ID DMMGD1
DE D.melanogaster mgd1 retrotransposon DNA
NM POLIMERASE II
SQ tATAaa
CC max mismatch : 0
AI 00000 1 chain 10 sites find / exp.num. 1.825 interval 4
TH num begin end exp.num. dist. mismatch site sequence
TD 1 318 323 1.82495 0 0: 0 0 TATAAA
2 620 625 1.82495 0 0: 0 0 TATAAA
3 1707 1712 1.82495 0 0: 0 0 TATAAA
4 1809 1814 1.82495 0 0: 0 0 TATAAA
5 2982 2987 1.82495 0 0: 0 0 TATAAA
6 3673 3678 1.82495 0 0: 0 0 TATAAA
7 5281 5286 1.82495 0 0: 0 0 TATAAA
8 5536 5541 1.82495 0 0: 0 0 TATAAA
9 6065 6070 1.82495 0 0: 0 0 TATAAA
10 7356 7361 1.82495 0 0: 0 0 TATAAA
AI 00000 2 chain 3 sites find / exp.num. 1.825 interval 4
TD 1 1476 1471 1.82495 0 0: 0 0 TATAAA
2 1710 1705 1.82495 0 0: 0 0 TATAAA
3 3100 3095 1.82495 0 0: 0 0 TATAAA
NM Inr (ripl.POLIMERASE II)
SQ NTCAQTY
CC max mismatch : 0
AI 00000 1 chain 13 sites find / exp.num. 7.299 interval 12
TH num begin end exp.num. dist. mismatch site sequence
TD 1 312 318 7.29883 0 0: 0 0 ATCAGTT
2 1418 1424 7.29883 0 0: 0 0 TTCAGTC
3 1466 1472 7.29883 0 0: 0 0 CTCAGTT
4 1936 1942 7.29883 0 0: 0 0 ATCATTT
5 2459 2465 7.29883 0 0: 0 0 ATCAGTT
6 3249 3255 7.29883 0 0: 0 0 TTCAGTC
7 3551 3557 7.29883 0 0: 0 0 CTCATTC
8 5486 5492 7.29883 0 0: 0 0 ATCATTC
9 5924 5930 7.29883 0 0: 0 0 ATCATTT
10 5983 5989 7.29883 0 0: 0 0 ATCAGTT
11 6935 6941 7.29883 0 0: 0 0 ATCATTC
12 6939 6945 7.29883 0 0: 0 0 TTCATTT
13 7350 7356 7.29883 0 0: 0 0 ATCAGTT
AI 00000 2 chain 16 sites find / exp.num. 7.299 interval 12
TD 1 382 376 7.29883 0 0: 0 0 GTCATTT
2 935 929 7.29883 0 0: 0 0 CTCATTT
3 1656 1650 7.29883 0 0: 0 0 TTCATTC
4 2221 2215 7.29883 0 0: 0 0 GTCATTT
5 2423 2417 7.29883 0 0: 0 0 TTCATTT
6 2758 2752 7.29883 0 0: 0 0 GTCATTT
7 3646 3640 7.29883 0 0: 0 0 TTCAGTT
8 3889 3883 7.29883 0 0: 0 0 GTCATTT
9 4326 4320 7.29883 0 0: 0 0 ATCATTC
10 5079 5073 7.29883 0 0: 0 0 CTCATTC
11 5272 5266 7.29883 0 0: 0 0 CTCATTT
12 5626 5620 7.29883 0 0: 0 0 ATCATTT
13 5718 5712 7.29883 0 0: 0 0 TTCATTT
14 5745 5739 7.29883 0 0: 0 0 GTCATTC
15 5911 5905 7.29883 0 0: 0 0 CTCATTT
16 7420 7414 7.29883 0 0: 0 0 GTCATTT
NM "TATA box";one of a number of homology blocks at the 5'-ends
SQ gtataaaatag
AI 00000 2 chain 1 sites find / exp.num. .061 interval 1
TH num begin end exp.num. dist. mismatch site sequence
TD 1 661 651 .06055 0 1: 1 0 GTATATAATAG
NM n=55;found upstream from the promoter of the pheasant conalbu-
SQ ggaaa
CC max mismatch : 0
AI 00000 1 chain 18 sites find / exp.num. 7.301 interval 12
TH num begin end exp.num. dist. mismatch site sequence
TD 1 489 493 7.30078 0 0: 0 0 GGAAA
2 591 595 7.30078 0 0: 0 0 GGAAA
3 935 939 7.30078 0 0: 0 0 GGAAA
4 1204 1208 7.30078 0 0: 0 0 GGAAA
5 1918 1922 7.30078 0 0: 0 0 GGAAA
6 2204 2208 7.30078 0 0: 0 0 GGAAA
7 2697 2701 7.30078 0 0: 0 0 GGAAA
8 2823 2827 7.30078 0 0: 0 0 GGAAA
9 2853 2857 7.30078 0 0: 0 0 GGAAA
10 2907 2911 7.30078 0 0: 0 0 GGAAA
11 3023 3027 7.30078 0 0: 0 0 GGAAA
12 4054 4058 7.30078 0 0: 0 0 GGAAA
13 4752 4756 7.30078 0 0: 0 0 GGAAA
14 5124 5128 7.30078 0 0: 0 0 GGAAA
15 5378 5382 7.30078 0 0: 0 0 GGAAA
16 5709 5713 7.30078 0 0: 0 0 GGAAA
17 5903 5907 7.30078 0 0: 0 0 GGAAA
18 6614 6618 7.30078 0 0: 0 0 GGAAA
AI 00000 2 chain 3 sites find / exp.num. 7.301 interval 12
TD 1 3166 3162 7.30078 0 0: 0 0 GGAAA
2 3336 3332 7.30078 0 0: 0 0 GGAAA
3 3771 3767 7.30078 0 0: 0 0 GGAAA
NM POLY A SINGLE BLOCK
SQ AATAAA
CC max mismatch : 0
AI 00000 1 chain 37 sites find / exp.num. 1.825 interval 4
TH num begin end exp.num. dist. mismatch site sequence
TD 1 355 360 1.82495 0 0: 0 0 AATAAA
2 366 371 1.82495 0 0: 0 0 AATAAA
3 776 781 1.82495 0 0: 0 0 AATAAA
4 1057 1062 1.82495 0 0: 0 0 AATAAA
5 1265 1270 1.82495 0 0: 0 0 AATAAA
6 1283 1288 1.82495 0 0: 0 0 AATAAA
7 1310 1315 1.82495 0 0: 0 0 AATAAA
8 1506 1511 1.82495 0 0: 0 0 AATAAA
9 2099 2104 1.82495 0 0: 0 0 AATAAA
10 2441 2446 1.82495 0 0: 0 0 AATAAA
11 3058 3063 1.82495 0 0: 0 0 AATAAA
12 3967 3972 1.82495 0 0: 0 0 AATAAA
13 4090 4095 1.82495 0 0: 0 0 AATAAA
14 4567 4572 1.82495 0 0: 0 0 AATAAA
15 4963 4968 1.82495 0 0: 0 0 AATAAA
16 5182 5187 1.82495 0 0: 0 0 AATAAA
17 5476 5481 1.82495 0 0: 0 0 AATAAA
18 5561 5566 1.82495 0 0: 0 0 AATAAA
19 5635 5640 1.82495 0 0: 0 0 AATAAA
20 5969 5974 1.82495 0 0: 0 0 AATAAA
21 6617 6622 1.82495 0 0: 0 0 AATAAA
22 6623 6628 1.82495 0 0: 0 0 AATAAA
23 6701 6706 1.82495 0 0: 0 0 AATAAA
24 6715 6720 1.82495 0 0: 0 0 AATAAA
25 6729 6734 1.82495 0 0: 0 0 AATAAA
26 6743 6748 1.82495 0 0: 0 0 AATAAA
27 6757 6762 1.82495 0 0: 0 0 AATAAA
28 6771 6776 1.82495 0 0: 0 0 AATAAA
29 6785 6790 1.82495 0 0: 0 0 AATAAA
30 6799 6804 1.82495 0 0: 0 0 AATAAA
31 6813 6818 1.82495 0 0: 0 0 AATAAA
32 6827 6832 1.82495 0 0: 0 0 AATAAA
33 6842 6847 1.82495 0 0: 0 0 AATAAA
34 6847 6852 1.82495 0 0: 0 0 AATAAA
35 6857 6862 1.82495 0 0: 0 0 AATAAA
36 7393 7398 1.82495 0 0: 0 0 AATAAA
37 7404 7409 1.82495 0 0: 0 0 AATAAA
AI 00000 2 chain 6 sites find / exp.num. 1.825 interval 4
TD 1 405 400 1.82495 0 0: 0 0 AATAAA
2 1631 1626 1.82495 0 0: 0 0 AATAAA
3 4648 4643 1.82495 0 0: 0 0 AATAAA
4 5420 5415 1.82495 0 0: 0 0 AATAAA
5 6016 6011 1.82495 0 0: 0 0 AATAAA
6 7443 7438 1.82495 0 0: 0 0 AATAAA
NM POLY A SIGNAL
SQ AATAMA-ygtgttyy
CC distance between two blocks of site: min = 20 max = 30
CC max mismatch in 1-st block: 0, in 2-nd block: 1
AI 00000 1 chain 2 sites find / exp.num. .093 interval 1
TH num begin end exp.num. dist. mismatch site sequence
TD 1 355 394 .09271 26 1: 0 1 AATAAAaaccaaataaagataaaatgaccaacTGCGTTTT
2 7393 7432 .09271 26 1: 0 1 AATAAAaaccaaataaagataaaatgaccaacTGCGTTTT
