ID DMMGD1 DE D.melanogaster mgd1 retrotransposon DNA NM POLIMERASE II SQ tATAaa CC max mismatch : 0 AI 00000 1 chain 10 sites find / exp.num. 1.825 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 318 323 1.82495 0 0: 0 0 TATAAA 2 620 625 1.82495 0 0: 0 0 TATAAA 3 1707 1712 1.82495 0 0: 0 0 TATAAA 4 1809 1814 1.82495 0 0: 0 0 TATAAA 5 2982 2987 1.82495 0 0: 0 0 TATAAA 6 3673 3678 1.82495 0 0: 0 0 TATAAA 7 5281 5286 1.82495 0 0: 0 0 TATAAA 8 5536 5541 1.82495 0 0: 0 0 TATAAA 9 6065 6070 1.82495 0 0: 0 0 TATAAA 10 7356 7361 1.82495 0 0: 0 0 TATAAA AI 00000 2 chain 3 sites find / exp.num. 1.825 interval 4 TD 1 1476 1471 1.82495 0 0: 0 0 TATAAA 2 1710 1705 1.82495 0 0: 0 0 TATAAA 3 3100 3095 1.82495 0 0: 0 0 TATAAA NM Inr (ripl.POLIMERASE II) SQ NTCAQTY CC max mismatch : 0 AI 00000 1 chain 13 sites find / exp.num. 7.299 interval 12 TH num begin end exp.num. dist. mismatch site sequence TD 1 312 318 7.29883 0 0: 0 0 ATCAGTT 2 1418 1424 7.29883 0 0: 0 0 TTCAGTC 3 1466 1472 7.29883 0 0: 0 0 CTCAGTT 4 1936 1942 7.29883 0 0: 0 0 ATCATTT 5 2459 2465 7.29883 0 0: 0 0 ATCAGTT 6 3249 3255 7.29883 0 0: 0 0 TTCAGTC 7 3551 3557 7.29883 0 0: 0 0 CTCATTC 8 5486 5492 7.29883 0 0: 0 0 ATCATTC 9 5924 5930 7.29883 0 0: 0 0 ATCATTT 10 5983 5989 7.29883 0 0: 0 0 ATCAGTT 11 6935 6941 7.29883 0 0: 0 0 ATCATTC 12 6939 6945 7.29883 0 0: 0 0 TTCATTT 13 7350 7356 7.29883 0 0: 0 0 ATCAGTT AI 00000 2 chain 16 sites find / exp.num. 7.299 interval 12 TD 1 382 376 7.29883 0 0: 0 0 GTCATTT 2 935 929 7.29883 0 0: 0 0 CTCATTT 3 1656 1650 7.29883 0 0: 0 0 TTCATTC 4 2221 2215 7.29883 0 0: 0 0 GTCATTT 5 2423 2417 7.29883 0 0: 0 0 TTCATTT 6 2758 2752 7.29883 0 0: 0 0 GTCATTT 7 3646 3640 7.29883 0 0: 0 0 TTCAGTT 8 3889 3883 7.29883 0 0: 0 0 GTCATTT 9 4326 4320 7.29883 0 0: 0 0 ATCATTC 10 5079 5073 7.29883 0 0: 0 0 CTCATTC 11 5272 5266 7.29883 0 0: 0 0 CTCATTT 12 5626 5620 7.29883 0 0: 0 0 ATCATTT 13 5718 5712 7.29883 0 0: 0 0 TTCATTT 14 5745 5739 7.29883 0 0: 0 0 GTCATTC 15 5911 5905 7.29883 0 0: 0 0 CTCATTT 16 7420 7414 7.29883 0 0: 0 0 GTCATTT NM "TATA box";one of a number of homology blocks at the 5'-ends SQ gtataaaatag AI 00000 2 chain 1 sites find / exp.num. .061 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 661 651 .06055 0 1: 1 0 GTATATAATAG NM n=55;found upstream from the promoter of the pheasant conalbu- SQ ggaaa CC max mismatch : 0 AI 00000 1 chain 18 sites find / exp.num. 7.301 interval 12 TH num begin end exp.num. dist. mismatch site sequence TD 1 489 493 7.30078 0 0: 0 0 GGAAA 2 591 595 7.30078 0 0: 0 0 GGAAA 3 935 939 7.30078 0 0: 0 0 GGAAA 4 1204 1208 7.30078 0 0: 0 0 GGAAA 5 1918 1922 7.30078 0 0: 0 0 GGAAA 6 2204 2208 7.30078 0 0: 0 0 GGAAA 7 2697 2701 7.30078 0 0: 0 0 GGAAA 8 2823 2827 7.30078 0 0: 0 0 GGAAA 9 2853 2857 7.30078 0 0: 0 0 GGAAA 10 2907 2911 7.30078 0 0: 0 0 GGAAA 11 3023 3027 7.30078 0 0: 0 0 GGAAA 12 4054 4058 7.30078 0 0: 0 0 GGAAA 13 4752 4756 7.30078 0 0: 0 0 GGAAA 14 5124 5128 7.30078 0 0: 0 0 GGAAA 15 5378 5382 7.30078 0 0: 0 0 GGAAA 16 5709 5713 7.30078 0 0: 0 0 GGAAA 17 5903 5907 7.30078 0 0: 0 0 GGAAA 18 6614 6618 7.30078 0 0: 0 0 GGAAA AI 00000 2 chain 3 sites find / exp.num. 7.301 interval 12 TD 1 3166 3162 7.30078 0 0: 0 0 GGAAA 2 3336 3332 7.30078 0 0: 0 0 GGAAA 3 3771 3767 7.30078 0 0: 0 0 GGAAA NM POLY A SINGLE BLOCK SQ AATAAA CC max mismatch : 0 AI 00000 1 chain 37 sites find / exp.num. 1.825 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 355 360 1.82495 0 0: 0 0 AATAAA 2 366 371 1.82495 0 0: 0 0 AATAAA 3 776 781 1.82495 0 0: 0 0 AATAAA 4 1057 1062 1.82495 0 0: 0 0 AATAAA 5 1265 1270 1.82495 0 0: 0 0 AATAAA 6 1283 1288 1.82495 0 0: 0 0 AATAAA 7 1310 1315 1.82495 0 0: 0 0 AATAAA 8 1506 1511 1.82495 0 0: 0 0 AATAAA 9 2099 2104 1.82495 0 0: 0 0 AATAAA 10 2441 2446 1.82495 0 0: 0 0 AATAAA 11 3058 3063 1.82495 0 0: 0 0 AATAAA 12 3967 3972 1.82495 0 0: 0 0 AATAAA 13 4090 4095 1.82495 0 0: 0 0 AATAAA 14 4567 4572 1.82495 0 0: 0 0 AATAAA 15 4963 4968 1.82495 0 0: 0 0 AATAAA 16 5182 5187 1.82495 0 0: 0 0 AATAAA 17 5476 5481 1.82495 0 0: 0 0 AATAAA 18 5561 5566 1.82495 0 0: 0 0 AATAAA 19 5635 5640 1.82495 0 0: 0 0 AATAAA 20 5969 5974 1.82495 0 0: 0 0 AATAAA 21 6617 6622 1.82495 0 0: 0 0 AATAAA 22 6623 6628 1.82495 0 0: 0 0 AATAAA 23 6701 6706 1.82495 0 0: 0 0 AATAAA 24 6715 6720 1.82495 0 0: 0 0 AATAAA 25 6729 6734 1.82495 0 0: 0 0 AATAAA 26 6743 6748 1.82495 0 0: 0 0 AATAAA 27 6757 6762 1.82495 0 0: 0 0 AATAAA 28 6771 6776 1.82495 0 0: 0 0 AATAAA 29 6785 6790 1.82495 0 0: 0 0 AATAAA 30 6799 6804 1.82495 0 0: 0 0 AATAAA 31 6813 6818 1.82495 0 0: 0 0 AATAAA 32 6827 6832 1.82495 0 0: 0 0 AATAAA 33 6842 6847 1.82495 0 0: 0 0 AATAAA 34 6847 6852 1.82495 0 0: 0 0 AATAAA 35 6857 6862 1.82495 0 0: 0 0 AATAAA 36 7393 7398 1.82495 0 0: 0 0 AATAAA 37 7404 7409 1.82495 0 0: 0 0 AATAAA AI 00000 2 chain 6 sites find / exp.num. 1.825 interval 4 TD 1 405 400 1.82495 0 0: 0 0 AATAAA 2 1631 1626 1.82495 0 0: 0 0 AATAAA 3 4648 4643 1.82495 0 0: 0 0 AATAAA 4 5420 5415 1.82495 0 0: 0 0 AATAAA 5 6016 6011 1.82495 0 0: 0 0 AATAAA 6 7443 7438 1.82495 0 0: 0 0 AATAAA NM POLY A SIGNAL SQ AATAMA-ygtgttyy CC distance between two blocks of site: min = 20 max = 30 CC max mismatch in 1-st block: 0, in 2-nd block: 1 AI 00000 1 chain 2 sites find / exp.num. .093 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 355 