ID DMJOC DE D.melanogaster mobile element jockey gag-specific protein gene, NM **** 1.(1) POLIMERASE II SQ tATAaa CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. 1.219 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 3881 3886 1.21875 0 0: 0 0 TATAAA 2 4901 4906 1.21875 0 0: 0 0 TATAAA NM **** 2.(1.1) Inr (ripl.POLIMERASE II) SQ NTCAQTY CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. 4.874 interval 9 TH num begin end exp.num. dist. mismatch site sequence TD 1 2246 2252 4.87402 0 0: 0 0 CTCAGTC 2 4355 4361 4.87402 0 0: 0 0 CTCATTC AI 00000 2 chain 5 sites find / exp.num. 4.874 interval 9 TD 1 789 783 4.87402 0 0: 0 0 GTCAGTC 2 1650 1644 4.87402 0 0: 0 0 ATCAGTC 3 1691 1685 4.87402 0 0: 0 0 TTCATTT 4 2044 2038 4.87402 0 0: 0 0 GTCATTT 5 4384 4378 4.87402 0 0: 0 0 TTCATTT NM **** 4.(9a) n=55;found upstream from the promoter of the pheasant conalbu- SQ ggaaa CC max mismatch : 0 AI 00000 1 chain 10 sites find / exp.num. 4.876 interval 9 TH num begin end exp.num. dist. mismatch site sequence TD 1 328 332 4.87598 0 0: 0 0 GGAAA 2 386 390 4.87598 0 0: 0 0 GGAAA 3 667 671 4.87598 0 0: 0 0 GGAAA 4 685 689 4.87598 0 0: 0 0 GGAAA 5 1682 1686 4.87598 0 0: 0 0 GGAAA 6 1917 1921 4.87598 0 0: 0 0 GGAAA 7 3092 3096 4.87598 0 0: 0 0 GGAAA 8 3218 3222 4.87598 0 0: 0 0 GGAAA 9 3555 3559 4.87598 0 0: 0 0 GGAAA 10 3761 3765 4.87598 0 0: 0 0 GGAAA AI 00000 2 chain 6 sites find / exp.num. 4.876 interval 9 TD 1 245 241 4.87598 0 0: 0 0 GGAAA 2 1126 1122 4.87598 0 0: 0 0 GGAAA 3 2002 1998 4.87598 0 0: 0 0 GGAAA 4 3511 3507 4.87598 0 0: 0 0 GGAAA 5 3699 3695 4.87598 0 0: 0 0 GGAAA 6 4971 4967 4.87598 0 0: 0 0 GGAAA NM **** 6.(5) POLY A SINGLE BLOCK SQ AATAAA CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. 1.219 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 1732 1737 1.21875 0 0: 0 0 AATAAA 2 4975 4980 1.21875 0 0: 0 0 AATAAA AI 00000 2 chain 2 sites find / exp.num. 1.219 interval 3 TD 1 473 468 1.21875 0 0: 0 0 AATAAA 2 3953 3948 1.21875 0 0: 0 0 AATAAA NM **** 8.(14b) One of two related variants of a presumed transcription termi SQ tatgt CC max mismatch : 0 AI 00000 1 chain 4 sites find / exp.num. 4.876 interval 9 TH num begin end exp.num. dist. mismatch site sequence TD 1 1377 1381 4.87598 0 0: 0 0 TATGT 2 1611 1615 4.87598 0 0: 0 0 TATGT 3 1794 1798 4.87598 0 0: 0 0 TATGT 4 4863 4867 4.87598 0 0: 0 0 TATGT AI 00000 2 chain 8 sites find / exp.num. 4.876 interval 9 TD 1 1290 1286 4.87598 0 0: 0 0 TATGT 2 1741 1737 4.87598 0 0: 0 0 TATGT 3 2130 2126 4.87598 0 0: 0 0 TATGT 4 2793 2789 4.87598 0 0: 0 0 TATGT 5 3048 3044 4.87598 0 0: 0 0 TATGT 6 4075 4071 4.87598 0 0: 0 0 TATGT 7 4338 4334 4.87598 0 0: 0 0 TATGT 8 4966 4962 4.87598 0 0: 0 0 TATGT NM **** 9.(9) PRIMER REVERSE TRANSCRIPTION SQ TGGngzntygncygggax CC max mismatch : 3 AI 00000 1 chain 1 sites find / exp.num. .226 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1312 1329 .22641 0 3: 3 0 TGGCGCAATGCCCAGGTT NM **** 15.(22) SAR A BOX OF DROSOFILA j mol biol v198 n 4 p677 &cell v46 n4 SQ aataaayaaa CC max mismatch : 1 AI 00000 1 chain 3 sites find / exp.num. .276 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 959 968 .27590 0 1: 1 0 AATCAACAAA 2 1732 1741 .27590 0 1: 1 0 AATAAACATA 3 4975 4984 .27590 0 1: 1 0 AATAAAAAAA NM **** 16.