NM One of two related variants of a presumed transcription termi
SQ tatgt
CC max mismatch : 0
AI 00000 1 chain 7 sites find / exp.num. 7.301 interval 12
TH num begin end exp.num. dist. mismatch site sequence
TD 1 1486 1490 7.30078 0 0: 0 0 TATGT
2 2247 2251 7.30078 0 0: 0 0 TATGT
3 4443 4447 7.30078 0 0: 0 0 TATGT
4 5333 5337 7.30078 0 0: 0 0 TATGT
5 5762 5766 7.30078 0 0: 0 0 TATGT
6 6185 6189 7.30078 0 0: 0 0 TATGT
7 6433 6437 7.30078 0 0: 0 0 TATGT
AI 00000 2 chain 16 sites find / exp.num. 7.301 interval 12
TD 1 243 239 7.30078 0 0: 0 0 TATGT
2 247 243 7.30078 0 0: 0 0 TATGT
3 618 614 7.30078 0 0: 0 0 TATGT
4 644 640 7.30078 0 0: 0 0 TATGT
5 894 890 7.30078 0 0: 0 0 TATGT
6 922 918 7.30078 0 0: 0 0 TATGT
7 1252 1248 7.30078 0 0: 0 0 TATGT
8 2738 2734 7.30078 0 0: 0 0 TATGT
9 3017 3013 7.30078 0 0: 0 0 TATGT
10 3036 3032 7.30078 0 0: 0 0 TATGT
11 3451 3447 7.30078 0 0: 0 0 TATGT
12 3470 3466 7.30078 0 0: 0 0 TATGT
13 4457 4453 7.30078 0 0: 0 0 TATGT
14 5810 5806 7.30078 0 0: 0 0 TATGT
15 7281 7277 7.30078 0 0: 0 0 TATGT
16 7285 7281 7.30078 0 0: 0 0 TATGT
NM ORI HUM
SQ taaatttagt
AI 00000 2 chain 1 sites find / exp.num. .221 interval 1
TH num begin end exp.num. dist. mismatch site sequence
TD 1 3274 3265 .22087 0 1: 1 0 TAAATGTAGT
NM HSV ORI
SQ atatatatat
CC max mismatch : 1
AI 00000 1 chain 4 sites find / exp.num. .221 interval 1
TH num begin end exp.num. dist. mismatch site sequence
TD 1 6196 6205 .22087 0 1: 1 0 ATATATATCT
2 6904 6913 .22087 0 1: 1 0 AAATATATAT
3 6906 6915 .00712 0 0: 0 0 ATATATATAT
4 6908 6917 .22087 0 1: 1 0 ATATATATTT
AI 00000 2 chain 4 sites find / exp.num. .221 interval 1
TD 1 6205 6196 .22087 0 1: 1 0 AGATATATAT
2 6913 6904 .22087 0 1: 1 0 ATATATATTT
3 6915 6906 .00712 0 0: 0 0 ATATATATAT
4 6917 6908 .22087 0 1: 1 0 AAATATATAT
NM ARS Y XE DM
SQ xtttatrtttx
CC max mismatch : 1
AI 00000 1 chain 3 sites find / exp.num. .399 interval 2
TH num begin end exp.num. dist. mismatch site sequence
TD 1 1623 1633 .39894 0 1: 1 0 ATTTTTATTTT
2 1625 1635 .39894 0 1: 1 0 TTTTATTTTTA
3 6908 6918 .39894 0 1: 1 0 ATATATATTTT
AI 00000 2 chain 14 sites find / exp.num. .399 interval 2
TD 1 378 368 .39894 0 1: 1 0 TTTTATCTTTA
2 626 616 .39894 0 1: 1 0 TTTTATATTAT
3 1291 1281 .39894 0 1: 1 0 TTTTTTATTTT
4 1316 1306 .39894 0 1: 1 0 TTTTATTTTTT
5 1318 1308 .39894 0 1: 1 0 ATTTTTATTTT
6 1324 1314 .39894 0 1: 1 0 TTGTATATTTT
7 2988 2978 .39894 0 1: 1 0 TTTTATAGTTA
8 3679 3669 .39894 0 1: 1 0 TTTTATATTTG
9 5287 5277 .01425 0 0: 0 0 TTTTATATTTT
10 5584 5574 .39894 0 1: 1 0 TTTTAAATTTT
11 6629 6619 .39894 0 1: 1 0 TTTTATTTTTA
12 6631 6621 .39894 0 1: 1 0 TTTTTTATTTT
13 6913 6903 .39894 0 1: 1 0 ATATATATTTT
14 7416 7406 .39894 0 1: 1 0 TTTTATCTTTA
NM ARS yeast, xenopus
SQ xttttatrtttx
CC max mismatch : 1
AI 00000 1 chain 1 sites find / exp.num. .110 interval 1
TH num begin end exp.num. dist. mismatch site sequence
TD 1 1624 1635 .11041 0 1: 1 0 TTTTTATTTTTA
AI 00000 2 chain 10 sites find / exp.num. .110 interval 1
TD 1 379 368 .11041 0 1: 1 0 ATTTTATCTTTA
2 627 616 .11041 0 1: 1 0 TTTTTATATTAT
3 1292 1281 .11041 0 1: 1 0 TTTTTTTATTTT
4 1317 1306 .11041 0 1: 1 0 TTTTTATTTTTT
5 1325 1314 .11041 0 1: 1 0 TTTGTATATTTT
6 3680 3669 .11041 0 1: 1 0 TTTTTATATTTG
7 5288 5277 .00356 0 0: 0 0 TTTTTATATTTT
8 5585 5574 .11041 0 1: 1 0 TTTTTAAATTTT
9 6630 6619 .11041 0 1: 1 0 TTTTTATTTTTA
10 7417 7406 .11041 0 1: 1 0 ATTTTATCTTTA
NM SAR A BOX OF DROSOFILA j mol biol v198 n 4 p677 &cell v46 n4
SQ aataaayaaa
CC max mismatch : 1
AI 00000 1 chain 11 sites find / exp.num. .413 interval 2
TH num begin end exp.num. dist. mismatch site sequence
TD 1 94 103 .41324 0 1: 1 0 AATAAGTAAA
2 791 800 .41324 0 1: 1 0 AATTAACAAA
3 1265 1274 .41324 0 1: 1 0 AATAAACCAA
4 1283 1292 .41324 0 1: 1 0 AATAAAAAAA
5 1306 1315 .41324 0 1: 1 0 AAAAAATAAA
6 1316 1325 .41324 0 1: 1 0 AATATACAAA
7 3963 3972 .41324 0 1: 1 0 AATTAATAAA
8 4090 4099 .41324 0 1: 1 0 AATAAACAAG
9 5182 5191 .41324 0 1: 1 0 AATAAATAGA
10 6827 6836 .41324 0 1: 1 0 AATAAAAAAA
11 7132 7141 .41324 0 1: 1 0 AATAAGTAAA
AI 00000 2 chain 1 sites find / exp.num. .413 interval 2
TD 1 6251 6242 .41324 0 1: 1 0 AATAAGTAAA
NM SAR T BOX OF DROSOFILA cell v46 n4 p521
SQ TtXTxTTXtt
CC max mismatch : 0
AI 00000 1 chain 1 sites find / exp.num. .057 interval 1
TH num begin end exp.num. dist. mismatch site sequence
TD 1 1625 1634 .05700 0 0: 0 0 TTTTATTTTT
AI 00000 2 chain 50 sites find / exp.num. .057 interval 1
TD 1 1063 1054 .05700 0 0: 0 0 TTTTATTTTT
2 1235 1226 .05700 0 0: 0 0 TTTTTTTTTT
3 1236 1227 .05700 0 0: 0 0 TTTTTTTTTT
4 1237 1228 .05700 0 0: 0 0 TTTTTTTTTT
5 1238 1229 .05700 0 0: 0 0 TTTTTTTTTT
6 1239 1230 .05700 0 0: 0 0 TTTTTTTTTT
7 1289 1280 .05700 0 0: 0 0 TTTTATTTTT
8 1292 1283 .05700 0 0: 0 0 TTTTTTTATT
9 1295 1286 .05700 0 0: 0 0 TTTTTTTTTT
10 1296 1287 .05700 0 0: 0 0 TTTTTTTTTT
11 1297 1288 .05700 0 0: 0 0 TTTTTTTTTT
12 1298 1289 .05700 0 0: 0 0 TTTTTTTTTT
13 1299 1290 .05700 0 0: 0 0 TTTTTTTTTT
14 1300 1291 .05700 0 0: 0 0 TTTTTTTTTT
15 1301 1292 .05700 0 0: 0 0 TTTTTTTTTT
16 1302 1293 .05700 0 0: 0 0 TTTTTTTTTT
17 1303 1294 .05700 0 0: 0 0 TTTTTTTTTT
18 1304 1295 .05700 0 0: 0 0 TTTTTTTTTT
19 1305 1296 .05700 0 0: 0 0 TTTTTTTTTT
20 1306 1297 .05700 0 0: 0 0 TTTTTTTTTT
21 1307 1298 .05700 0 0: 0 0 TTTTTTTTTT
22 1308 1299 .05700 0 0: 0 0 TTTTTTTTTT
23 1309 1300 .05700 0 0: 0 0 TTTTTTTTTT
24 1310 1301 .05700 0 0: 0 0 TTTTTTTTTT
25 1311 1302 .05700 0 0: 0 0 TTTTTTTTTT
26 1314 1305 .05700 0 0: 0 0 TTATTTTTTT
27 1316 1307 .05700 0 0: 0 0 TTTTATTTTT