394 .09271 26 1: 0 1 AATAAAaaccaaataaagataaaatgaccaacTGCGTTTT 2 7393 7432 .09271 26 1: 0 1 AATAAAaaccaaataaagataaaatgaccaacTGCGTTTT NM One of two related variants of a presumed transcription termi SQ tatgt CC max mismatch : 0 AI 00000 1 chain 7 sites find / exp.num. 7.301 interval 12 TH num begin end exp.num. dist. mismatch site sequence TD 1 1486 1490 7.30078 0 0: 0 0 TATGT 2 2247 2251 7.30078 0 0: 0 0 TATGT 3 4443 4447 7.30078 0 0: 0 0 TATGT 4 5333 5337 7.30078 0 0: 0 0 TATGT 5 5762 5766 7.30078 0 0: 0 0 TATGT 6 6185 6189 7.30078 0 0: 0 0 TATGT 7 6433 6437 7.30078 0 0: 0 0 TATGT AI 00000 2 chain 16 sites find / exp.num. 7.301 interval 12 TD 1 243 239 7.30078 0 0: 0 0 TATGT 2 247 243 7.30078 0 0: 0 0 TATGT 3 618 614 7.30078 0 0: 0 0 TATGT 4 644 640 7.30078 0 0: 0 0 TATGT 5 894 890 7.30078 0 0: 0 0 TATGT 6 922 918 7.30078 0 0: 0 0 TATGT 7 1252 1248 7.30078 0 0: 0 0 TATGT 8 2738 2734 7.30078 0 0: 0 0 TATGT 9 3017 3013 7.30078 0 0: 0 0 TATGT 10 3036 3032 7.30078 0 0: 0 0 TATGT 11 3451 3447 7.30078 0 0: 0 0 TATGT 12 3470 3466 7.30078 0 0: 0 0 TATGT 13 4457 4453 7.30078 0 0: 0 0 TATGT 14 5810 5806 7.30078 0 0: 0 0 TATGT 15 7281 7277 7.30078 0 0: 0 0 TATGT 16 7285 7281 7.30078 0 0: 0 0 TATGT NM ORI HUM SQ taaatttagt AI 00000 2 chain 1 sites find / exp.num. .221 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 3274 3265 .22087 0 1: 1 0 TAAATGTAGT NM HSV ORI SQ atatatatat CC max mismatch : 1 AI 00000 1 chain 4 sites find / exp.num. .221 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 6196 6205 .22087 0 1: 1 0 ATATATATCT 2 6904 6913 .22087 0 1: 1 0 AAATATATAT 3 6906 6915 .00712 0 0: 0 0 ATATATATAT 4 6908 6917 .22087 0 1: 1 0 ATATATATTT AI 00000 2 chain 4 sites find / exp.num. .221 interval 1 TD 1 6205 6196 .22087 0 1: 1 0 AGATATATAT 2 6913 6904 .22087 0 1: 1 0 ATATATATTT 3 6915 6906 .00712 0 0: 0 0 ATATATATAT 4 6917 6908 .22087 0 1: 1 0 AAATATATAT NM ARS Y XE DM SQ xtttatrtttx CC max mismatch : 1 AI 00000 1 chain 3 sites find / exp.num. .399 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 1623 1633 .39894 0 1: 1 0 ATTTTTATTTT 2 1625 1635 .39894 0 1: 1 0 TTTTATTTTTA 3 6908 6918 .39894 0 1: 1 0 ATATATATTTT AI 00000 2 chain 14 sites find / exp.num. .399 interval 2 TD 1 378 368 .39894 0 1: 1 0 TTTTATCTTTA 2 626 616 .39894 0 1: 1 0 TTTTATATTAT 3 1291 1281 .39894 0 1: 1 0 TTTTTTATTTT 4 1316 1306 .39894 0 1: 1 0 TTTTATTTTTT 5 1318 1308 .39894 0 1: 1 0 ATTTTTATTTT 6 1324 1314 .39894 0 1: 1 0 TTGTATATTTT 7 2988 2978 .39894 0 1: 1 0 TTTTATAGTTA 8 3679 3669 .39894 0 1: 1 0 TTTTATATTTG 9 5287 5277 .01425 0 0: 0 0 TTTTATATTTT 10 5584 5574 .39894 0 1: 1 0 TTTTAAATTTT 11 6629 6619 .39894 0 1: 1 0 TTTTATTTTTA 12 6631 6621 .39894 0 1: 1 0 TTTTTTATTTT 13 6913 6903 .39894 0 1: 1 0 ATATATATTTT 14 7416 7406 .39894 0 1: 1 0 TTTTATCTTTA NM ARS yeast, xenopus SQ xttttatrtttx CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .110 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1624 1635 .11041 0 1: 1 0 TTTTTATTTTTA AI 00000 2 chain 10 sites find / exp.num. .110 interval 1 TD 1 379 368 .11041 0 1: 1 0 ATTTTATCTTTA 2 627 616 .11041 0 1: 1 0 TTTTTATATTAT 3 1292 1281 .11041 0 1: 1 0 TTTTTTTATTTT 4 1317 1306 .11041 0 1: 1 0 TTTTTATTTTTT 5 1325 1314 .11041 0 1: 1 0 TTTGTATATTTT 6 3680 3669 .11041 0 1: 1 0 TTTTTATATTTG 7 5288 5277 .00356 0 0: 0 0 TTTTTATATTTT 8 5585 5574 .11041 0 1: 1 0 TTTTTAAATTTT 9 6630 6619 .11041 0 1: 1 0 TTTTTATTTTTA 10 7417 7406 .11041 0 1: 1 0 ATTTTATCTTTA NM SAR A BOX OF DROSOFILA j mol biol v198 n 4 p677 &cell v46 n4 SQ aataaayaaa CC max mismatch : 1 AI 00000 1 chain 11 sites find / exp.num. .413 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 94 103 .41324 0 1: 1 0 AATAAGTAAA 2 791 800 .41324 0 1: 1 0 AATTAACAAA 3 1265 1274 .41324 0 1: 1 0 AATAAACCAA 4 1283 1292 .41324 0 1: 1 0 AATAAAAAAA 5 1306 1315 .41324 0 1: 1 0 AAAAAATAAA 6 1316 1325 .41324 0 1: 1 0 AATATACAAA 7 3963 3972 .41324 0 1: 1 0 AATTAATAAA 8 4090 4099 .41324 0 1: 1 0 AATAAACAAG 9 5182 5191 .41324 0 1: 1 0 AATAAATAGA 10 6827 6836 .41324 0 1: 1 0 AATAAAAAAA 11 7132 7141 .41324 0 1: 1 0 AATAAGTAAA AI 00000 2 chain 1 sites find / exp.num. .413 interval 2 TD 1 6251 6242 .41324 0 1: 1 0 AATAAGTAAA NM SAR T BOX OF DROSOFILA cell v46 n4 p521 SQ TtXTxTTXtt CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .057 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1625 1634 .05700 0 0: 0 0 TTTTATTTTT AI 00000 2 chain 50 sites find / exp.num. .057 interval 1 TD 1 1063 1054 .05700 0 0: 0 0 TTTTATTTTT 2 1235 1226 .05700 0 0: 0 0 TTTTTTTTTT 3 1236 1227 .05700 0 0: 0 0 TTTTTTTTTT 4 1237 1228 .05700 0 0: 0 0 TTTTTTTTTT 5 1238 1229 .05700 0 0: 0 0 TTTTTTTTTT 6 1239 1230 .05700 0 0: 0 0 TTTTTTTTTT 7 1289 1280 .05700 0 0: 0 0 TTTTATTTTT 8 1292 1283 .05700 0 0: 0 0 TTTTTTTATT 9 1295 1286 .05700 0 0: 0 0 TTTTTTTTTT 10 1296 1287 .05700 0 0: 0 0 TTTTTTTTTT 11 1297 1288 .05700 0 0: 0 0 TTTTTTTTTT 12 1298 1289 .05700 0 0: 0 0 TTTTTTTTTT 13 1299 1290 .05700 0 0: 0 0 TTTTTTTTTT 14 1300 1291 .05700 0 0: 0 0 TTTTTTTTTT 15 1301 1292 .05700 0 0: 0 0 TTTTTTTTTT 16 1302 1293 .05700 0 0: 0 0 TTTTTTTTTT 17 1303 1294 .05700 0 0: 0 0 TTTTTTTTTT 18 1304 1295 .05700 0 0: 0 0 TTTTTTTTTT 19 1305 1296 .05700 0 0: 0 0 TTTTTTTTTT 20 1306 1297 .05700 0 0: 0 0 TTTTTTTTTT 21 1307 1298 .05700 0 0: 0 0 TTTTTTTTTT 22 1308 1299 .05700 0 0: 0 0 TTTTTTTTTT 23 1309 1300 .05700 0 0: 0 0 TTTTTTTTTT 24 1310 1301 .05700 0 0: 0 0 TTTTTTTTTT 25 1311 1302 .05700 0 0: 0 0 TTTTTTTTTT 26 1314 1305 .05700 0 0: 0 0 TTATTTTTTT 27 1316 1307 .05700 0 0: 0 0 TTTTATTTTT 28 1566 1557 .05700 0 0: 0 0 TTTTTTTTTT 29 1567 1558 .05700 0 0: 0 0 TTTTTTTTTT 30 1568 1559 .05700 0 0: 0 0 TTTTTTTTTT 31 1569 1560 .05700 0 0: 0 0 TTTTTTTTTT 32 1570 1561 .05700 0 0: 0 0 TTTTTTTTTT 33 1571 1562 .05700 0 0: 0 0 TTTTTTTTTT 34 1572 1563 .05700 0 0: 0 0 TTTTTTTTTT 35 1573 1564 .05700 0 0: 0 0 TTTTTTTTTT 36 1574 1565 .05700 0 0: 0 0 TTTTTTTTTT 37 1575 1566 .05700 0 0: 0 0 TTTTTTTTTT 38 1576 1567 .05700 0 0: 0 0 TTTTTTTTTT 39 1577 1568 .05700 0 0: 0 0 TTTTTTTTTT 40 1578 1569 .05700 0 0: 0 0 TTTTTTTTTT 41 1579 1570 .05700 0 0: 0 0 TTTTTTTTTT 42 1580 1571 .05700 0 0: 0 0 TTTTTTTTTT 43 1581 1572 .05700 0 0: 0 0 TTTTTTTTTT 44 1582 1573 .05700 0 0: 0 0 TTTTTTTTTT 45 1583 1574 .05700 0 0: 0 0 TTTTTTTTTT 46 1584 1575 .05700 0 0: 0 0 TTTTTTTTTT 47 1585 1576 .05700 0 0: 0 0 TTTTTTTTTT 48 1586 1577 .05700 0 0: 0 0 TTTTTTTTTT 49 1587 1578 .05700 0 0: 0 0 TTTTTTTTTT 50 1664 1655 .05700 0 0: 0 0 TTTTTTTTTT NM initiation of translation in genes of animals SQ zaannatgg CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. .912 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 1168 1176 .91211 0 0: 0 0 GAAGAATGG 2 1322 1330 .91211 0 0: 0 0 CAAAAATGG NM optimal sequence for initiation of translation by eukaryotik SQ accatgg CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .456 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 2899 2905 .45618 0 0: 0 0 ACCATGG AI 00000 2 chain 1 sites find / exp.num. .456 interval 2 TD 1 2906 2900 .45618 0 0: 0 0 ACCATGG NM ANIMAL POLIMERASE II SQ ggycaatct-tataxax AI 00000 2 chain 1 sites find / exp.num. .278 interval 0 TH num begin end exp.num. dist. mismatch site sequence TD 1 1178 1114 .27832 49 2: 1 1 GGCCATTCTtctcatcgggcagaaaaagttccgctcaatgttacaatattttgtgtaaTATTAAT NM INTRON-EXON JUNCTION SQ yyyyynyAGG AI 00000 2 chain 1 sites find / exp.num. 1.824 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 5713 5704 1.82397 0 0: 0 0 TTTCCTCAGG NM lar+3' SQ YTaAT-yyyyaG CC distance between two blocks of site: min = 16 max = 36 CC max mismatch in 1-st block: 0, in 2-nd block: 0 AI 00000 1 chain 10 sites find / exp.num. 1.193 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 92 127 1.19266 25 0: 0 0 CTAATaagtaaacttaggaccaccctaattCCTTAG 2 92 138 1.19266 36 0: 0 0 CTAATaagtaaacttaggaccaccctaattccttagggtcaCCCTAG 3 116 149 1.19266 23 0: 0 0 CTAATtccttagggtcaccctagtagatCTTTAG 4 157 195 1.19266 28 0: 0 0 CTAATactaaatatgcgaattcaggatgtacgcCTTTAG 5 3965 4001 1.19266 26 0: 0 0 TTAATaaaagatggcattgtcgaacaatctaTTTCAG 6 4757 4794 1.19266 27 0: 0 0 TTAATgaaaccaacactccttcagtacccagaTTTCAG 7 7130 7165 1.19266 25 0: 0 0 CTAATaagtaaacttaggaccaccctaattCCTTAG 8 7130 7176 1.19266 36 0: 0 0 CTAATaagtaaacttaggaccaccctaattccttagggtcaCCCTAG 9 7154 7187 1.19266 23 0: 0 0 CTAATtccttagggtcaccctagtagatCTTTAG 10 7195 7233 1.19266 28 0: 0 0 CTAATactaaatatgcgaattcaggatgtacgcCTTTAG AI 00000 2 chain 1 sites find / exp.num. 1.193 interval 3 TD 1 5597 5570 1.19266 17 0: 0 0 TTAATagcgctatttttaaattTTTTAG NM ARS-fragment of chlamydomonada SQ raattttaaat CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .114 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 6657 6667 .11398 0 1: 1 0 AAATTTTTAAT AI 00000 2 chain 2 sites find / exp.num. .114 interval 1 TD 1 1626 1616 .11398 0 1: 1 0 AAATTTTAGAT 2 4468 4458 .11398 0 1: 1 0 TAATTTTAAAT NM ARS of chloroplasts SQ anrtnaccaagt CC max mismatch : 1 AI 00000 1 chain 4 sites find / exp.num. .413 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 376 387 .41313 0 1: 1 0 AAATGACCAACT 2 5501 5512 .41313 0 1: 1 0 TTGTCACCAAGT 3 6311 6322 .41313 0 1: 1 0 AGATTACCAAGA 4 7414 7425 .41313 0 1: 1 0 AAATGACCAACT NM ARS of human SQ tattyytaaatttagtxt CC max mismatch : 4 AI 00000 1 chain 1 sites find / exp.num. .145 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1622 1639 .14482 0 4: 4 0 AATTTTTATTTTTAATAT AI 00000 2 chain 14 sites find / exp.num. .145 interval 1 TD 1 61 44 .14482 0 4: 4 0 TATTATTAATATTATTAT 2 177 160 .14482 0 4: 4 0 AATTCGCATATTTAGTAT 3 1319 1302 .14482 0 4: 4 0 TATTTTTATTTTTTTTTT 4 1661 1644 .14482 0 4: 4 0 TTTTTTTCATTCTAGTTT 5 3094 3077 .14482 0 4: 4 0 AATGCTTAAATTGAGATT 6 3280 3263 .01424 0 3: 3 0 CATTTCTAAATGTAGTGT 7 4468 4451 .14482 0 4: 4 0 TAATTTTAAATTATGTTG 8 5212 5195 .14482 0 4: 4 0 TGTTGTTACCTTTAGTAT 9 5290 5273 .14482 0 4: 4 0 CATTTTTATATTTTCTTT 10 5587 5570 .01424 0 3: 3 0 TATTTTTAAATTTTTTAG 11 6412 6395 .14482 0 4: 4 0 TATTTCTAATCGTAGCTT 12 6971 6954 .14482 0 4: 4 0 TTTTTTTAAATGTACATT 13 7099 7082 .14482 0 4: 4 0 TATTATTAATATTATTAT 14 7215 7198 .14482 0 4: 4 0 AATTCGCATATTTAGTAT NM sequence repeated nontandemly several times in the origin of t SQ gcctc AI 00000 2 chain 6 sites find / exp.num. 7.301 interval 12 TH num begin end exp.num. dist. mismatch site sequence TD 1 1516 1512 7.30078 0 0: 0 0 GCCTC 2 1699 1695 7.30078 0 0: 0 0 GCCTC 3 2888 2884 7.30078 0 0: 0 0 GCCTC 4 3431 3427 7.30078 0 0: 0 0 GCCTC 5 4685 4681 7.30078 0 0: 0 0 GCCTC 6 5683 5679 7.30078 0 0: 0 0 GCCTC NM consensus sequence of the cores of autonomously replicating SQ xaaayataaax CC max mismatch : 1 AI 00000 1 chain 14 sites find / exp.num. .399 