaagtgtgaca CC max mismatch : 2 AI 00000 1 chain 2 sites find / exp.num. .379 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 1316 1326 .37913 0 2: 2 0 AAATTGTGAAA 2 2497 2507 .37913 0 2: 2 0 AAAATGTGAAA AI 00000 2 chain 1 sites find / exp.num. .379 interval 2 TD 1 572 562 .37913 0 2: 2 0 AAAATGTCACA NM **** 203(23).Consensus sequence for cAMP receptor protein (CRP or CAP) SQ aantgtganntnnnnca CC max mismatch : 1 AI 00000 1 chain 3 sites find / exp.num. .089 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 540 556 .08869 0 1: 1 0 AAGTGTTATTTGGAGCA 2 1317 1333 .00286 0 0: 0 0 AATTGTGAAATCATGCA 3 1338 1354 .08869 0 1: 1 0 AATCGTGAAGTACTGCA AI 00000 2 chain 1 sites find / exp.num. .089 interval 1 TD 1 1367 1351 .08869 0 1: 1 0 AAATTTGATTTTTTGCA NM **** 204(24).Consensus dc sequence essential for correct transcription of SQ tnatttgcat CC max mismatch : 1 AI 00000 1 chain 3 sites find / exp.num. .321 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1805 1814 .32118 0 1: 1 0 TGTTTTGCAT 2 2312 2321 .32118 0 1: 1 0 TTTTTTGCAT 3 2396 2405 .32118 0 1: 1 0 TTATTTGCTT AI 00000 2 chain 2 sites find / exp.num. .321 interval 1 TD 1 1144 1135 .32118 0 1: 1 0 TAATTTTCAT 2 1338 1329 .32118 0 1: 1 0 TTTTTTGCAT NM **** 209(30).Site of initiation of translation in genes of animals SQ zaannatgg CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .367 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 458 466 .36719 0 0: 0 0 CAATAATGG NM **** 41(5). HEAt-SHOSK RESPONSIVE ELEMENT SQ ttcnngaa CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. .735 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 1775 1782 .73462 0 0: 0 0 TTCAGGAA 2 1790 1797 .73462 0 0: 0 0 TTCTTGAA AI 00000 2 chain 2 sites find / exp.num. .735 interval 2 TD 1 1782 1775 .73462 0 0: 0 0 TTCCTGAA 2 1797 1790 .73462 0 0: 0 0 TTCAAGAA NM **** 42(7). heat-shock HSP70 SQ ctcgaatgTTcgcgaaa CC max mismatch : 5 AI 00000 1 chain 2 sites find / exp.num. .149 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 266 282 .14905 0 5: 5 0 CTCGGGTGTTTCCAAAA 2 1269 1285 .14905 0 5: 5 0 GTCAAATGTTTTAGAAA NM **** 44(10). HEAVY METALL RESPONSIVE ELEMENT SQ tgCrcyc CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .735 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 751 757 .73486 0 0: 0 0 TGCACCC NM **** 46(12). SRE ELEMENT OF HSP70 pnas v84 n8 p2203 H21.30 SQ aagggaaaag CC max mismatch : 1 AI 00000 1 chain 2 sites find / exp.num. .089 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 444 453 .08890 0 1: 1 0 AAAGGAAAAG 2 533 542 .00287 0 0: 0 0 AAGGGAAAAG NM **** 48(33).Consensus sequence of the recognition sites for the glucocorti SQ tgttct CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. .735 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 588 593 .73511 0 0: 0 0 TGTTCT 2 605 610 .73511 0 0: 0 0 TGTTCT AI 00000 2 chain 1 sites find / exp.num. .735 interval 2 TD 1 1177 1172 .73511 0 0: 0 0 TGTTCT NM **** 225(25).Site of induction J-strand of Ig genes SQ tgaagctgtgatgac AI 00000 2 chain 1 sites find / exp.num. .346 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1778 1764 .34624 0 4: 4 0 TGAAGATGTGCTGCG NM **** 235(4). CCCAC-BOX BINDING FACTOR SQ cccac CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. 2.941 interval 6 TH num begin end exp.num. dist. mismatch site sequence TD 1 2546 2550 2.94141 0 0: 0 0 CCCAC AI 00000 2 chain 1 sites find / exp.num. 2.941 interval 6 TD 1 231 227 2.94141 0 0: 0 0 CCCAC NM **** 242(11). ANTITROMBIN-III ENHANCER SPECIFIC FACTOR SQ gtGGxxxg CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .367 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 967 974 .36731 0 0: 0 0 GTGGATAG NM **** 252(21). RIBOSOMAL PROTEIN SPECIFIC MOTIF (JBC v263 n33 p17772) SQ cttccg AI 00000 2 chain 2 sites find / exp.num. .735 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 909 904 .73511 0 0: 0 0 CTTCCG 2 980 975 .73511 0 0: 0 0 CTTCCG NM **** 253(22).cycle histone MCB 85 5 2 380 389 SQ GAYTTC CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. 