28 1566 1557 .05700 0 0: 0 0 TTTTTTTTTT
29 1567 1558 .05700 0 0: 0 0 TTTTTTTTTT
30 1568 1559 .05700 0 0: 0 0 TTTTTTTTTT
31 1569 1560 .05700 0 0: 0 0 TTTTTTTTTT
32 1570 1561 .05700 0 0: 0 0 TTTTTTTTTT
33 1571 1562 .05700 0 0: 0 0 TTTTTTTTTT
34 1572 1563 .05700 0 0: 0 0 TTTTTTTTTT
35 1573 1564 .05700 0 0: 0 0 TTTTTTTTTT
36 1574 1565 .05700 0 0: 0 0 TTTTTTTTTT
37 1575 1566 .05700 0 0: 0 0 TTTTTTTTTT
38 1576 1567 .05700 0 0: 0 0 TTTTTTTTTT
39 1577 1568 .05700 0 0: 0 0 TTTTTTTTTT
40 1578 1569 .05700 0 0: 0 0 TTTTTTTTTT
41 1579 1570 .05700 0 0: 0 0 TTTTTTTTTT
42 1580 1571 .05700 0 0: 0 0 TTTTTTTTTT
43 1581 1572 .05700 0 0: 0 0 TTTTTTTTTT
44 1582 1573 .05700 0 0: 0 0 TTTTTTTTTT
45 1583 1574 .05700 0 0: 0 0 TTTTTTTTTT
46 1584 1575 .05700 0 0: 0 0 TTTTTTTTTT
47 1585 1576 .05700 0 0: 0 0 TTTTTTTTTT
48 1586 1577 .05700 0 0: 0 0 TTTTTTTTTT
49 1587 1578 .05700 0 0: 0 0 TTTTTTTTTT
50 1664 1655 .05700 0 0: 0 0 TTTTTTTTTT
NM initiation of translation in genes of animals
SQ zaannatgg
CC max mismatch : 0
AI 00000 1 chain 2 sites find / exp.num. .912 interval 3
TH num begin end exp.num. dist. mismatch site sequence
TD 1 1168 1176 .91211 0 0: 0 0 GAAGAATGG
2 1322 1330 .91211 0 0: 0 0 CAAAAATGG
NM optimal sequence for initiation of translation by eukaryotik
SQ accatgg
CC max mismatch : 0
AI 00000 1 chain 1 sites find / exp.num. .456 interval 2
TH num begin end exp.num. dist. mismatch site sequence
TD 1 2899 2905 .45618 0 0: 0 0 ACCATGG
AI 00000 2 chain 1 sites find / exp.num. .456 interval 2
TD 1 2906 2900 .45618 0 0: 0 0 ACCATGG
NM ANIMAL POLIMERASE II
SQ ggycaatct-tataxax
AI 00000 2 chain 1 sites find / exp.num. .278 interval 0
TH num begin end exp.num. dist. mismatch site sequence
TD 1 1178 1114 .27832 49 2: 1 1 GGCCATTCTtctcatcgggcagaaaaagttccgctcaatgttacaatattttgtgtaaTATTAAT
NM INTRON-EXON JUNCTION
SQ yyyyynyAGG
AI 00000 2 chain 1 sites find / exp.num. 1.824 interval 4
TH num begin end exp.num. dist. mismatch site sequence
TD 1 5713 5704 1.82397 0 0: 0 0 TTTCCTCAGG
NM lar+3'
SQ YTaAT-yyyyaG
CC distance between two blocks of site: min = 16 max = 36
CC max mismatch in 1-st block: 0, in 2-nd block: 0
AI 00000 1 chain 10 sites find / exp.num. 1.193 interval 3
TH num begin end exp.num. dist. mismatch site sequence
TD 1 92 127 1.19266 25 0: 0 0 CTAATaagtaaacttaggaccaccctaattCCTTAG
2 92 138 1.19266 36 0: 0 0 CTAATaagtaaacttaggaccaccctaattccttagggtcaCCCTAG
3 116 149 1.19266 23 0: 0 0 CTAATtccttagggtcaccctagtagatCTTTAG
4 157 195 1.19266 28 0: 0 0 CTAATactaaatatgcgaattcaggatgtacgcCTTTAG
5 3965 4001 1.19266 26 0: 0 0 TTAATaaaagatggcattgtcgaacaatctaTTTCAG
6 4757 4794 1.19266 27 0: 0 0 TTAATgaaaccaacactccttcagtacccagaTTTCAG
7 7130 7165 1.19266 25 0: 0 0 CTAATaagtaaacttaggaccaccctaattCCTTAG
8 7130 7176 1.19266 36 0: 0 0 CTAATaagtaaacttaggaccaccctaattccttagggtcaCCCTAG
9 7154 7187 1.19266 23 0: 0 0 CTAATtccttagggtcaccctagtagatCTTTAG
10 7195 7233 1.19266 28 0: 0 0 CTAATactaaatatgcgaattcaggatgtacgcCTTTAG
AI 00000 2 chain 1 sites find / exp.num. 1.193 interval 3
TD 1 5597 5570 1.19266 17 0: 0 0 TTAATagcgctatttttaaattTTTTAG
NM ARS-fragment of chlamydomonada
SQ raattttaaat
CC max mismatch : 1
AI 00000 1 chain 1 sites find / exp.num. .114 interval 1
TH num begin end exp.num. dist. mismatch site sequence
TD 1 6657 6667 .11398 0 1: 1 0 AAATTTTTAAT
AI 00000 2 chain 2 sites find / exp.num. .114 interval 1
TD 1 1626 1616 .11398 0 1: 1 0 AAATTTTAGAT
2 4468 4458 .11398 0 1: 1 0 TAATTTTAAAT
NM ARS of chloroplasts
SQ anrtnaccaagt
CC max mismatch : 1
AI 00000 1 chain 4 sites find / exp.num. .413 interval 2
TH num begin end exp.num. dist. mismatch site sequence
TD 1 376 387 .41313 0 1: 1 0 AAATGACCAACT
2 5501 5512 .41313 0 1: 1 0 TTGTCACCAAGT
3 6311 6322 .41313 0 1: 1 0 AGATTACCAAGA
4 7414 7425 .41313 0 1: 1 0 AAATGACCAACT
NM ARS of human
SQ tattyytaaatttagtxt
CC max mismatch : 4
AI 00000 1 chain 1 sites find / exp.num. .145 interval 1
TH num begin end exp.num. dist. mismatch site sequence
TD 1 1622 1639 .14482 0 4: 4 0 AATTTTTATTTTTAATAT
AI 00000 2 chain 14 sites find / exp.num. .145 interval 1
TD 1 61 44 .14482 0 4: 4 0 TATTATTAATATTATTAT
2 177 160 .14482 0 4: 4 0 AATTCGCATATTTAGTAT
3 1319 1302 .14482 0 4: 4 0 TATTTTTATTTTTTTTTT
4 1661 1644 .14482 0 4: 4 0 TTTTTTTCATTCTAGTTT
5 3094 3077 .14482 0 4: 4 0 AATGCTTAAATTGAGATT
6 3280 3263 .01424 0 3: 3 0 CATTTCTAAATGTAGTGT
7 4468 4451 .14482 0 4: 4 0 TAATTTTAAATTATGTTG
8 5212 5195 .14482 0 4: 4 0 TGTTGTTACCTTTAGTAT
9 5290 5273 .14482 0 4: 4 0 CATTTTTATATTTTCTTT
10 5587 5570 .01424 0 3: 3 0 TATTTTTAAATTTTTTAG
11 6412 6395 .14482 0 4: 4 0 TATTTCTAATCGTAGCTT
12 6971 6954 .14482 0 4: 4 0 TTTTTTTAAATGTACATT
13 7099 7082 .14482 0 4: 4 0 TATTATTAATATTATTAT
14 7215 7198 .14482 0 4: 4 0 AATTCGCATATTTAGTAT
NM sequence repeated nontandemly several times in the origin of t
SQ gcctc
AI 00000 2 chain 6 sites find / exp.num. 7.301 interval 12
TH num begin end exp.num. dist. mismatch site sequence
TD 1 1516 1512 7.30078 0 0: 0 0 GCCTC
2 1699 1695 7.30078 0 0: 0 0 GCCTC
3 2888 2884 7.30078 0 0: 0 0 GCCTC
4 3431 3427 7.30078 0 0: 0 0 GCCTC
5 4685 4681 7.30078 0 0: 0 0 GCCTC
6 5683 5679 7.30078 0 0: 0 0 GCCTC
NM consensus sequence of the cores of autonomously replicating
SQ xaaayataaax
CC max mismatch : 1
AI 00000 1 chain 14 sites find / exp.num. .399 interval 2
TH num begin end exp.num. dist. mismatch site sequence
TD 1 368 378 .39894 0 1: 1 0 TAAAGATAAAA
2 616 626 .39894 0 1: 1 0 ATAATATAAAA
3 1281 1291 .39894 0 1: 1 0 AAAATAAAAAA
4 1306 1316 .39894 0 1: 1 0 AAAAAATAAAA
5 1308 1318 .39894 0 1: 1 0 AAAATAAAAAT