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 368 378 .39894 0 1: 1 0 TAAAGATAAAA 2 616 626 .39894 0 1: 1 0 ATAATATAAAA 3 1281 1291 .39894 0 1: 1 0 AAAATAAAAAA 4 1306 1316 .39894 0 1: 1 0 AAAAAATAAAA 5 1308 1318 .39894 0 1: 1 0 AAAATAAAAAT 6 1314 1324 .39894 0 1: 1 0 AAAATATACAA 7 2978 2988 .39894 0 1: 1 0 TAACTATAAAA 8 3669 3679 .39894 0 1: 1 0 CAAATATAAAA 9 5277 5287 .01425 0 0: 0 0 AAAATATAAAA 10 5574 5584 .39894 0 1: 1 0 AAAATTTAAAA 11 6619 6629 .39894 0 1: 1 0 TAAAAATAAAA 12 6621 6631 .39894 0 1: 1 0 AAAATAAAAAA 13 6903 6913 .39894 0 1: 1 0 AAAATATATAT 14 7406 7416 .39894 0 1: 1 0 TAAAGATAAAA AI 00000 2 chain 3 sites find / exp.num. .399 interval 2 TD 1 1633 1623 .39894 0 1: 1 0 AAAATAAAAAT 2 1635 1625 .39894 0 1: 1 0 TAAAAATAAAA 3 6918 6908 .39894 0 1: 1 0 AAAATATATAT NM Promotor of RNA polymerase 1 (mouse, rat) SQ atcttt-tattg AI 00000 2 chain 2 sites find / exp.num. .135 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 2296 2269 .13504 17 1: 1 0 AACTTTttgccgtcaaactcaggTATTG 2 5586 5560 .13504 16 1: 1 0 ATTTTTaaattttttagtatttTATTG NM Promotor of RNA polymerase 1 (human) SQ atcttt-ttttgg AI 00000 2 chain 1 sites find / exp.num. .042 interval 0 TH num begin end exp.num. dist. mismatch site sequence TD 1 1728 1699 .04218 18 1: 1 0 ATCTATgcaatcgaactttataaaTTTTGG NM consensus sequence near the 3'-ends of the adenovirus 2 genes SQ gggttg CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. 1.825 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 1329 1334 1.82495 0 0: 0 0 GGGTTG 2 2565 2570 1.82495 0 0: 0 0 GGGTTG AI 00000 2 chain 1 sites find / exp.num. 1.825 interval 4 TD 1 1003 998 1.82495 0 0: 0 0 GGGTTG NM consensus sequence near the 3'-ends of the adenovirus 2 genes SQ gggttttg AI 00000 2 chain 1 sites find / exp.num. .114 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1279 1272 .11403 0 0: 0 0 GGGTTTTG NM consensus sequence near the 3'-ends of the adenovirus 2 genes SQ ttgggg AI 00000 2 chain 3 sites find / exp.num. 1.825 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 680 675 1.82495 0 0: 0 0 TTGGGG 2 4307 4302 1.82495 0 0: 0 0 TTGGGG 3 4584 4579 1.82495 0 0: 0 0 TTGGGG NM one of two suggested consensus sequences for RNA-polymerase I SQ ggttgg CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. 1.825 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 1330 1335 1.82495 0 0: 0 0 GGTTGG 2 6686 6691 1.82495 0 0: 0 0 GGTTGG AI 00000 2 chain 3 sites find / exp.num. 1.825 interval 4 TD 1 1002 997 1.82495 0 0: 0 0 GGTTGG 2 3563 3558 1.82495 0 0: 0 0 GGTTGG 3 6697 6692 1.82495 0 0: 0 0 GGTTGG NM one of two suggested consensus sequences for RNA-polymerase I SQ ggttttgg AI 00000 2 chain 2 sites find / exp.num. .114 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1278 1271 .11403 0 0: 0 0 GGTTTTGG 2 2976 2969 .11403 0 0: 0 0 GGTTTTGG NM consensus sequence of human mitochondrial promoters SQ canaccccaaagaya CC max mismatch : 2 AI 00000 1 chain 1 sites find / exp.num. .043 interval 0 TH num begin end exp.num. dist. mismatch site sequence TD 1 1272 1286 .04350 0 2: 2 0 CAAAACCCAAAAATA NM putative regulatory sequence(promoter element) present in SQ gggnggrr CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. 1.824 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 602 609 1.82446 0 0: 0 0 GGGCGGAG NM consensus of the TATA-box of Dictyostelium promoters SQ tataaaxa CC max mismatch : 0 AI 00000 1 chain 4 sites find / exp.num. .228 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 620 627 .22806 0 0: 0 0 TATAAAAA 2 3673 3680 .22806 0 0: 0 0 TATAAAAA 3 5281 5288 .22806 0 0: 0 0 TATAAAAA 4 6065 6072 .22806 0 0: 0 0 TATAAAAA AI 00000 2 chain 1 sites find / exp.num. .228 interval 1 TD 1 3100 3093 .22806 0 0: 0 0 TATAAAAA NM "Goldberg-Hogness box";consensus sequence belonging to eukar SQ tataxax CC max mismatch : 0 AI 00000 1 chain 11 sites find / exp.num. 1.825 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 318 324 1.82471 0 0: 0 0 TATAAAT 2 620 626 1.82471 0 0: 0 0 TATAAAA 3 1809 1815 1.82471 0 0: 0 0 TATAAAT 4 2982 2988 1.82471 0 0: 0 0 TATAAAA 5 3673 3679 1.82471 0 0: 0 0 TATAAAA 6 5281 5287 1.82471 0 0: 0 0 TATAAAA 7 6065 6071 1.82471 0 0: 0 0 TATAAAA 8 6197 6203 1.82471 0 0: 0 0 TATATAT 9 6907 6913 1.82471 0 0: 0 0 TATATAT 10 6909 6915 1.82471 0 0: 0 0 TATATAT 11 7356 7362 1.82471 0 0: 0 0 TATAAAT AI 00000 2 chain 8 sites find / exp.num. 1.825 interval 4 TD 1 660 654 1.82471 0 0: 0 0 TATATAA 2 1524 1518 1.82471 0 0: 0 0 TATATAA 3 1710 1704 1.82471 0 0: 0 0 TATAAAT 4 3100 3094 1.82471 0 0: 0 0 TATAAAA 5 6202 6196 1.82471 0 0: 0 0 TATATAT 6 6912 6906 1.82471 0 0: 0 0 TATATAT 7 6914 6908 1.82471 0 0: 0 0 TATATAT 8 6990 6984 1.82471 0 0: 0 0 TATATAA NM consensus sequence of a tentative transcription initiation SQ aagtta CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. 1.825 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 2292 2297 1.82495 0 0: 0 0 AAGTTA 2 6390 6395 1.82495 0 0: 0 0 AAGTTA AI 00000 2 chain 3 sites find / exp.num. 1.825 interval 4 TD 1 1391 1386 1.82495 0 0: 0 0 AAGTTA 2 6492 6487 1.82495 0 0: 0 0 AAGTTA 3 7004 6999 1.82495 0 0: 0 0 AAGTTA NM sequence frequently found in the promoter region of histone SQ ccgca CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. 