(23) SAR T BOX OF DROSOFILA cell v46 n4 p521 SQ TtXTxTTXtt AI 00000 2 chain 14 sites find / exp.num. .495 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 4984 4975 .03806 0 0: 0 0 TTTTTTTATT 2 4985 4976 .49472 0 1: 1 0 TTTTTTTTAT 3 4986 4977 .49472 0 1: 1 0 TTTTTTTTTA 4 4987 4978 .03806 0 0: 0 0 TTTTTTTTTT 5 4988 4979 .03806 0 0: 0 0 TTTTTTTTTT 6 4989 4980 .03806 0 0: 0 0 TTTTTTTTTT 7 4990 4981 .03806 0 0: 0 0 TTTTTTTTTT 8 4991 4982 .03806 0 0: 0 0 TTTTTTTTTT 9 4992 4983 .03806 0 0: 0 0 TTTTTTTTTT 10 4993 4984 .03806 0 0: 0 0 TTTTTTTTTT 11 4994 4985 .03806 0 0: 0 0 TTTTTTTTTT 12 4995 4986 .03806 0 0: 0 0 TTTTTTTTTT 13 4996 4987 .03806 0 0: 0 0 TTTTTTTTTT 14 4997 4988 .03806 0 0: 0 0 TTTTTTTTTT NM **** 17(30). initiation of translation in genes of animals SQ zaannatgg CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .609 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 321 329 .60901 0 0: 0 0 GAATTATGG NM **** 54(2). POLIMERASE II -80 SQ yrrrccjcaccctg CC max mismatch : 2 AI 00000 1 chain 1 sites find / exp.num. .428 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 3982 3995 .00089 0 0: 0 0 TAGGCCCCACCCTG NM **** 59(10). EXON-INTRON JUNCTION SQ mAGGtragt AI 00000 2 chain 1 sites find / exp.num. .076 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 4508 4500 .07613 0 0: 0 0 CAGGTGAGT NM **** 60(11). INTRON-EXON JUNCTION SQ yyyyynyAGG AI 00000 2 chain 1 sites find / exp.num. 1.218 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 3767 3758 1.21777 0 0: 0 0 CTTTTCCAGG NM **** 61(12). lar+3' SQ YTaAT-yyyyaG AI 00000 2 chain 1 sites find / exp.num. .795 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 1856 1820 .79484 26 0: 0 0 TTAATagtagcagttgctctaaattgagatcCTTTAG NM **** 71(31).sequence repeated nontandemly several times in the origin of t SQ gcctc CC max mismatch : 0 AI 00000 1 chain 7 sites find / exp.num. 4.876 interval 9 TH num begin end exp.num. dist. mismatch site sequence TD 1 820 824 4.87598 0 0: 0 0 GCCTC 2 981 985 4.87598 0 0: 0 0 GCCTC 3 1639 1643 4.87598 0 0: 0 0 GCCTC 4 1747 1751 4.87598 0 0: 0 0 GCCTC 5 2244 2248 4.87598 0 0: 0 0 GCCTC 6 2285 2289 4.87598 0 0: 0 0 GCCTC 7 2950 2954 4.87598 0 0: 0 0 GCCTC AI 00000 2 chain 6 sites find / exp.num. 4.876 interval 9 TD 1 1705 1701 4.87598 0 0: 0 0 GCCTC 2 1791 1787 4.87598 0 0: 0 0 GCCTC 3 2504 2500 4.87598 0 0: 0 0 GCCTC 4 3200 3196 4.87598 0 0: 0 0 GCCTC 5 3757 3753 4.87598 0 0: 0 0 GCCTC 6 4123 4119 4.87598 0 0: 0 0 GCCTC NM **** 79(10a).consensus sequence near the 3'-ends of the adenovirus 2 genes SQ gggttcgaancc CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .040 interval 0 TH num begin end exp.num. dist. mismatch site sequence TD 1 1270 1281 .04042 0 1: 1 0 GGTTTCGAAGCC AI 00000 2 chain 1 sites find / exp.num. .040 interval 0 TD 1 1281 1270 .04042 0 1: 1 0 GGCTTCGAAACC NM **** 80(11a).consensus sequence near the 3'-ends of the adenovirus 2 genes SQ gggttg CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. 1.219 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 3733 3738 1.21875 0 0: 0 0 GGGTTG NM **** 82(13a).consensus sequence near the 3'-ends of the adenovirus 2 genes SQ ttgggg AI 00000 2 chain 2 sites find / exp.num. 1.219 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 3971 3966 1.21875 0 0: 0 0 TTGGGG 2 4843 4838 1.21875 0 0: 0 0 TTGGGG NM **** 85(16a).one of two suggested consensus sequences for RNA-polymerase I SQ ggttgg CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. 