6 1314 1324 .39894 0 1: 1 0 AAAATATACAA
7 2978 2988 .39894 0 1: 1 0 TAACTATAAAA
8 3669 3679 .39894 0 1: 1 0 CAAATATAAAA
9 5277 5287 .01425 0 0: 0 0 AAAATATAAAA
10 5574 5584 .39894 0 1: 1 0 AAAATTTAAAA
11 6619 6629 .39894 0 1: 1 0 TAAAAATAAAA
12 6621 6631 .39894 0 1: 1 0 AAAATAAAAAA
13 6903 6913 .39894 0 1: 1 0 AAAATATATAT
14 7406 7416 .39894 0 1: 1 0 TAAAGATAAAA
AI 00000 2 chain 3 sites find / exp.num. .399 interval 2
TD 1 1633 1623 .39894 0 1: 1 0 AAAATAAAAAT
2 1635 1625 .39894 0 1: 1 0 TAAAAATAAAA
3 6918 6908 .39894 0 1: 1 0 AAAATATATAT
NM Promotor of RNA polymerase 1 (mouse, rat)
SQ atcttt-tattg
AI 00000 2 chain 2 sites find / exp.num. .135 interval 1
TH num begin end exp.num. dist. mismatch site sequence
TD 1 2296 2269 .13504 17 1: 1 0 AACTTTttgccgtcaaactcaggTATTG
2 5586 5560 .13504 16 1: 1 0 ATTTTTaaattttttagtatttTATTG
NM Promotor of RNA polymerase 1 (human)
SQ atcttt-ttttgg
AI 00000 2 chain 1 sites find / exp.num. .042 interval 0
TH num begin end exp.num. dist. mismatch site sequence
TD 1 1728 1699 .04218 18 1: 1 0 ATCTATgcaatcgaactttataaaTTTTGG
NM consensus sequence near the 3'-ends of the adenovirus 2 genes
SQ gggttg
CC max mismatch : 0
AI 00000 1 chain 2 sites find / exp.num. 1.825 interval 4
TH num begin end exp.num. dist. mismatch site sequence
TD 1 1329 1334 1.82495 0 0: 0 0 GGGTTG
2 2565 2570 1.82495 0 0: 0 0 GGGTTG
AI 00000 2 chain 1 sites find / exp.num. 1.825 interval 4
TD 1 1003 998 1.82495 0 0: 0 0 GGGTTG
NM consensus sequence near the 3'-ends of the adenovirus 2 genes
SQ gggttttg
AI 00000 2 chain 1 sites find / exp.num. .114 interval 1
TH num begin end exp.num. dist. mismatch site sequence
TD 1 1279 1272 .11403 0 0: 0 0 GGGTTTTG
NM consensus sequence near the 3'-ends of the adenovirus 2 genes
SQ ttgggg
AI 00000 2 chain 3 sites find / exp.num. 1.825 interval 4
TH num begin end exp.num. dist. mismatch site sequence
TD 1 680 675 1.82495 0 0: 0 0 TTGGGG
2 4307 4302 1.82495 0 0: 0 0 TTGGGG
3 4584 4579 1.82495 0 0: 0 0 TTGGGG
NM one of two suggested consensus sequences for RNA-polymerase I
SQ ggttgg
CC max mismatch : 0
AI 00000 1 chain 2 sites find / exp.num. 1.825 interval 4
TH num begin end exp.num. dist. mismatch site sequence
TD 1 1330 1335 1.82495 0 0: 0 0 GGTTGG
2 6686 6691 1.82495 0 0: 0 0 GGTTGG
AI 00000 2 chain 3 sites find / exp.num. 1.825 interval 4
TD 1 1002 997 1.82495 0 0: 0 0 GGTTGG
2 3563 3558 1.82495 0 0: 0 0 GGTTGG
3 6697 6692 1.82495 0 0: 0 0 GGTTGG
NM one of two suggested consensus sequences for RNA-polymerase I
SQ ggttttgg
AI 00000 2 chain 2 sites find / exp.num. .114 interval 1
TH num begin end exp.num. dist. mismatch site sequence
TD 1 1278 1271 .11403 0 0: 0 0 GGTTTTGG
2 2976 2969 .11403 0 0: 0 0 GGTTTTGG
NM consensus sequence of human mitochondrial promoters
SQ canaccccaaagaya
CC max mismatch : 2
AI 00000 1 chain 1 sites find / exp.num. .043 interval 0
TH num begin end exp.num. dist. mismatch site sequence
TD 1 1272 1286 .04350 0 2: 2 0 CAAAACCCAAAAATA
NM putative regulatory sequence(promoter element) present in
SQ gggnggrr
CC max mismatch : 0
AI 00000 1 chain 1 sites find / exp.num. 1.824 interval 4
TH num begin end exp.num. dist. mismatch site sequence
TD 1 602 609 1.82446 0 0: 0 0 GGGCGGAG
NM consensus of the TATA-box of Dictyostelium promoters
SQ tataaaxa
CC max mismatch : 0
AI 00000 1 chain 4 sites find / exp.num. .228 interval 1
TH num begin end exp.num. dist. mismatch site sequence
TD 1 620 627 .22806 0 0: 0 0 TATAAAAA
2 3673 3680 .22806 0 0: 0 0 TATAAAAA
3 5281 5288 .22806 0 0: 0 0 TATAAAAA
4 6065 6072 .22806 0 0: 0 0 TATAAAAA
AI 00000 2 chain 1 sites find / exp.num. .228 interval 1
TD 1 3100 3093 .22806 0 0: 0 0 TATAAAAA
NM "Goldberg-Hogness box";consensus sequence belonging to eukar
SQ tataxax
CC max mismatch : 0
AI 00000 1 chain 11 sites find / exp.num. 1.825 interval 4
TH num begin end exp.num. dist. mismatch site sequence
TD 1 318 324 1.82471 0 0: 0 0 TATAAAT
2 620 626 1.82471 0 0: 0 0 TATAAAA
3 1809 1815 1.82471 0 0: 0 0 TATAAAT
4 2982 2988 1.82471 0 0: 0 0 TATAAAA
5 3673 3679 1.82471 0 0: 0 0 TATAAAA
6 5281 5287 1.82471 0 0: 0 0 TATAAAA
7 6065 6071 1.82471 0 0: 0 0 TATAAAA
8 6197 6203 1.82471 0 0: 0 0 TATATAT
9 6907 6913 1.82471 0 0: 0 0 TATATAT
10 6909 6915 1.82471 0 0: 0 0 TATATAT
11 7356 7362 1.82471 0 0: 0 0 TATAAAT
AI 00000 2 chain 8 sites find / exp.num. 1.825 interval 4
TD 1 660 654 1.82471 0 0: 0 0 TATATAA
2 1524 1518 1.82471 0 0: 0 0 TATATAA
3 1710 1704 1.82471 0 0: 0 0 TATAAAT
4 3100 3094 1.82471 0 0: 0 0 TATAAAA
5 6202 6196 1.82471 0 0: 0 0 TATATAT
6 6912 6906 1.82471 0 0: 0 0 TATATAT
7 6914 6908 1.82471 0 0: 0 0 TATATAT
8 6990 6984 1.82471 0 0: 0 0 TATATAA
NM consensus sequence of a tentative transcription initiation
SQ aagtta
CC max mismatch : 0
AI 00000 1 chain 2 sites find / exp.num. 1.825 interval 4
TH num begin end exp.num. dist. mismatch site sequence
TD 1 2292 2297 1.82495 0 0: 0 0 AAGTTA
2 6390 6395 1.82495 0 0: 0 0 AAGTTA
AI 00000 2 chain 3 sites find / exp.num. 1.825 interval 4
TD 1 1391 1386 1.82495 0 0: 0 0 AAGTTA
2 6492 6487 1.82495 0 0: 0 0 AAGTTA
3 7004 6999 1.82495 0 0: 0 0 AAGTTA
NM sequence frequently found in the promoter region of histone
SQ ccgca
CC max mismatch : 0
AI 00000 1 chain 2 sites find / exp.num. 7.301 interval 12
TH num begin end exp.num. dist. mismatch site sequence
TD 1 879 883 7.30078 0 0: 0 0 CCGCA
2 2230 2234 7.30078 0 0: 0 0 CCGCA
NM Binding-site for factor NFI, which stimulates replication
SQ tggmn-gccaa
CC distance between two blocks of site: min = 3 max = 6
CC max mismatch in 1-st block: 0, in 2-nd block: 0