7.301 interval 12 TH num begin end exp.num. dist. mismatch site sequence TD 1 879 883 7.30078 0 0: 0 0 CCGCA 2 2230 2234 7.30078 0 0: 0 0 CCGCA NM Binding-site for factor NFI, which stimulates replication SQ tggmn-gccaa CC distance between two blocks of site: min = 3 max = 6 CC max mismatch in 1-st block: 0, in 2-nd block: 0 AI 00000 1 chain 1 sites find / exp.num. .228 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1889 1901 .22786 3 0: 0 0 TGGAGcacGCCAA NM Sequence located at the 3'-ends of yeast genes,presumably SQ tttttata CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .114 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 3093 3100 .11403 0 0: 0 0 TTTTTATA AI 00000 2 chain 4 sites find / exp.num. .114 interval 1 TD 1 627 620 .11403 0 0: 0 0 TTTTTATA 2 3680 3673 .11403 0 0: 0 0 TTTTTATA 3 5288 5281 .11403 0 0: 0 0 TTTTTATA 4 6072 6065 .11403 0 0: 0 0 TTTTTATA NM One of two related variants of a presumed transcription term SQ tagtggtggtgggct AI 00000 2 chain 1 sites find / exp.num. .092 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 6141 6127 .09231 0 3: 3 0 TGGTGATGGTGTGCT NM Site of transcription termination mRNA in Hela cells SQ aaaaaaaaattaaaaataaaataaaataaaaaa CC max mismatch : 5 AI 00000 1 chain 1 sites find / exp.num. .000 interval 0 TH num begin end exp.num. dist. mismatch site sequence TD 1 1286 1318 .00000 0 5: 5 0 AAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAT NM Consensus of a presumed polyadenylation signal in Trypanosom SQ aaaattyt CC max mismatch : 0 AI 00000 1 chain 3 sites find / exp.num. .228 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1620 1627 .22806 0 0: 0 0 AAAATTTT 2 6006 6013 .22806 0 0: 0 0 AAAATTTT 3 6656 6663 .22806 0 0: 0 0 AAAATTTT AI 00000 2 chain 3 sites find / exp.num. .228 interval 1 TD 1 1627 1620 .22806 0 0: 0 0 AAAATTTT 2 6013 6006 .22806 0 0: 0 0 AAAATTTT 3 6663 6656 .22806 0 0: 0 0 AAAATTTT NM Signal of formiration 3'-end in mnRNA SQ gttyn-aaarryaga CC distance between two blocks of site: min = 0 max = 3 CC max mismatch in 1-st block: 0, in 2-nd block: 1 AI 00000 1 chain 1 sites find / exp.num. .157 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 4398 4412 .15663 1 1: 0 1 GTTCTgAAAAGCACA NM Consensus mRNA cap site in Drosophila Cell 29,1027 (Gnomic) SQ yatcxgq CC max mismatch : 0 AI 00000 1 chain 4 sites find / exp.num. 3.649 interval 7 TH num begin end exp.num. dist. mismatch site sequence TD 1 2458 2464 3.64941 0 0: 0 0 CATCAGT 2 3225 3231 3.64941 0 0: 0 0 TATCAGG 3 5300 5306 3.64941 0 0: 0 0 TATCAGG 4 6201 6207 3.64941 0 0: 0 0 TATCTGT AI 00000 2 chain 7 sites find / exp.num. 3.649 interval 7 TD 1 1018 1012 3.64941 0 0: 0 0 CATCTGG 2 1414 1408 3.64941 0 0: 0 0 CATCTGT 3 4192 4186 3.64941 0 0: 0 0 CATCAGG 4 4550 4544 3.64941 0 0: 0 0 CATCTGG 5 4820 4814 3.64941 0 0: 0 0 CATCTGT 6 5197 5191 3.64941 0 0: 0 0 TATCTGT 7 6637 6631 3.64941 0 0: 0 0 TATCTGT NM "Cap box";one of a number of homology blocks at the 5'-ends SQ ycattcr CC max mismatch : 0 AI 00000 1 chain 3 sites find / exp.num. 1.825 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 5487 5493 1.82471 0 0: 0 0 TCATTCA 2 5683 5689 1.82471 0 0: 0 0 CCATTCA 3 6936 6942 1.82471 0 0: 0 0 TCATTCA AI 00000 2 chain 2 sites find / exp.num. 1.825 interval 4 TD 1 4714 4708 1.82471 0 0: 0 0 CCATTCA 2 5744 5738 1.82471 0 0: 0 0 TCATTCG NM Sequence present near the 3'-ends of yeast mitochondrial gen SQ aagaatat CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .114 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 3107 3114 .11403 0 0: 0 0 AAGAATAT NM Consensus of a presumed transcription processing signal of m SQ ataatattctt CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .061 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1735 1745 .06055 0 1: 1 0 ATAGTATTCTT AI 00000 2 chain 1 sites find / exp.num. .061 interval 1 TD 1 6987 6977 .06055 0 1: 1 0 ATAATATTTTT NM Site of splising of vertebrates 3'-end: PNAS (1984) V 81 N 2 SQ yyyyyncagg AI 00000 2 chain 1 sites find / exp.num. .912 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 5713 5704 .91199 0 0: 0 0 TTTCCTCAGG NM Brunch : PNAS (1984) V 81 N 23 P 7417 H SQ uacuaac AI 00000 2 chain 1 sites find / exp.num. .456 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 3665 3659 .45618 0 0: 0 0 TACTAAC NM Conservative blocks in selfsplising introns 1 group A: SQ augcuggaaa CC max mismatch : 1 AI 00000 1 chain 2 sites find / exp.num. .221 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 2692 2701 .22087 0 1: 1 0 AAGCTGGAAA 2 2902 2911 .22087 0 1: 1 0 ATGGTGGAAA NM Conservative blocks in selfsplising introns 1 group box 9L: SQ tcagagactaca CC max mismatch : 2 AI 00000 1 chain 1 sites find / exp.num. .281 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 692 703 .28091 0 2: 2 0 TCAAAAACTACA NM Conservative blocks in selfsplising introns 1 group box 2: SQ aagatatagtcc CC max mismatch : 2 AI 00000 1 chain 1 sites find / exp.num. .281 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 6630 6641 .28091 0 2: 2 0 AACAGATAGTCC NM SECOND MOTIF OF Ad5 E1a SQ zgcgxaa CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. 