1.219 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 624 629 1.21875 0 0: 0 0 GGTTGG AI 00000 2 chain 1 sites find / exp.num. 1.219 interval 3 TD 1 2054 2049 1.21875 0 0: 0 0 GGTTGG NM **** 96(27a).Promotor of RNA polymerase III of gene VA1 of virus AD2 SQ tccgtggtctggtgg-accgggttcg CC distance between two blocks of site: min = 33 max = 37 CC max mismatch in 1-st block: 4, in 2-nd block: 3 AI 00000 1 chain 1 sites find / exp.num. .010 interval 0 TH num begin end exp.num. dist. mismatch site sequence TD 1 1124 1184 .00998 36 7: 4 3 TCCGTGCAGTGGTGAaacacttaacatcgttgaactgtcaattctggcatcACCAGCTTAG NM **** 99(31a).putative regulatory sequence(promoter element) present in SQ gggnggrr AI 00000 2 chain 1 sites find / exp.num. 1.218 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 3993 3986 1.21826 0 0: 0 0 GGGTGGGG NM **** 103(36a).consensus sequence of a tentative transcription initiation SQ aagtta CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. 1.219 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 97 102 1.21875 0 0: 0 0 AAGTTA NM **** 104(37a).sequence frequently found in the promoter region of histone SQ ccgca CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. 4.876 interval 9 TH num begin end exp.num. dist. mismatch site sequence TD 1 3206 3210 4.87598 0 0: 0 0 CCGCA AI 00000 2 chain 4 sites find / exp.num. 4.876 interval 9 TD 1 2168 2164 4.87598 0 0: 0 0 CCGCA 2 3306 3302 4.87598 0 0: 0 0 CCGCA 3 4014 4010 4.87598 0 0: 0 0 CCGCA 4 4494 4490 4.87598 0 0: 0 0 CCGCA NM **** 110(3b).2nd binding-region of big T-antigene in begining of SQ tggagaaaaagaagagaggcttccacaggcaa CC max mismatch : 12 AI 00000 1 chain 1 sites find / exp.num. .040 interval 0 TH num begin end exp.num. dist. mismatch site sequence TD 1 2475 2506 .03965 0 12:12 0 TGGGGCAACTCAAGAGCCTGTGCAAGAGGCAA NM **** 114(7b).Termination of transcription of RNA polymerase I of mouse SQ aggtcgaccagxxntccg AI 00000 2 chain 1 sites find / exp.num. .176 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 2018 2001 .17553 0 4: 4 0 ACCTGGACCAGTTCTCGG NM **** 118(12b).Preferential site of transcription termination in yeast gene SQ caaqctttg AI 00000 2 chain 1 sites find / exp.num. .038 interval 0 TH num begin end exp.num. dist. mismatch site sequence TD 1 376 368 .03806 0 0: 0 0 CAAGCTTTG NM **** 122(17b).‘onsensus sequence of a putative second polyadenylation sign SQ ttttcactgc CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .147 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 4003 4012 .14746 0 1: 1 0 TCTTCACTGC NM **** 125(23b).Consensus mRNA cap site in Drosophila Cell 29,1027 (Gnomic) SQ yatcxgq CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. 2.437 interval 5 TH num begin end exp.num. dist. mismatch site sequence TD 1 3465 3471 2.43701 0 0: 0 0 TATCTGG AI 00000 2 chain 2 sites find / exp.num. 2.437 interval 5 TD 1 1651 1645 2.43701 0 0: 0 0 TATCAGT 2 3111 3105 2.43701 0 0: 0 0 CATCAGT NM **** 126(24b)."Cap box";one of a number of homology blocks at the 5'-ends SQ ycattcr CC max mismatch : 0 AI 00000 1 chain 3 sites find / exp.num. 1.219 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 758 764 1.21851 0 0: 0 0 CCATTCG 2 4228 4234 1.21851 0 0: 0 0 CCATTCG 3 4356 4362 1.21851 0 0: 0 0 TCATTCA AI 00000 2 chain 1 sites find / exp.num. 1.219 interval 3 TD 1 2533 2527 1.21851 0 0: 0 0 CCATTCG NM **** 131(29b).Site of splising of vertebrates 3'-end: PNAS (1984) V 81 N 2 SQ yyyyyncagg AI 00000 2 chain 1 sites find / exp.num. .609 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 3767 3758 .60889 0 0: 0 0 CTTTTCCAGG NM **** 134(35b).Site of splising of plants 3'-end: NAR (1986) V 14 N 24 P 95 SQ tttkttkkkktgcagg AI 00000 2 chain 1 sites find / exp.num. .165 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 4985 4970 .16540 0 2: 2 0 