AI 00000 1 chain 1 sites find / exp.num. .228 interval 1
TH num begin end exp.num. dist. mismatch site sequence
TD 1 1889 1901 .22786 3 0: 0 0 TGGAGcacGCCAA
NM Sequence located at the 3'-ends of yeast genes,presumably
SQ tttttata
CC max mismatch : 0
AI 00000 1 chain 1 sites find / exp.num. .114 interval 1
TH num begin end exp.num. dist. mismatch site sequence
TD 1 3093 3100 .11403 0 0: 0 0 TTTTTATA
AI 00000 2 chain 4 sites find / exp.num. .114 interval 1
TD 1 627 620 .11403 0 0: 0 0 TTTTTATA
2 3680 3673 .11403 0 0: 0 0 TTTTTATA
3 5288 5281 .11403 0 0: 0 0 TTTTTATA
4 6072 6065 .11403 0 0: 0 0 TTTTTATA
NM One of two related variants of a presumed transcription term
SQ tagtggtggtgggct
AI 00000 2 chain 1 sites find / exp.num. .092 interval 1
TH num begin end exp.num. dist. mismatch site sequence
TD 1 6141 6127 .09231 0 3: 3 0 TGGTGATGGTGTGCT
NM Site of transcription termination mRNA in Hela cells
SQ aaaaaaaaattaaaaataaaataaaataaaaaa
CC max mismatch : 5
AI 00000 1 chain 1 sites find / exp.num. .000 interval 0
TH num begin end exp.num. dist. mismatch site sequence
TD 1 1286 1318 .00000 0 5: 5 0 AAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAT
NM Consensus of a presumed polyadenylation signal in Trypanosom
SQ aaaattyt
CC max mismatch : 0
AI 00000 1 chain 3 sites find / exp.num. .228 interval 1
TH num begin end exp.num. dist. mismatch site sequence
TD 1 1620 1627 .22806 0 0: 0 0 AAAATTTT
2 6006 6013 .22806 0 0: 0 0 AAAATTTT
3 6656 6663 .22806 0 0: 0 0 AAAATTTT
AI 00000 2 chain 3 sites find / exp.num. .228 interval 1
TD 1 1627 1620 .22806 0 0: 0 0 AAAATTTT
2 6013 6006 .22806 0 0: 0 0 AAAATTTT
3 6663 6656 .22806 0 0: 0 0 AAAATTTT
NM Signal of formiration 3'-end in mnRNA
SQ gttyn-aaarryaga
CC distance between two blocks of site: min = 0 max = 3
CC max mismatch in 1-st block: 0, in 2-nd block: 1
AI 00000 1 chain 1 sites find / exp.num. .157 interval 1
TH num begin end exp.num. dist. mismatch site sequence
TD 1 4398 4412 .15663 1 1: 0 1 GTTCTgAAAAGCACA
NM Consensus mRNA cap site in Drosophila Cell 29,1027 (Gnomic)
SQ yatcxgq
CC max mismatch : 0
AI 00000 1 chain 4 sites find / exp.num. 3.649 interval 7
TH num begin end exp.num. dist. mismatch site sequence
TD 1 2458 2464 3.64941 0 0: 0 0 CATCAGT
2 3225 3231 3.64941 0 0: 0 0 TATCAGG
3 5300 5306 3.64941 0 0: 0 0 TATCAGG
4 6201 6207 3.64941 0 0: 0 0 TATCTGT
AI 00000 2 chain 7 sites find / exp.num. 3.649 interval 7
TD 1 1018 1012 3.64941 0 0: 0 0 CATCTGG
2 1414 1408 3.64941 0 0: 0 0 CATCTGT
3 4192 4186 3.64941 0 0: 0 0 CATCAGG
4 4550 4544 3.64941 0 0: 0 0 CATCTGG
5 4820 4814 3.64941 0 0: 0 0 CATCTGT
6 5197 5191 3.64941 0 0: 0 0 TATCTGT
7 6637 6631 3.64941 0 0: 0 0 TATCTGT
NM "Cap box";one of a number of homology blocks at the 5'-ends
SQ ycattcr
CC max mismatch : 0
AI 00000 1 chain 3 sites find / exp.num. 1.825 interval 4
TH num begin end exp.num. dist. mismatch site sequence
TD 1 5487 5493 1.82471 0 0: 0 0 TCATTCA
2 5683 5689 1.82471 0 0: 0 0 CCATTCA
3 6936 6942 1.82471 0 0: 0 0 TCATTCA
AI 00000 2 chain 2 sites find / exp.num. 1.825 interval 4
TD 1 4714 4708 1.82471 0 0: 0 0 CCATTCA
2 5744 5738 1.82471 0 0: 0 0 TCATTCG
NM Sequence present near the 3'-ends of yeast mitochondrial gen
SQ aagaatat
CC max mismatch : 0
AI 00000 1 chain 1 sites find / exp.num. .114 interval 1
TH num begin end exp.num. dist. mismatch site sequence
TD 1 3107 3114 .11403 0 0: 0 0 AAGAATAT
NM Consensus of a presumed transcription processing signal of m
SQ ataatattctt
CC max mismatch : 1
AI 00000 1 chain 1 sites find / exp.num. .061 interval 1
TH num begin end exp.num. dist. mismatch site sequence
TD 1 1735 1745 .06055 0 1: 1 0 ATAGTATTCTT
AI 00000 2 chain 1 sites find / exp.num. .061 interval 1
TD 1 6987 6977 .06055 0 1: 1 0 ATAATATTTTT
NM Site of splising of vertebrates 3'-end: PNAS (1984) V 81 N 2
SQ yyyyyncagg
AI 00000 2 chain 1 sites find / exp.num. .912 interval 3
TH num begin end exp.num. dist. mismatch site sequence
TD 1 5713 5704 .91199 0 0: 0 0 TTTCCTCAGG
NM Brunch : PNAS (1984) V 81 N 23 P 7417 H
SQ uacuaac
AI 00000 2 chain 1 sites find / exp.num. .456 interval 2
TH num begin end exp.num. dist. mismatch site sequence
TD 1 3665 3659 .45618 0 0: 0 0 TACTAAC
NM Conservative blocks in selfsplising introns 1 group A:
SQ augcuggaaa
CC max mismatch : 1
AI 00000 1 chain 2 sites find / exp.num. .221 interval 1
TH num begin end exp.num. dist. mismatch site sequence
TD 1 2692 2701 .22087 0 1: 1 0 AAGCTGGAAA
2 2902 2911 .22087 0 1: 1 0 ATGGTGGAAA
NM Conservative blocks in selfsplising introns 1 group box 9L:
SQ tcagagactaca
CC max mismatch : 2
AI 00000 1 chain 1 sites find / exp.num. .281 interval 1
TH num begin end exp.num. dist. mismatch site sequence
TD 1 692 703 .28091 0 2: 2 0 TCAAAAACTACA
NM Conservative blocks in selfsplising introns 1 group box 2:
SQ aagatatagtcc
CC max mismatch : 2
AI 00000 1 chain 1 sites find / exp.num. .281 interval 1
TH num begin end exp.num. dist. mismatch site sequence
TD 1 6630 6641 .28091 0 2: 2 0 AACAGATAGTCC
NM SECOND MOTIF OF Ad5 E1a
SQ zgcgxaa
CC max mismatch : 0
AI 00000 1 chain 1 sites find / exp.num. 1.825 interval 4
TH num begin end exp.num. dist. mismatch site sequence
TD 1 4910 4916 1.82471 0 0: 0 0 GGCGAAA
NM DECAMER FROM IMMUNOGLOBULIN GENES
SQ AtGCAAAtna
CC max mismatch : 1
AI 00000 1 chain 1 sites find / exp.num. .285 interval 1
TH num begin end exp.num. dist. mismatch site sequence
TD 1 6091 6100 .28500 0 1: 1 0 ATGCAAATAT
NM Mol.Cel.Biol. v62 n8 p1925 E2-PROTEINE OF PAPILLOMPAVIRUS
SQ acc-ggt
CC distance between two blocks of site: min = 6 max = 6