1.825 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 4910 4916 1.82471 0 0: 0 0 GGCGAAA NM DECAMER FROM IMMUNOGLOBULIN GENES SQ AtGCAAAtna CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .285 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 6091 6100 .28500 0 1: 1 0 ATGCAAATAT NM Mol.Cel.Biol. v62 n8 p1925 E2-PROTEINE OF PAPILLOMPAVIRUS SQ acc-ggt CC distance between two blocks of site: min = 6 max = 6 CC max mismatch in 1-st block: 0, in 2-nd block: 0 AI 00000 1 chain 3 sites find / exp.num. 1.823 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 2427 2438 1.82349 6 0: 0 0 ACCattatcGGT 2 2557 2568 1.82349 6 0: 0 0 ACCtacgtgGGT 3 5237 5248 1.82349 6 0: 0 0 ACCtgcgcaGGT AI 00000 2 chain 3 sites find / exp.num. 1.823 interval 4 TD 1 2438 2427 1.82349 6 0: 0 0 ACCgataatGGT 2 2568 2557 1.82349 6 0: 0 0 ACCcacgtaGGT 3 5248 5237 1.82349 6 0: 0 0 ACCtgcgcaGGT NM EMBO J. v4 n10 p2669 H21.3.9 HSV-1/Herpesvirus samuiri SQ taatgarattc AI 00000 2 chain 1 sites find / exp.num. .114 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 3374 3364 .11398 0 1: 1 0 TAATGAAATCC NM LVa MOTIF MoMuLV ENHANCER (Mol Cell Biol v7 n3 p1101) SQ gaacag CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. 1.825 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 6150 6155 1.82495 0 0: 0 0 GAACAG AI 00000 2 chain 2 sites find / exp.num. 1.825 interval 4 TD 1 875 870 1.82495 0 0: 0 0 GAACAG 2 4401 4396 1.82495 0 0: 0 0 GAACAG NM LVc MOTIF MoMuLV ENHANCER (Mol Cell Biol v7 n3 p1101) SQ cctgc CC max mismatch : 0 AI 00000 1 chain 4 sites find / exp.num. 7.301 interval 12 TH num begin end exp.num. dist. mismatch site sequence TD 1 824 828 7.30078 0 0: 0 0 CCTGC 2 1079 1083 7.30078 0 0: 0 0 CCTGC 3 3166 3170 7.30078 0 0: 0 0 CCTGC 4 5238 5242 7.30078 0 0: 0 0 CCTGC AI 00000 2 chain 3 sites find / exp.num. 7.301 interval 12 TD 1 1025 1021 7.30078 0 0: 0 0 CCTGC 2 4940 4936 7.30078 0 0: 0 0 CCTGC 3 5247 5243 7.30078 0 0: 0 0 CCTGC NM INTERFERONE BETA ENHANCER (J.Mol Biol v204 n2 p221) SQ aaxanngaaaggr CC max mismatch : 1 AI 00000 1 chain 3 sites find / exp.num. .214 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 3232 3244 .21366 0 1: 1 0 AATAGGGCAAGGG 2 5898 5910 .21366 0 1: 1 0 AAAACGGAAATGA 3 6524 6536 .21366 0 1: 1 0 AAAAACGAAACGG NM Enchanser region of virus PV SQ gctgtgqttttgca AI 00000 2 chain 1 sites find / exp.num. .044 interval 0 TH num begin end exp.num. dist. mismatch site sequence TD 1 4818 4805 .04351 0 2: 2 0 TCTGTGGTTATGCA NM Enchanser region of virus MSV SQ tctgtggtaaag AI 00000 2 chain 1 sites find / exp.num. .281 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 4818 4807 .28091 0 2: 2 0 TCTGTGGTTATG NM Conservative elements of Ig enchanser (B,E1,E2,E3) SQ gccatctggc AI 00000 2 chain 1 sites find / exp.num. .221 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 4552 4543 .22087 0 1: 1 0 GTCATCTGGC NM enhancer core SV40 SQ tGTGgxxx CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .912 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 1427 1434 .91223 0 0: 0 0 TGTGGTTA AI 00000 2 chain 11 sites find / exp.num. .912 interval 3 TD 1 4816 4809 .91223 0 0: 0 0 TGTGGTTA 2 6714 6707 .91223 0 0: 0 0 TGTGGTTT 3 6728 6721 .91223 0 0: 0 0 TGTGGTTT 4 6742 6735 .91223 0 0: 0 0 TGTGGTTT 5 6756 6749 .91223 0 0: 0 0 TGTGGTTT 6 6770 6763 .91223 0 0: 0 0 TGTGGTTT 7 6784 6777 .91223 0 0: 0 0 TGTGGTTT 8 6798 6791 .91223 0 0: 0 0 TGTGGTTT 9 6812 6805 .91223 0 0: 0 0 TGTGGTTT 10 6826 6819 .91223 0 0: 0 0 TGTGGTTT 11 6841 6834 .91223 0 0: 0 0 TGTGGTTT NM LVb MOTIF MoMuLV ENHANCER (Mol Cell Biol v7 n3 p1101) SQ caggata CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .456 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 6340 6346 .45618 0 0: 0 0 CAGGATA NM Conservative elements of Ig enchanser (E1,E2,E3,E4,OCTA) SQ gtcatgtggc AI 00000 2 chain 1 sites find / exp.num. .221 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 4552 4543 .22087 0 1: 1 0 GTCATCTGGC NM Conservative elements of Ig enchanser (E1,E2,E3,E4,OCTA) SQ atttgcat AI 00000 2 chain 1 sites find / exp.num. .114 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 6098 6091 .11403 0 0: 0 0 ATTTGCAT NM Conservative elements of Ig enchanser (B,E1,E2,E3) SQ cccatgtggt CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .221 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1373 1382 .22087 0 1: 1 0 CCAATGTGGT NM NF1-FACtOR SQ tgg-gccaa CC distance between two blocks of site: min = 6 max = 7 CC max mismatch in 1-st block: 0, in 2-nd block: 0 AI 00000 1 chain 1 sites find / exp.num. .228 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 5878 5891 .22786 6 0: 0 0 TGGtccactGCCAA NM SP1 SQ gggcggr CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .912 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 602 608 .91235 0 0: 0 0 GGGCGGA NM NFY SQ ccaat CC max mismatch : 0 AI 00000 1 chain 9 sites find / exp.num. 7.301 interval 12 TH num begin end exp.num. dist. mismatch site sequence TD 1 677 681 7.30078 0 0: 0 0 CCAAT 2 811 815 7.30078 0 0: 0 0 CCAAT 3 1373 1377 7.30078 0 0: 0 0 CCAAT 4 1898 1902 7.30078 0 0: 0 0 CCAAT 5 3120 3124 7.30078 0 0: 0 0 CCAAT 6 5292 5296 7.30078 0 0: 0 0 CCAAT 7 5960 5964 7.30078 0 0: 0 0 CCAAT 8 6029 6033 7.30078 0 0: 0 0 CCAAT 9 6855 6859 7.30078 0 0: 0 0 CCAAT AI 00000 2 chain 9 sites find / exp.num. 7.301 interval 12 TD 1 218 214 7.30078 0 0: 0 0 CCAAT 2 1875 1871 7.30078 0 0: 0 0 CCAAT 3 2691 2687 7.30078 0 0: 0 0 CCAAT 4 3360 3356 7.30078 0 0: 0 0 CCAAT 5 3418 3414 7.30078 0 0: 0 0 CCAAT 6 3692 3688 7.30078 0 0: 0 0 CCAAT 7 5880 5876 7.30078 0 