TTTTTTTTATTAAAGG NM **** 135(37b).Conservative blocks in selfsplising introns 1 group A: SQ augcuggaaa CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .147 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 3618 3627 .14746 0 1: 1 0 ATGCTGGAGA AI 00000 2 chain 2 sites find / exp.num. .147 interval 1 TD 1 17 8 .14746 0 1: 1 0 ATGCTGGACA 2 1866 1857 .14746 0 1: 1 0 ATGCTGGGAA NM **** 19(5). SECOND MOTIF OF Ad5 E1a SQ zgcgxaa AI 00000 2 chain 2 sites find / exp.num. 1.219 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 89 83 1.21851 0 0: 0 0 CGCGAAA 2 3749 3743 1.21851 0 0: 0 0 CGCGAAA NM **** 20(7). DECAMER FROM IMMUNOGLOBULIN GENES SQ AtGCAAAtna AI 00000 2 chain 1 sites find / exp.num. .190 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 2705 2696 .01903 0 0: 0 0 ATGCAAATCA NM **** 25(25). LVa MOTIF MoMuLV ENHANCER (Mol Cell Biol v7 n3 p1101) SQ gaacag CC max mismatch : 0 AI 00000 1 chain 3 sites find / exp.num. 1.219 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 951 956 1.21875 0 0: 0 0 GAACAG 2 1027 1032 1.21875 0 0: 0 0 GAACAG 3 2818 2823 1.21875 0 0: 0 0 GAACAG AI 00000 2 chain 2 sites find / exp.num. 1.219 interval 3 TD 1 1714 1709 1.21875 0 0: 0 0 GAACAG 2 3875 3870 1.21875 0 0: 0 0 GAACAG NM **** 26(27). LVc MOTIF MoMuLV ENHANCER (Mol Cell Biol v7 n3 p1101) SQ cctgc CC max mismatch : 0 AI 00000 1 chain 7 sites find / exp.num. 4.876 interval 9 TH num begin end exp.num. dist. mismatch site sequence TD 1 200 204 4.87598 0 0: 0 0 CCTGC 2 406 410 4.87598 0 0: 0 0 CCTGC 3 530 534 4.87598 0 0: 0 0 CCTGC 4 2734 2738 4.87598 0 0: 0 0 CCTGC 5 3491 3495 4.87598 0 0: 0 0 CCTGC 6 4108 4112 4.87598 0 0: 0 0 CCTGC 7 4766 4770 4.87598 0 0: 0 0 CCTGC AI 00000 2 chain 6 sites find / exp.num. 4.876 interval 9 TD 1 781 777 4.87598 0 0: 0 0 CCTGC 2 1975 1971 4.87598 0 0: 0 0 CCTGC 3 2446 2442 4.87598 0 0: 0 0 CCTGC 4 2517 2513 4.87598 0 0: 0 0 CCTGC 5 3196 3192 4.87598 0 0: 0 0 CCTGC 6 4949 4945 4.87598 0 0: 0 0 CCTGC NM **** 27(33). LYSOZYME SILENCER 4 (EMBO j v6 n8 p2298) SQ atnnAgtaaaa CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .476 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 1677 1687 .47560 0 1: 1 0 ATTAAGGAAAA NM **** 31(48).Enchanser region of virus LPV SQ aagtctgcanagtctgca CC max mismatch : 5 AI 00000 1 chain 2 sites find / exp.num. .497 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 661 678 .49745 0 5: 5 0 ATGGCTGGAAAGGCTGCT 2 1652 1669 .06157 0 4: 4 0 AAGACTGCCCAGTCAGGA NM **** 35(63).enhancer core SV40 SQ tGTGgxxx CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .609 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 2906 2913 .60913 0 0: 0 0 TGTGGAAT NM **** 147(10). PNAS v84 n11 p3658 H21.3.9 HCMV site2 SQ tggc-gccca CC distance between two blocks of site: min = 5 max = 5 CC max mismatch in 1-st block: 0, in 2-nd block: 1 AI 00000 1 chain 1 sites find / exp.num. .304 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1312 1325 .01901 5 0: 0 0 TGGCgcaatGCCCA NM **** 155(21). TC ELEMENT SV40 SQ tccccag CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. .305 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 2279 2285 .30463 0 0: 0 0 TCCCCAG 2 3863 3869 .30463 0 0: 0 0 TCCCCAG NM **** 156(22). Sph ELEMENT SV40 SQ raagyatgc AI 00000 2 chain 1 sites find / exp.num. .076 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1259 1251 .07613 0 0: 0 0 AAAGCATGC NM **** 158(26). LVb MOTIF MoMuLV ENHANCER (Mol Cell Biol v7 n3 p1101) SQ caggata AI 00000 2 chain 1 sites find / exp.num. .305 