CC max mismatch in 1-st block: 0, in 2-nd block: 0
AI 00000 1 chain 3 sites find / exp.num. 1.823 interval 4
TH num begin end exp.num. dist. mismatch site sequence
TD 1 2427 2438 1.82349 6 0: 0 0 ACCattatcGGT
2 2557 2568 1.82349 6 0: 0 0 ACCtacgtgGGT
3 5237 5248 1.82349 6 0: 0 0 ACCtgcgcaGGT
AI 00000 2 chain 3 sites find / exp.num. 1.823 interval 4
TD 1 2438 2427 1.82349 6 0: 0 0 ACCgataatGGT
2 2568 2557 1.82349 6 0: 0 0 ACCcacgtaGGT
3 5248 5237 1.82349 6 0: 0 0 ACCtgcgcaGGT
NM EMBO J. v4 n10 p2669 H21.3.9 HSV-1/Herpesvirus samuiri
SQ taatgarattc
AI 00000 2 chain 1 sites find / exp.num. .114 interval 1
TH num begin end exp.num. dist. mismatch site sequence
TD 1 3374 3364 .11398 0 1: 1 0 TAATGAAATCC
NM LVa MOTIF MoMuLV ENHANCER (Mol Cell Biol v7 n3 p1101)
SQ gaacag
CC max mismatch : 0
AI 00000 1 chain 1 sites find / exp.num. 1.825 interval 4
TH num begin end exp.num. dist. mismatch site sequence
TD 1 6150 6155 1.82495 0 0: 0 0 GAACAG
AI 00000 2 chain 2 sites find / exp.num. 1.825 interval 4
TD 1 875 870 1.82495 0 0: 0 0 GAACAG
2 4401 4396 1.82495 0 0: 0 0 GAACAG
NM LVc MOTIF MoMuLV ENHANCER (Mol Cell Biol v7 n3 p1101)
SQ cctgc
CC max mismatch : 0
AI 00000 1 chain 4 sites find / exp.num. 7.301 interval 12
TH num begin end exp.num. dist. mismatch site sequence
TD 1 824 828 7.30078 0 0: 0 0 CCTGC
2 1079 1083 7.30078 0 0: 0 0 CCTGC
3 3166 3170 7.30078 0 0: 0 0 CCTGC
4 5238 5242 7.30078 0 0: 0 0 CCTGC
AI 00000 2 chain 3 sites find / exp.num. 7.301 interval 12
TD 1 1025 1021 7.30078 0 0: 0 0 CCTGC
2 4940 4936 7.30078 0 0: 0 0 CCTGC
3 5247 5243 7.30078 0 0: 0 0 CCTGC
NM INTERFERONE BETA ENHANCER (J.Mol Biol v204 n2 p221)
SQ aaxanngaaaggr
CC max mismatch : 1
AI 00000 1 chain 3 sites find / exp.num. .214 interval 1
TH num begin end exp.num. dist. mismatch site sequence
TD 1 3232 3244 .21366 0 1: 1 0 AATAGGGCAAGGG
2 5898 5910 .21366 0 1: 1 0 AAAACGGAAATGA
3 6524 6536 .21366 0 1: 1 0 AAAAACGAAACGG
NM Enchanser region of virus PV
SQ gctgtgqttttgca
AI 00000 2 chain 1 sites find / exp.num. .044 interval 0
TH num begin end exp.num. dist. mismatch site sequence
TD 1 4818 4805 .04351 0 2: 2 0 TCTGTGGTTATGCA
NM Enchanser region of virus MSV
SQ tctgtggtaaag
AI 00000 2 chain 1 sites find / exp.num. .281 interval 1
TH num begin end exp.num. dist. mismatch site sequence
TD 1 4818 4807 .28091 0 2: 2 0 TCTGTGGTTATG
NM Conservative elements of Ig enchanser (B,E1,E2,E3)
SQ gccatctggc
AI 00000 2 chain 1 sites find / exp.num. .221 interval 1
TH num begin end exp.num. dist. mismatch site sequence
TD 1 4552 4543 .22087 0 1: 1 0 GTCATCTGGC
NM enhancer core SV40
SQ tGTGgxxx
CC max mismatch : 0
AI 00000 1 chain 1 sites find / exp.num. .912 interval 3
TH num begin end exp.num. dist. mismatch site sequence
TD 1 1427 1434 .91223 0 0: 0 0 TGTGGTTA
AI 00000 2 chain 11 sites find / exp.num. .912 interval 3
TD 1 4816 4809 .91223 0 0: 0 0 TGTGGTTA
2 6714 6707 .91223 0 0: 0 0 TGTGGTTT
3 6728 6721 .91223 0 0: 0 0 TGTGGTTT
4 6742 6735 .91223 0 0: 0 0 TGTGGTTT
5 6756 6749 .91223 0 0: 0 0 TGTGGTTT
6 6770 6763 .91223 0 0: 0 0 TGTGGTTT
7 6784 6777 .91223 0 0: 0 0 TGTGGTTT
8 6798 6791 .91223 0 0: 0 0 TGTGGTTT
9 6812 6805 .91223 0 0: 0 0 TGTGGTTT
10 6826 6819 .91223 0 0: 0 0 TGTGGTTT
11 6841 6834 .91223 0 0: 0 0 TGTGGTTT
NM LVb MOTIF MoMuLV ENHANCER (Mol Cell Biol v7 n3 p1101)
SQ caggata
CC max mismatch : 0
AI 00000 1 chain 1 sites find / exp.num. .456 interval 2
TH num begin end exp.num. dist. mismatch site sequence
TD 1 6340 6346 .45618 0 0: 0 0 CAGGATA
NM Conservative elements of Ig enchanser (E1,E2,E3,E4,OCTA)
SQ gtcatgtggc
AI 00000 2 chain 1 sites find / exp.num. .221 interval 1
TH num begin end exp.num. dist. mismatch site sequence
TD 1 4552 4543 .22087 0 1: 1 0 GTCATCTGGC
NM Conservative elements of Ig enchanser (E1,E2,E3,E4,OCTA)
SQ atttgcat
AI 00000 2 chain 1 sites find / exp.num. .114 interval 1
TH num begin end exp.num. dist. mismatch site sequence
TD 1 6098 6091 .11403 0 0: 0 0 ATTTGCAT
NM Conservative elements of Ig enchanser (B,E1,E2,E3)
SQ cccatgtggt
CC max mismatch : 1
AI 00000 1 chain 1 sites find / exp.num. .221 interval 1
TH num begin end exp.num. dist. mismatch site sequence
TD 1 1373 1382 .22087 0 1: 1 0 CCAATGTGGT
NM NF1-FACtOR
SQ tgg-gccaa
CC distance between two blocks of site: min = 6 max = 7
CC max mismatch in 1-st block: 0, in 2-nd block: 0
AI 00000 1 chain 1 sites find / exp.num. .228 interval 1
TH num begin end exp.num. dist. mismatch site sequence
TD 1 5878 5891 .22786 6 0: 0 0 TGGtccactGCCAA
NM SP1
SQ gggcggr
CC max mismatch : 0
AI 00000 1 chain 1 sites find / exp.num. .912 interval 3
TH num begin end exp.num. dist. mismatch site sequence
TD 1 602 608 .91235 0 0: 0 0 GGGCGGA
NM NFY
SQ ccaat
CC max mismatch : 0
AI 00000 1 chain 9 sites find / exp.num. 7.301 interval 12
TH num begin end exp.num. dist. mismatch site sequence
TD 1 677 681 7.30078 0 0: 0 0 CCAAT
2 811 815 7.30078 0 0: 0 0 CCAAT
3 1373 1377 7.30078 0 0: 0 0 CCAAT
4 1898 1902 7.30078 0 0: 0 0 CCAAT
5 3120 3124 7.30078 0 0: 0 0 CCAAT
6 5292 5296 7.30078 0 0: 0 0 CCAAT
7 5960 5964 7.30078 0 0: 0 0 CCAAT
8 6029 6033 7.30078 0 0: 0 0 CCAAT
9 6855 6859 7.30078 0 0: 0 0 CCAAT
AI 00000 2 chain 9 sites find / exp.num. 7.301 interval 12
TD 1 218 214 7.30078 0 0: 0 0 CCAAT
2 1875 1871 7.30078 0 0: 0 0 CCAAT
3 2691 2687 7.30078 0 0: 0 0 CCAAT
4 3360 3356 7.30078 0 0: 0 0 CCAAT
5 3418 3414 7.30078 0 0: 0 0 CCAAT
6 3692 3688 7.30078 0 0: 0 0 CCAAT
7 5880 5876 7.30078 0 0: 0 0 CCAAT
8 6223 6219 7.30078 0 0: 0 0 CCAAT
9 7256 7252 7.30078 0 0: 0 0 CCAAT