0: 0 0 CCAAT 8 6223 6219 7.30078 0 0: 0 0 CCAAT 9 7256 7252 7.30078 0 0: 0 0 CCAAT NM CRF FACTOR(CCAAT-BOX BINDING FACTOR) SQ tnnnCCatnnC AI 00000 2 chain 3 sites find / exp.num. 1.824 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 595 585 1.82373 0 0: 0 0 TTTCCCATCAC 2 2852 2842 1.82373 0 0: 0 0 TCGGCCATTAC 3 3355 3345 1.82373 0 0: 0 0 TATACCATCCC NM USF II FACTOR OF ADENOVIRUS SQ tgacgca CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .456 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 1017 1023 .45618 0 0: 0 0 TGACGCA NM ADENOVIRUS EPF FACtOR SQ atgacgt AI 00000 2 chain 1 sites find / exp.num. .456 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 978 972 .45618 0 0: 0 0 ATGACGT NM LARGE T PROTEIN OF PAPILLOMA VIRUS SQ xgrggc CC max mismatch : 0 AI 00000 1 chain 5 sites find / exp.num. 7.300 interval 12 TH num begin end exp.num. dist. mismatch site sequence TD 1 600 605 7.29980 0 0: 0 0 AGGGGC 2 1511 1516 7.29980 0 0: 0 0 AGAGGC 3 1694 1699 7.29980 0 0: 0 0 AGAGGC 4 2883 2888 7.29980 0 0: 0 0 AGAGGC 5 3426 3431 7.29980 0 0: 0 0 TGAGGC AI 00000 2 chain 1 sites find / exp.num. 7.300 interval 12 TD 1 4306 4301 7.29980 0 0: 0 0 TGGGGC NM RPG FACTOR SQ tgg-cca CC distance between two blocks of site: min = 7 max = 7 CC max mismatch in 1-st block: 0, in 2-nd block: 0 AI 00000 1 chain 2 sites find / exp.num. 1.823 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 5878 5890 1.82324 7 0: 0 0 TGGtccactgCCA 2 6307 6319 1.82324 7 0: 0 0 TGGaagattaCCA AI 00000 2 chain 2 sites find / exp.num. 1.823 interval 4 TD 1 5890 5878 1.82324 7 0: 0 0 TGGcagtggaCCA 2 6319 6307 1.82324 7 0: 0 0 TGGtaatcttCCA NM Binding site for the human transcription factor Sp1 SQ gggcgg CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. 1.825 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 602 607 1.82495 0 0: 0 0 GGGCGG NM Site of initiation of translation in genes of animals SQ zaannatgg CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. .912 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 1168 1176 .91211 0 0: 0 0 GAAGAATGG 2 1322 1330 .91211 0 0: 0 0 CAAAAATGG NM Optimal sequence for initiation of translation by eukaryotik SQ accatgg CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .456 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 2899 2905 .45618 0 0: 0 0 ACCATGG AI 00000 2 chain 1 sites find / exp.num. .456 interval 2 TD 1 2906 2900 .45618 0 0: 0 0 ACCATGG NM Consensus sequence for eukaryotic translation initiation site SQ ccrccatgg AI 00000 2 chain 1 sites find / exp.num. .057 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 2908 2900 .05701 0 0: 0 0 CCACCATGG NM HEAt-SHOSK RESPONSIVE ELEMENT SQ ttcnngaa CC max mismatch : 0 TD 00000 1 chain 6 sites find / exp.num. 1.824 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 834 841 1.82446 0 0: 0 0 TTCAAGAA 2 3440 3447 1.82446 0 0: 0 0 TTCAGGAA 3 4891 4898 1.82446 0 0: 0 0 TTCAAGAA 4 5686 5693 1.82446 0 0: 0 0 TTCAGGAA 5 5695 5702 1.82446 0 0: 0 0 TTCTAGAA 6 6276 6283 1.82446 0 0: 0 0 TTCATGAA AI 00000 2 chain 6 sites find / exp.num. 1.824 interval 4 TD 1 841 834 1.82446 0 0: 0 0 TTCTTGAA 2 3447 3440 1.82446 0 0: 0 0 TTCCTGAA 3 4898 4891 1.82446 0 0: 0 0 TTCTTGAA 4 5693 5686 1.82446 0 0: 0 0 TTCCTGAA 5 5702 5695 1.82446 0 0: 0 0 TTCTAGAA 6 6283 6276 1.82446 0 0: 0 0 TTCATGAA NM Heat-shock induction site A SQ cnngaanttcnng CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .114 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 5688 5700 .11395 0 0: 0 0 CAGGAATTTCTAG AI 00000 2 chain 1 sites find / exp.num. .114 interval 1 TD 1 5700 5688 .11395 0 0: 0 0 CTAGAAATTCCTG NM HEAVY METALL RESPONSIVE ELEMENT SQ tgCrcyc CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. 1.825 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 3595 3601 1.82471 0 0: 0 0 TGCACTC NM SRE ELEMENT OF HSP70 pnas v84 n8 p2203 H21.30 SQ aagggaaaag CC max mismatch : 1 AI 00000 1 chain 3 sites find / exp.num. .221 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1915 1924 .22087 0 1: 1 0 AAAGGAAAAG 2 5120 5129 .22087 0 1: 1 0 AAGGGGAAAG 3 6443 6452 .22087 0 1: 1 0 AAGGCAAAAG NM GLUCOCORTICOID RESPONSIVE ELEMENT SQ gnnjCj-tGttCt CC distance between two blocks of site: min = 2 max = 4 CC max mismatch in 1-st block: 0, in 2-nd block: 0 AI 00000 1 chain 1 sites find / exp.num. .192 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 3539 3552 .19224 2 0: 0 0 GACACAcaTGTTCT NM Consensus sequence of the recognition sites for the glucocorti SQ tgttct CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. 