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 2864 2858 .30463 0 0: 0 0 CAGGATA NM **** 162(31). lysozyme silencer 2 (EMBO J v6 n8 p2298) SQ antcTcctcc AI 00000 2 chain 2 sites find / exp.num. .476 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 1980 1971 .47569 0 1: 1 0 AGTCTCCTGC 2 2454 2445 .01903 0 0: 0 0 AGTCTCCTCC NM **** 163(32). LYSOZYME SILENCER 3 (EMBO J v6 n8 p2298) SQ ancaaTgGct CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .419 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 648 657 .41861 0 1: 1 0 TACAATGGCT NM **** 166(37).Consensus enchanser region of virus SV40 SQ rrtgtggxxx CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .152 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 2904 2913 .15222 0 0: 0 0 AATGTGGAAT NM **** 170(41).Block C of enchanser of virus SV40 SQ tgtggaaagtcccca CC max mismatch : 3 AI 00000 1 chain 1 sites find / exp.num. .062 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1005 1019 .06161 0 3: 3 0 TGTTGACAATCCCCA NM **** 180(55).Conservative elements of Ig enchanser (E1,E2,E3,E4,OCTA) SQ atttgcat CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .076 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 2698 2705 .07614 0 0: 0 0 ATTTGCAT NM **** 182(58).Conservative elements of Ig enchanser (B,E1,E2,E3) SQ ggcaggtggc CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .147 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 3191 3200 .14746 0 1: 1 0 GGCAGGAGGC NM **** 184(61).Putative enhancer core sequence of SV40 SQ ggagtggaaag CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .040 interval 0 TH num begin end exp.num. dist. mismatch site sequence TD 1 362 372 .04043 0 1: 1 0 GGAGTGCAAAG NM **** 36(10). NF1-FACtOR SQ tgg-gccaa AI 00000 2 chain 1 sites find / exp.num. .152 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1325 1311 .15208 7 0: 0 0 TGGgcattgcGCCAA NM **** 38(18). AP4 FACTOR Nature v332 1988 p557 SQ yCAGCtgygG CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .228 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 2324 2333 .22833 0 1: 1 0 TCAGCTGCAG NM **** 39(26). NFY SQ ccaat CC max mismatch : 0 AI 00000 1 chain 3 sites find / exp.num. 4.876 interval 9 TH num begin end exp.num. dist. mismatch site sequence TD 1 1727 1731 4.87598 0 0: 0 0 CCAAT 2 3034 3038 4.87598 0 0: 0 0 CCAAT 3 3686 3690 4.87598 0 0: 0 0 CCAAT AI 00000 2 chain 4 sites find / exp.num. 4.876 interval 9 TD 1 475 471 4.87598 0 0: 0 0 CCAAT 2 1027 1023 4.87598 0 0: 0 0 CCAAT 3 1314 1310 4.87598 0 0: 0 0 CCAAT 4 4388 4384 4.87598 0 0: 0 0 CCAAT NM **** 40(2). CRF FACTOR(CCAAT-BOX BINDING FACTOR) SQ tnnnCCatnnC CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. 1.218 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 2212 2222 1.21753 0 0: 0 0 TCTTCCATCCC AI 00000 2 chain 1 sites find / exp.num. 1.218 interval 3 TD 1 896 886 1.21753 0 0: 0 0 TGCTCCATAAC NM **** 187(2.) CRF FACTOR(CCAAT-BOX BINDING FACTOR) SQ tnnnCCatnnC CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. 