NM CRF FACTOR(CCAAT-BOX BINDING FACTOR)
SQ tnnnCCatnnC
AI 00000 2 chain 3 sites find / exp.num. 1.824 interval 4
TH num begin end exp.num. dist. mismatch site sequence
TD 1 595 585 1.82373 0 0: 0 0 TTTCCCATCAC
2 2852 2842 1.82373 0 0: 0 0 TCGGCCATTAC
3 3355 3345 1.82373 0 0: 0 0 TATACCATCCC
NM USF II FACTOR OF ADENOVIRUS
SQ tgacgca
CC max mismatch : 0
AI 00000 1 chain 1 sites find / exp.num. .456 interval 2
TH num begin end exp.num. dist. mismatch site sequence
TD 1 1017 1023 .45618 0 0: 0 0 TGACGCA
NM ADENOVIRUS EPF FACtOR
SQ atgacgt
AI 00000 2 chain 1 sites find / exp.num. .456 interval 2
TH num begin end exp.num. dist. mismatch site sequence
TD 1 978 972 .45618 0 0: 0 0 ATGACGT
NM LARGE T PROTEIN OF PAPILLOMA VIRUS
SQ xgrggc
CC max mismatch : 0
AI 00000 1 chain 5 sites find / exp.num. 7.300 interval 12
TH num begin end exp.num. dist. mismatch site sequence
TD 1 600 605 7.29980 0 0: 0 0 AGGGGC
2 1511 1516 7.29980 0 0: 0 0 AGAGGC
3 1694 1699 7.29980 0 0: 0 0 AGAGGC
4 2883 2888 7.29980 0 0: 0 0 AGAGGC
5 3426 3431 7.29980 0 0: 0 0 TGAGGC
AI 00000 2 chain 1 sites find / exp.num. 7.300 interval 12
TD 1 4306 4301 7.29980 0 0: 0 0 TGGGGC
NM RPG FACTOR
SQ tgg-cca
CC distance between two blocks of site: min = 7 max = 7
CC max mismatch in 1-st block: 0, in 2-nd block: 0
AI 00000 1 chain 2 sites find / exp.num. 1.823 interval 4
TH num begin end exp.num. dist. mismatch site sequence
TD 1 5878 5890 1.82324 7 0: 0 0 TGGtccactgCCA
2 6307 6319 1.82324 7 0: 0 0 TGGaagattaCCA
AI 00000 2 chain 2 sites find / exp.num. 1.823 interval 4
TD 1 5890 5878 1.82324 7 0: 0 0 TGGcagtggaCCA
2 6319 6307 1.82324 7 0: 0 0 TGGtaatcttCCA
NM Binding site for the human transcription factor Sp1
SQ gggcgg
CC max mismatch : 0
AI 00000 1 chain 1 sites find / exp.num. 1.825 interval 4
TH num begin end exp.num. dist. mismatch site sequence
TD 1 602 607 1.82495 0 0: 0 0 GGGCGG
NM Site of initiation of translation in genes of animals
SQ zaannatgg
CC max mismatch : 0
AI 00000 1 chain 2 sites find / exp.num. .912 interval 3
TH num begin end exp.num. dist. mismatch site sequence
TD 1 1168 1176 .91211 0 0: 0 0 GAAGAATGG
2 1322 1330 .91211 0 0: 0 0 CAAAAATGG
NM Optimal sequence for initiation of translation by eukaryotik
SQ accatgg
CC max mismatch : 0
AI 00000 1 chain 1 sites find / exp.num. .456 interval 2
TH num begin end exp.num. dist. mismatch site sequence
TD 1 2899 2905 .45618 0 0: 0 0 ACCATGG
AI 00000 2 chain 1 sites find / exp.num. .456 interval 2
TD 1 2906 2900 .45618 0 0: 0 0 ACCATGG
NM Consensus sequence for eukaryotic translation initiation site
SQ ccrccatgg
AI 00000 2 chain 1 sites find / exp.num. .057 interval 1
TH num begin end exp.num. dist. mismatch site sequence
TD 1 2908 2900 .05701 0 0: 0 0 CCACCATGG
NM HEAt-SHOSK RESPONSIVE ELEMENT
SQ ttcnngaa
CC max mismatch : 0
TD 00000 1 chain 6 sites find / exp.num. 1.824 interval 4
TH num begin end exp.num. dist. mismatch site sequence
TD 1 834 841 1.82446 0 0: 0 0 TTCAAGAA
2 3440 3447 1.82446 0 0: 0 0 TTCAGGAA
3 4891 4898 1.82446 0 0: 0 0 TTCAAGAA
4 5686 5693 1.82446 0 0: 0 0 TTCAGGAA
5 5695 5702 1.82446 0 0: 0 0 TTCTAGAA
6 6276 6283 1.82446 0 0: 0 0 TTCATGAA
AI 00000 2 chain 6 sites find / exp.num. 1.824 interval 4
TD 1 841 834 1.82446 0 0: 0 0 TTCTTGAA
2 3447 3440 1.82446 0 0: 0 0 TTCCTGAA
3 4898 4891 1.82446 0 0: 0 0 TTCTTGAA
4 5693 5686 1.82446 0 0: 0 0 TTCCTGAA
5 5702 5695 1.82446 0 0: 0 0 TTCTAGAA
6 6283 6276 1.82446 0 0: 0 0 TTCATGAA
NM Heat-shock induction site A
SQ cnngaanttcnng
CC max mismatch : 0
AI 00000 1 chain 1 sites find / exp.num. .114 interval 1
TH num begin end exp.num. dist. mismatch site sequence
TD 1 5688 5700 .11395 0 0: 0 0 CAGGAATTTCTAG
AI 00000 2 chain 1 sites find / exp.num. .114 interval 1
TD 1 5700 5688 .11395 0 0: 0 0 CTAGAAATTCCTG
NM HEAVY METALL RESPONSIVE ELEMENT
SQ tgCrcyc
CC max mismatch : 0
AI 00000 1 chain 1 sites find / exp.num. 1.825 interval 4
TH num begin end exp.num. dist. mismatch site sequence
TD 1 3595 3601 1.82471 0 0: 0 0 TGCACTC
NM SRE ELEMENT OF HSP70 pnas v84 n8 p2203 H21.30
SQ aagggaaaag
CC max mismatch : 1
AI 00000 1 chain 3 sites find / exp.num. .221 interval 1
TH num begin end exp.num. dist. mismatch site sequence
TD 1 1915 1924 .22087 0 1: 1 0 AAAGGAAAAG
2 5120 5129 .22087 0 1: 1 0 AAGGGGAAAG
3 6443 6452 .22087 0 1: 1 0 AAGGCAAAAG
NM GLUCOCORTICOID RESPONSIVE ELEMENT
SQ gnnjCj-tGttCt
CC distance between two blocks of site: min = 2 max = 4
CC max mismatch in 1-st block: 0, in 2-nd block: 0
AI 00000 1 chain 1 sites find / exp.num. .192 interval 1
TH num begin end exp.num. dist. mismatch site sequence
TD 1 3539 3552 .19224 2 0: 0 0 GACACAcaTGTTCT
NM Consensus sequence of the recognition sites for the glucocorti
SQ tgttct
CC max mismatch : 0
AI 00000 1 chain 2 sites find / exp.num. 1.825 interval 4
TH num begin end exp.num. dist. mismatch site sequence
TD 1 3547 3552 1.82495 0 0: 0 0 TGTTCT
2 4397 4402 1.82495 0 0: 0 0 TGTTCT
NM INTERFERONE GAMMA RESPONSIVE ELEMENT
SQ agaagnmag
CC max mismatch : 0
AI 00000 1 chain 1 sites find / exp.num. .228 interval 1
TH num begin end exp.num. dist. mismatch site sequence
TD 1 5467 5475 .22803 0 0: 0 0 AGAAGCAAG
NM Consensus of putative activator sequence of immediate early
SQ taatgarat
CC max mismatch : 0
AI 00000 1 chain 2 sites find / exp.num. .057 interval 1
TH num begin end exp.num. dist. mismatch site sequence
TD 1 3478 3486 .05701 0 0: 0 0 TAATGAAAT
2 5422 5430 .05701 0 0: 0 0 TAATGAAAT
AI 00000 2 chain 1 sites find / exp.num. .057 interval 1
TD 1 3374 3366 .05701 0 0: 0 0 TAATGAAAT