1.825 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 3547 3552 1.82495 0 0: 0 0 TGTTCT 2 4397 4402 1.82495 0 0: 0 0 TGTTCT NM INTERFERONE GAMMA RESPONSIVE ELEMENT SQ agaagnmag CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .228 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 5467 5475 .22803 0 0: 0 0 AGAAGCAAG NM Consensus of putative activator sequence of immediate early SQ taatgarat CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. .057 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 3478 3486 .05701 0 0: 0 0 TAATGAAAT 2 5422 5430 .05701 0 0: 0 0 TAATGAAAT AI 00000 2 chain 1 sites find / exp.num. .057 interval 1 TD 1 3374 3366 .05701 0 0: 0 0 TAATGAAAT NM PEA1 FACTOR (TPA inducible) (nature v332 n6161 p275) SQ gtgactaa CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .114 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 5603 5610 .11403 0 0: 0 0 GTGACTAA NM Element of promotor of interferone GAMMA SQ aagtgtaat-gagtnnnct CC distance between two blocks of site: min = 4 max = 7 CC max mismatch in 1-st block: 2, in 2-nd block: 1 AI 00000 1 chain 1 sites find / exp.num. .186 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 2934 2958 .18580 7 3: 2 1 AATTATAATagaggtgGAGGTTACT NM LIVER-SPECIFIC FACtOR SQ TCntacTC AI 00000 2 chain 2 sites find / exp.num. .456 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 231 224 .45612 0 0: 0 0 TCATACTC 2 7269 7262 .45612 0 0: 0 0 TCATACTC NM CCCAC-BOX BINDING FACTOR SQ cccac CC max mismatch : 0 AI 00000 1 chain 3 sites find / exp.num. 7.301 interval 12 TH num begin end exp.num. dist. mismatch site sequence TD 1 747 751 7.30078 0 0: 0 0 CCCAC 2 2998 3002 7.30078 0 0: 0 0 CCCAC 3 4120 4124 7.30078 0 0: 0 0 CCCAC AI 00000 2 chain 2 sites find / exp.num. 7.301 interval 12 TD 1 2567 2563 7.30078 0 0: 0 0 CCCAC 2 2666 2662 7.30078 0 0: 0 0 CCCAC NM GG.Ar.CC BOX BINDING FACTOR SQ GGxxxxxxCC CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .456 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 2823 2832 .45599 0 0: 0 0 GGAAATTACC AI 00000 2 chain 1 sites find / exp.num. .456 interval 2 TD 1 2832 2823 .45599 0 0: 0 0 GGTAATTTCC NM cycle histone MCB 85 5 2 380 389 SQ GAYTTC CC max mismatch : 0 AI 00000 1 chain 3 sites find / exp.num. 3.650 interval 7 TH num begin end exp.num. dist. mismatch site sequence TD 1 3365 3370 3.64990 0 0: 0 0 GATTTC 2 4197 4202 3.64990 0 0: 0 0 GATTTC 3 4787 4792 3.64990 0 0: 0 0 GATTTC AI 00000 2 chain 4 sites find / exp.num. 3.650 interval 7 TD 1 941 936 3.64990 0 0: 0 0 GATTTC 2 4038 4033 3.64990 0 0: 0 0 GATTTC 3 4668 4663 3.64990 0 0: 0 0 GATTTC 4 6167 6162 3.64990 0 0: 0 0 GACTTC NM cycle cell 86 45 4 537 544 trt1 SQ GCGAAA CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. 1.825 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 4911 4916 1.82495 0 0: 0 0 GCGAAA NM Regulated element of gene LSP of D.melanogaster EMBO J (1985) V 4 N P 3789 H SQ aaaytaaagctggt AI 00000 2 chain 1 sites find / exp.num. .044 interval 0 TH num begin end exp.num. dist. mismatch site sequence TD 1 6578 6565 .04351 0 2: 2 0 AAACTAAATATGGT NM Regulating element of promotor of contractive(KONTRAKTILNIY) SQ cattcct CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .456 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 3454 3460 .45618 0 0: 0 0 CATTCCT NM Sequence repeated 5 times in the promoter of the mouse SQ gaaga CC max mismatch : 0 AI 00000 1 chain 14 sites find / exp.num. 7.301 interval 12 TH num begin end exp.num. dist. mismatch site sequence TD 1 549 553 7.30078 0 0: 0 0 GAAGA 2 1168 1172 7.30078 0 0: 0 0 GAAGA 3 1677 1681 7.30078 0 0: 0 0 GAAGA 4 2106 2110 7.30078 0 0: 0 0 GAAGA 5 2163 2167 7.30078 0 0: 0 0 GAAGA 6 2166 2170 7.30078 0 0: 0 0 GAAGA 7 3106 3110 7.30078 0 0: 0 0 GAAGA 8 3410 3414 7.30078 0 0: 0 0 GAAGA 9 4136 4140 7.30078 0 0: 0 0 GAAGA 10 4638 4642 7.30078 0 0: 0 0 GAAGA 11 5465 5469 7.30078 0 0: 0 0 GAAGA 12 6103 6107 7.30078 0 0: 0 0 GAAGA 13 6309 6313 7.30078 0 0: 0 0 GAAGA 14 6420 6424 7.30078 0 0: 0 0 GAAGA AI 00000 2 chain 2 sites find / exp.num. 7.301 interval 12 TD 1 4019 4015 7.30078 0 0: 0 0 GAAGA 2 5524 5520 7.30078 0 0: 0 0 GAAGA NM "CCAAT box";one of a number of homology blocks at the 5'-ends SQ grccaatnr AI 00000 2 chain 1 sites find / exp.num. .456 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 5882 5874 .45605 0 0: 0 0 GACCAATGG NM Consensus sequence of repeated hexanucleotides within the 5'- SQ aarqga CC max mismatch : 0 AI 00000 1 chain 24 sites find / exp.num. 7.300 interval 12 TH num begin end exp.num. dist. mismatch site sequence TD 1 376 381 7.29980 0 0: 0 0 AAATGA 2 456 461 7.29980 0 0: 0 0 AAAGGA 3 486 491 7.29980 0 0: 0 0 AAAGGA 4 929 934 7.29980 0 0: 0 0 AAATGA 5 1915 1920 7.29980 0 0: 0 0 AAAGGA 6 2215 2220 7.29980 0 0: 0 0 AAATGA 7 2240 2245 7.29980 0 0: 0 0 AAGGGA 8 2343 2348 7.29980 0 0: 0 0 AAAGGA 9 2417 2422 7.29980 0 0: 0 0 AAATGA 10 2630 2635 7.29980 0 0: 0 0 AAAGGA 11 2752 2757 7.29980 0 0: 0 0 AAATGA 12 3240 3245 7.29980 0 0: 0 0 AAGGGA 13 3507 3512 7.29980 0 0: 0 0 AAGTGA 14 3883 3888 7.29980 0 0: 0 0 AAATGA 15 4749 4754 7.29980 0 0: 0 0 AAAGGA 16 5011 5016 7.29980 0 0: 0 0 AAGTGA 17 5266 5271 7.29980 0 0: 0 0 AAATGA 18 5509 5514 7.29980 0 0: 0 0 AAGTGA 19 5620 5625 7.29980 0 0: 0 0 AAATGA 20 5712 5717 7.29980 0 0: 0 0 AAATGA 21 5755 5760 7.29980 0 0: 0 0 AAGTGA 22 5905 5910 7.29980 0 0: 0 0 AAATGA 23 7027 7032 7.29980 0 0: 0 0 AAAGGA 24 7414 7419 7.29980 0 0: 0 0 AAATGA AI 00000 2 chain 6 sites find / exp.num. 7.300 interval 12 TD 1 1441 1436 7.29980 0 0: 0 0 AAAGGA 2 1942 1937 7.29980 0 0: 0 0 AAATGA 3 3425 3420 7.29980 0 0: 0 0 AAGTGA 4 4974 4969 7.29980 0 0: 0 0 AAGTGA 5 5930 5925 7.29980 0 0: 0 0 AAATGA 6 6945 6940 7.29980 0 0: 0 0 AAATGA NM Sequence frequently found in the promoter region of histone H SQ cgcac CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. 7.301 interval 12 TH num begin end exp.num. dist. mismatch site sequence TD 1 637 641 7.30078 0 0: 0 0 CGCAC AI 00000 2 chain 1 sites find / exp.num. 7.301 interval 12 TD 1 2254 2250 7.30078 0 0: 0 0 CGCAC