1.218 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 2212 2222 1.21753 0 0: 0 0 TCTTCCATCCC AI 00000 2 chain 1 sites find / exp.num. 1.218 interval 3 TD 1 896 886 1.21753 0 0: 0 0 TGCTCCATAAC NM **** 188(3). USF II FACTOR OF ADENOVIRUS SQ tgacgca CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .305 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 2782 2788 .30463 0 0: 0 0 TGACGCA AI 00000 2 chain 1 sites find / exp.num. .305 interval 1 TD 1 447 441 .30463 0 0: 0 0 TGACGCA NM **** 189(4). ADENOVIRUS E2F FACtOR SQ tttcgcgc CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .076 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 3743 3750 .07614 0 0: 0 0 TTTCGCGC NM **** 191(6). E4F1 PROTEIN OF ADENOVIRUS SQ aCGTMAc CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .609 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 4748 4754 .60925 0 0: 0 0 ACGTCAC NM **** 192(7). LARGE T PROTEIN OF PAPILLOMA VIRUS SQ xgrggc CC max mismatch : 0 AI 00000 1 chain 9 sites find / exp.num. 4.875 interval 9 TH num begin end exp.num. dist. mismatch site sequence TD 1 596 601 4.87500 0 0: 0 0 TGGGGC 2 1786 1791 4.87500 0 0: 0 0 AGAGGC 3 2091 2096 4.87500 0 0: 0 0 AGGGGC 4 2240 2245 4.87500 0 0: 0 0 TGGGGC 5 2341 2346 4.87500 0 0: 0 0 AGGGGC 6 2475 2480 4.87500 0 0: 0 0 TGGGGC 7 2499 2504 4.87500 0 0: 0 0 AGAGGC 8 3752 3757 4.87500 0 0: 0 0 AGAGGC 9 4553 4558 4.87500 0 0: 0 0 TGGGGC AI 00000 2 chain 5 sites find / exp.num. 4.875 interval 9 TD 1 202 197 4.87500 0 0: 0 0 AGGGGC 2 1752 1747 4.87500 0 0: 0 0 AGAGGC 3 2249 2244 4.87500 0 0: 0 0 TGAGGC 4 2955 2950 4.87500 0 0: 0 0 TGAGGC 5 3990 3985 4.87500 0 0: 0 0 TGGGGC NM **** 193(8). RPG FACTOR SQ tgg-cca CC distance between two blocks of site: min = 7 max = 7 CC max mismatch in 1-st block: 0, in 2-nd block: 0 AI 00000 1 chain 1 sites find / exp.num. 1.217 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 4147 4159 1.21704 7 0: 0 0 TGGacgcattCCA AI 00000 2 chain 1 sites find / exp.num. 1.217 interval 3 TD 1 4159 4147 1.21704 7 0: 0 0 TGGaatgcgtCCA NM **** 195(12). AP1-FACTOR SQ tgaztcag AI 00000 2 chain 1 sites find / exp.num. .152 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 2159 2152 .15228 0 0: 0 0 TGACTCAG NM **** 202(22).Consensus sequence of the cAMP-CRP(cyclic AMP complex with it SQ aaagtgtgaca AI 00000 2 chain 1 sites find / exp.num. .040 interval 0 TH num begin end exp.num. dist. mismatch site sequence TD 1 1514 1504 .04043 0 1: 1 0 AAAATGTGACA NM **** 203(23).Consensus sequence for cAMP receptor protein (CRP or CAP) SQ aantgtganntnnnnca CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .147 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1156 1172 .14726 0 1: 1 0 AACTGTCAATTCTGGCA NM **** 204(24).Consensus dc sequence essential for correct transcription of SQ tnatttgcat CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .019 interval 0 TH num begin end exp.num. dist. mismatch site sequence TD 1 2696 2705 .01903 0 0: 0 0 TGATTTGCAT NM **** 209(30).Site of initiation of translation in genes of animals SQ zaannatgg CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .609 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 321 329 .60901 0 0: 0 0 GAATTATGG NM **** 44(10). HEAVY METALL RESPONSIVE ELEMENT SQ tgCrcyc CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. 1.219 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 2257 2263 1.21851 0 0: 0 0 TGCGCTC AI 00000 2 chain 2 sites find / exp.num. 1.219 interval 3 TD 1 369 363 1.21851 0 0: 0 0 TGCACTC 2 3906 3900 1.21851 0 0: 0 0 TGCGCCC NM **** 47(14). GLUCOCORTICOID RESPONSIVE ELEMENT SQ gnnjCj-tGttCt CC distance between two blocks of site: min = 2 max = 4 CC max mismatch in 1-st block: 0, in 2-nd block: 0 AI 00000 1 chain 1 sites find / exp.num. .128 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 2343 2356 .12831 2 0: 0 0 GGGCCTgtTGTTCT NM **** 48(33).Consensus sequence of the recognition sites for the glucocorti SQ tgttct CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. 