NM PEA1 FACTOR (TPA inducible) (nature v332 n6161 p275)
SQ gtgactaa
CC max mismatch : 0
AI 00000 1 chain 1 sites find / exp.num. .114 interval 1
TH num begin end exp.num. dist. mismatch site sequence
TD 1 5603 5610 .11403 0 0: 0 0 GTGACTAA
NM Element of promotor of interferone GAMMA
SQ aagtgtaat-gagtnnnct
CC distance between two blocks of site: min = 4 max = 7
CC max mismatch in 1-st block: 2, in 2-nd block: 1
AI 00000 1 chain 1 sites find / exp.num. .186 interval 1
TH num begin end exp.num. dist. mismatch site sequence
TD 1 2934 2958 .18580 7 3: 2 1 AATTATAATagaggtgGAGGTTACT
NM LIVER-SPECIFIC FACtOR
SQ TCntacTC
AI 00000 2 chain 2 sites find / exp.num. .456 interval 2
TH num begin end exp.num. dist. mismatch site sequence
TD 1 231 224 .45612 0 0: 0 0 TCATACTC
2 7269 7262 .45612 0 0: 0 0 TCATACTC
NM CCCAC-BOX BINDING FACTOR
SQ cccac
CC max mismatch : 0
AI 00000 1 chain 3 sites find / exp.num. 7.301 interval 12
TH num begin end exp.num. dist. mismatch site sequence
TD 1 747 751 7.30078 0 0: 0 0 CCCAC
2 2998 3002 7.30078 0 0: 0 0 CCCAC
3 4120 4124 7.30078 0 0: 0 0 CCCAC
AI 00000 2 chain 2 sites find / exp.num. 7.301 interval 12
TD 1 2567 2563 7.30078 0 0: 0 0 CCCAC
2 2666 2662 7.30078 0 0: 0 0 CCCAC
NM GG.Ar.CC BOX BINDING FACTOR
SQ GGxxxxxxCC
CC max mismatch : 0
AI 00000 1 chain 1 sites find / exp.num. .456 interval 2
TH num begin end exp.num. dist. mismatch site sequence
TD 1 2823 2832 .45599 0 0: 0 0 GGAAATTACC
AI 00000 2 chain 1 sites find / exp.num. .456 interval 2
TD 1 2832 2823 .45599 0 0: 0 0 GGTAATTTCC
NM cycle histone MCB 85 5 2 380 389
SQ GAYTTC
CC max mismatch : 0
AI 00000 1 chain 3 sites find / exp.num. 3.650 interval 7
TH num begin end exp.num. dist. mismatch site sequence
TD 1 3365 3370 3.64990 0 0: 0 0 GATTTC
2 4197 4202 3.64990 0 0: 0 0 GATTTC
3 4787 4792 3.64990 0 0: 0 0 GATTTC
AI 00000 2 chain 4 sites find / exp.num. 3.650 interval 7
TD 1 941 936 3.64990 0 0: 0 0 GATTTC
2 4038 4033 3.64990 0 0: 0 0 GATTTC
3 4668 4663 3.64990 0 0: 0 0 GATTTC
4 6167 6162 3.64990 0 0: 0 0 GACTTC
NM cycle cell 86 45 4 537 544 trt1
SQ GCGAAA
CC max mismatch : 0
AI 00000 1 chain 1 sites find / exp.num. 1.825 interval 4
TH num begin end exp.num. dist. mismatch site sequence
TD 1 4911 4916 1.82495 0 0: 0 0 GCGAAA
NM Regulated element of gene LSP of D.melanogaster
EMBO J (1985) V 4 N P 3789 H
SQ aaaytaaagctggt
AI 00000 2 chain 1 sites find / exp.num. .044 interval 0
TH num begin end exp.num. dist. mismatch site sequence
TD 1 6578 6565 .04351 0 2: 2 0 AAACTAAATATGGT
NM Regulating element of promotor of contractive(KONTRAKTILNIY)
SQ cattcct
CC max mismatch : 0
AI 00000 1 chain 1 sites find / exp.num. .456 interval 2
TH num begin end exp.num. dist. mismatch site sequence
TD 1 3454 3460 .45618 0 0: 0 0 CATTCCT
NM Sequence repeated 5 times in the promoter of the mouse
SQ gaaga
CC max mismatch : 0
AI 00000 1 chain 14 sites find / exp.num. 7.301 interval 12
TH num begin end exp.num. dist. mismatch site sequence
TD 1 549 553 7.30078 0 0: 0 0 GAAGA
2 1168 1172 7.30078 0 0: 0 0 GAAGA
3 1677 1681 7.30078 0 0: 0 0 GAAGA
4 2106 2110 7.30078 0 0: 0 0 GAAGA
5 2163 2167 7.30078 0 0: 0 0 GAAGA
6 2166 2170 7.30078 0 0: 0 0 GAAGA
7 3106 3110 7.30078 0 0: 0 0 GAAGA
8 3410 3414 7.30078 0 0: 0 0 GAAGA
9 4136 4140 7.30078 0 0: 0 0 GAAGA
10 4638 4642 7.30078 0 0: 0 0 GAAGA
11 5465 5469 7.30078 0 0: 0 0 GAAGA
12 6103 6107 7.30078 0 0: 0 0 GAAGA
13 6309 6313 7.30078 0 0: 0 0 GAAGA
14 6420 6424 7.30078 0 0: 0 0 GAAGA
AI 00000 2 chain 2 sites find / exp.num. 7.301 interval 12
TD 1 4019 4015 7.30078 0 0: 0 0 GAAGA
2 5524 5520 7.30078 0 0: 0 0 GAAGA
NM "CCAAT box";one of a number of homology blocks at the 5'-ends
SQ grccaatnr
AI 00000 2 chain 1 sites find / exp.num. .456 interval 2
TH num begin end exp.num. dist. mismatch site sequence
TD 1 5882 5874 .45605 0 0: 0 0 GACCAATGG
NM Consensus sequence of repeated hexanucleotides within the 5'-
SQ aarqga
CC max mismatch : 0
AI 00000 1 chain 24 sites find / exp.num. 7.300 interval 12
TH num begin end exp.num. dist. mismatch site sequence
TD 1 376 381 7.29980 0 0: 0 0 AAATGA
2 456 461 7.29980 0 0: 0 0 AAAGGA
3 486 491 7.29980 0 0: 0 0 AAAGGA
4 929 934 7.29980 0 0: 0 0 AAATGA
5 1915 1920 7.29980 0 0: 0 0 AAAGGA
6 2215 2220 7.29980 0 0: 0 0 AAATGA
7 2240 2245 7.29980 0 0: 0 0 AAGGGA
8 2343 2348 7.29980 0 0: 0 0 AAAGGA
9 2417 2422 7.29980 0 0: 0 0 AAATGA
10 2630 2635 7.29980 0 0: 0 0 AAAGGA
11 2752 2757 7.29980 0 0: 0 0 AAATGA
12 3240 3245 7.29980 0 0: 0 0 AAGGGA
13 3507 3512 7.29980 0 0: 0 0 AAGTGA
14 3883 3888 7.29980 0 0: 0 0 AAATGA
15 4749 4754 7.29980 0 0: 0 0 AAAGGA
16 5011 5016 7.29980 0 0: 0 0 AAGTGA
17 5266 5271 7.29980 0 0: 0 0 AAATGA
18 5509 5514 7.29980 0 0: 0 0 AAGTGA
19 5620 5625 7.29980 0 0: 0 0 AAATGA
20 5712 5717 7.29980 0 0: 0 0 AAATGA
21 5755 5760 7.29980 0 0: 0 0 AAGTGA
22 5905 5910 7.29980 0 0: 0 0 AAATGA
23 7027 7032 7.29980 0 0: 0 0 AAAGGA
24 7414 7419 7.29980 0 0: 0 0 AAATGA
AI 00000 2 chain 6 sites find / exp.num. 7.300 interval 12
TD 1 1441 1436 7.29980 0 0: 0 0 AAAGGA
2 1942 1937 7.29980 0 0: 0 0 AAATGA
3 3425 3420 7.29980 0 0: 0 0 AAGTGA
4 4974 4969 7.29980 0 0: 0 0 AAGTGA
5 5930 5925 7.29980 0 0: 0 0 AAATGA
6 6945 6940 7.29980 0 0: 0 0 AAATGA
NM Sequence frequently found in the promoter region of histone H
SQ cgcac
CC max mismatch : 0
AI 00000 1 chain 1 sites find / exp.num. 7.301 interval 12
TH num begin end exp.num. dist. mismatch site sequence
TD 1 637 641 7.30078 0 0: 0 0 CGCAC
AI 00000 2 chain 1 sites find / exp.num. 7.301 interval 12
TD 1 2254 2250 7.30078 0 0: 0 0 CGCAC