1.470 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 478 483 1.47021 0 0: 0 0 GATTTC AI 00000 2 chain 2 sites find / exp.num. 1.470 interval 4 TD 1 1328 1323 1.47021 0 0: 0 0 GATTTC 2 1442 1437 1.47021 0 0: 0 0 GACTTC NM **** 254(23). cycle cell 86 45 4 537 544 trt1 SQ GCGAAA CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .735 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 2273 2278 .73511 0 0: 0 0 GCGAAA NM **** 258(27).Regulating element of promotor of contractive(KONTRAKTILNIY) SQ cattcct CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .184 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 2319 2325 .18372 0 0: 0 0 CATTCCT NM **** 259(28).Regulating element of myofibrilative proteins SQ gcccgannnncaaatat CC max mismatch : 3 AI 00000 1 chain 3 sites find / exp.num. .378 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 802 818 .37837 0 3: 3 0 GCCGGATTTAAAAATTT 2 1201 1217 .37837 0 3: 3 0 GACAGGGGAGCAAATAT 3 2781 2797 .37837 0 3: 3 0 GCCCGCATACAAAAAAT NM **** 260(29).Regurating site of histone genes SQ ctnatttgcata CC max mismatch : 2 AI 00000 1 chain 2 sites find / exp.num. .379 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 1983 1994 .37900 0 2: 2 0 CTTATTTCCAAA 2 2395 2406 .37900 0 2: 2 0 ATTATTTGCTTA NM **** 262(31).Consensus sequence of transcription regulation sites near SQ cytttgcryycg AI 00000 2 chain 1 sites find / exp.num. .083 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 928 917 .08311 0 1: 1 0 CTTCTGCATCCG NM **** 263(32).Sequence repeated 5 times in the promoter of the mouse SQ gaaga CC max mismatch : 0 AI 00000 1 chain 6 sites find / exp.num. 2.941 interval 6 TH num begin end exp.num. dist. mismatch site sequence TD 1 577 581 2.94141 0 0: 0 0 GAAGA 2 925 929 2.94141 0 0: 0 0 GAAGA 3 930 934 2.94141 0 0: 0 0 GAAGA 4 977 981 2.94141 0 0: 0 0 GAAGA 5 1780 1784 2.94141 0 0: 0 0 GAAGA 6 1783 1787 2.94141 0 0: 0 0 GAAGA AI 00000 2 chain 4 sites find / exp.num. 2.941 interval 6 TD 1 1777 1773 2.94141 0 0: 0 0 GAAGA 2 2015 2011 2.94141 0 0: 0 0 GAAGA 3 2031 2027 2.94141 0 0: 0 0 GAAGA 4 2034 2030 2.94141 0 0: 0 0 GAAGA NM **** 264(33)."CCAAT box";one of a number of homology blocks at the 5'-ends SQ grccaatnr CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .184 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1299 1307 .18359 0 0: 0 0 GGCCAATGA NM **** 265(34).Consensus sequence of a putative transcription control elemen SQ tcccgcm CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .367 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 664 670 .36743 0 0: 0 0 TCCCGCC NM **** 268(37).Consensus sequence of repeated hexanucleotides within the 5'- SQ aarqga CC max mismatch : 0 AI 00000 1 chain 7 sites find / exp.num. 2.940 interval 6 TH num begin end exp.num. dist. mismatch site sequence TD 1 203 208 2.94043 0 0: 0 0 AAGGGA 2 444 449 2.94043 0 0: 0 0 AAAGGA 3 533 538 2.94043 0 0: 0 0 AAGGGA 4 573 578 2.94043 0 0: 0 0 AAAGGA 5 1430 1435 2.94043 0 0: 0 0 AAATGA 6 2767 2772 2.94043 0 0: 0 0 AAATGA 7 2794 2799 2.94043 0 0: 0 0 AAATGA AI 00000 2 chain 4 sites find / exp.num. 2.940 interval 6 TD 1 1045 1040 2.94043 0 0: 0 0 AAGTGA 2 2313 2308 2.94043 0 0: 0 0 AAAGGA 3 2707 2702 2.94043 0 0: 0 0 AAGGGA 4 2720 2715 2.94043 0 0: 0 0 AAATGA NM **** 271(41).Sequence frequently found in the promoter region of histone H SQ cgcac CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. 2.941 interval 6 TH num begin end exp.num. dist. mismatch site sequence TD 1 77 81 2.94141 0 0: 0 0 CGCAC 2 146 150 2.94141 0 0: 0 0 CGCAC AI 00000 2 chain 5 sites find / exp.num. 2.941 interval 6 TD 1 62 58 2.94141 0 0: 0 0 CGCAC 2 147 143 2.94141 0 0: 0 0 CGCAC 3 990 986 2.94141 0 0: 0 0 CGCAC 4 2824 2820 2.94141 0 0: 0 0 CGCAC 5 2994 2990 2.94141 0 0: 0 0 CGCAC