1.219 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 2351 2356 1.21875 0 0: 0 0 TGTTCT 2 3977 3982 1.21875 0 0: 0 0 TGTTCT AI 00000 2 chain 1 sites find / exp.num. 1.219 interval 3 TD 1 3724 3719 1.21875 0 0: 0 0 TGTTCT NM **** 218(16).Consensus binding site of gormone-receptor's complex of gluco SQ zggtxcamnntgtyct AI 00000 2 chain 1 sites find / exp.num. .168 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 939 924 .16807 0 2: 2 0 CGGTACATCTTCTTCT NM **** 230(31).Consensus sequense of several binding sites of the glucocorti SQ gnnacaanntgtyct CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .076 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 4402 4416 .07603 0 1: 1 0 GCAATAAGCTGTCCT NM **** 235(4). CCCAC-BOX BINDING FACTOR SQ cccac CC max mismatch : 0 AI 00000 1 chain 4 sites find / exp.num. 4.876 interval 9 TH num begin end exp.num. dist. mismatch site sequence TD 1 1016 1020 4.87598 0 0: 0 0 CCCAC 2 2372 2376 4.87598 0 0: 0 0 CCCAC 3 2726 2730 4.87598 0 0: 0 0 CCCAC 4 3987 3991 4.87598 0 0: 0 0 CCCAC AI 00000 2 chain 4 sites find / exp.num. 4.876 interval 9 TD 1 599 595 4.87598 0 0: 0 0 CCCAC 2 2243 2239 4.87598 0 0: 0 0 CCCAC 3 2478 2474 4.87598 0 0: 0 0 CCCAC 4 3502 3498 4.87598 0 0: 0 0 CCCAC NM **** 236(5). GG.Ar.CC BOX BINDING FACTOR SQ GGxxxxxxCC CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .304 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1917 1926 .30444 0 0: 0 0 GGAAAAATCC AI 00000 2 chain 1 sites find / exp.num. .304 interval 1 TD 1 1926 1917 .30444 0 0: 0 0 GGATTTTTCC NM **** 240(9). MHC X-BOX SQ cccaGmraGxgatg CC max mismatch : 2 AI 00000 1 chain 1 sites find / exp.num. .065 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 2376 2389 .06521 0 2: 2 0 CCTAGAGAGCGATG NM **** 241(10). MHC Y-BOX SQ tqCtgattGGytmm CC max mismatch : 2 AI 00000 1 chain 1 sites find / exp.num. .091 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1305 1318 .09061 0 2: 2 0 GGCTGATTGGCGCA NM **** 246(15). NF-GMB PROTEIN FOR CYTOKIN 2 SPECIFIC SEQUENCE SQ tyaggrta AI 00000 2 chain 1 sites find / exp.num. .305 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 2865 2858 .30457 0 0: 0 0 TCAGGATA NM **** 249(18). MYOSIN ALKALI LIGHT CHAIN SPECIFIC ELEMENT 2 (NAR v16 n21 p1 SQ cccCCacCc CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .362 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 3985 3993 .36160 0 1: 1 0 GCCCCACCC NM **** 250(19). HISTONE H2B SPECIFIC ELEMENT (Cell v50 n3 p347) SQ ctcatttgcatac CC max mismatch : 2 AI 00000 1 chain 1 sites find / exp.num. .055 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 2695 2707 .05512 0 2: 2 0 CTGATTTGCATGC NM **** 252(21). RIBOSOMAL PROTEIN SPECIFIC MOTIF (JBC v263 n33 p17772) SQ cttccg CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. 1.219 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 4914 4919 1.21875 0 0: 0 0 CTTCCG NM **** 253(22).cycle histone MCB 85 5 2 380 389 SQ GAYTTC CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. 2.438 interval 5 TH num begin end exp.num. dist. mismatch site sequence TD 1 2607 2612 2.43750 0 0: 0 0 GACTTC AI 00000 2 chain 1 sites find / exp.num. 2.438 interval 5 TD 1 2522 2517 2.43750 0 0: 0 0 GACTTC NM **** 254(23). cycle cell 86 45 4 537 544 trt1 SQ GCGAAA AI 00000 2 chain 2 sites find / exp.num. 1.219 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 88 83 1.21875 0 0: 0 0 GCGAAA 2 3748 3743 1.21875 0 0: 0 0 GCGAAA NM **** 257(26).Regulated element of gene LSP of D.melanogaster EMBO J (1985) V 4 N P 3789 H SQ aaaytaaagctggt CC max mismatch : 3 AI 00000 1 chain 1 sites find / exp.num. .342 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 425 438 .34185 0 3: 3 0 AAATTATAGCTAGC AI 00000 2 chain 1 sites find / exp.num. .342 interval 1 TD 1 533 520 .34185 0 3: 3 0 CAGGTAAAGCTGGT NM **** 258(27).Regulating element of promotor of contractive(KONTRAKTILNIY) SQ cattcct AI 00000 2 chain 1 sites find / exp.num. .305 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 4165 4159 .30463 0 0: 0 0 CATTCCT NM **** 260(29).Regurating site of histone genes SQ ctnatttgcata CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .040 interval 0 TH num begin end exp.num. dist. mismatch site sequence TD 1 2695 2706 .04042 0 1: 1 0 CTGATTTGCATG NM **** 262(31).Consensus sequence of transcription regulation sites near SQ cytttgcryycg CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .138 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 3271 3282 .13790 0 1: 1 0 CCTTTGCGCCGG NM **** 263(32).Sequence repeated 5 times in the promoter of the mouse SQ gaaga CC max mismatch : 0 AI 00000 1 chain 11 sites find / exp.num. 4.876 interval 9 TH num begin end exp.num. dist. mismatch site sequence TD 1 925 929 4.87598 0 0: 0 0 GAAGA 2 928 932 4.87598 0 0: 0 0 GAAGA 3 1186 1190 4.87598 0 0: 0 0 GAAGA 4 1407 1411 4.87598 0 0: 0 0 GAAGA 5 1478 1482 4.87598 0 0: 0 0 GAAGA 6 2100 2104 4.87598 0 0: 0 0 GAAGA 7 2977 2981 4.87598 0 0: 0 0 GAAGA 8 4330 4334 4.87598 0 0: 0 0 GAAGA 9 4544 4548 4.87598 0 0: 0 0 GAAGA 10 4735 4739 4.87598 0 0: 0 0 GAAGA 11 4738 4742 4.87598 0 0: 0 0 GAAGA AI 00000 2 chain 7 sites find / exp.num. 4.876 interval 9 TD 1 1754 1750 4.87598 0 0: 0 0 GAAGA 2 2216 2212 4.87598 0 0: 0 0 GAAGA 3 2691 2687 4.87598 0 0: 0 0 GAAGA 4 3315 3311 4.87598 0 0: 0 0 GAAGA 5 3837 3833 4.87598 0 0: 0 0 GAAGA 6 4007 4003 4.87598 0 0: 0 0 GAAGA 7 4886 4882 4.87598 0 0: 0 0 GAAGA NM **** 265(34).Consensus sequence of a putative transcription control elemen SQ tcccgcm AI 00000 2 chain 1 sites find / exp.num. .609 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 2170 2164 .60925 0 0: 0 0 TCCCGCA NM **** 268(37).Consensus sequence of repeated hexanucleotides within the 5'- SQ aarqga CC max mismatch : 0 AI 00000 1 chain 8 sites find / exp.num. 4.875 interval 9 TH num begin end exp.num. dist. mismatch site sequence TD 1 47 52 4.87500 0 0: 0 0 AAGTGA 2 682 687 4.87500 0 0: 0 0 AAGGGA 3 1213 1218 4.87500 0 0: 0 0 AAGGGA 4 1685 1690 4.87500 0 0: 0 0 AAATGA 5 1822 1827 4.87500 0 0: 0 0 AAAGGA 6 2038 2043 4.87500 0 0: 0 0 AAATGA 7 3368 3373 4.87500 0 0: 0 0 AAAGGA 8 4378 4383 4.87500 0 0: 0 0 AAATGA AI 00000 2 chain 2 sites find / exp.num. 4.875 interval 9 TD 1 248 243 4.87500 0 0: 0 0 AAGGGA 2 4974 4969 4.87500 0 0: 0 0 AAAGGA NM **** 271(41).Sequence frequently found in the promoter region of histone H SQ cgcac CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. 4.876 interval 9 TH num begin end exp.num. dist. mismatch site sequence TD 1 3207 3211 4.87598 0 0: 0 0 CGCAC AI 00000 2 chain 5 sites find / exp.num. 4.876 interval 9 TD 1 444 440 4.87598 0 0: 0 0 CGCAC 2 1048 1044 4.87598 0 0: 0 0 CGCAC 3 1564 1560 4.87598 0 0: 0 0 CGCAC 4 2260 2256 4.87598 0 0: 0 0 CGCAC 5 4593 4589 4.87598 0 0: 0 0 CGCAC NM **** 274(44).Sequence frequently found in the promoter region of histone H SQ gtcacgnncccctgcaataact AI 00000 2 chain 1 sites find / exp.num. .019 interval 0 TH num begin end exp.num. dist. mismatch site sequence TD 1 2527 2506 .01897 0 5: 5 0 GCAACGACTTCCTGCAATACCT