ID DMMDG2 DE Drosophila retrotransposon 412 genome NM **** 1.(1) POLIMERASE II SQ tATAaa CC max mismatch : 0 AI 00000 1 chain 10 sites find / exp.num. 1.815 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 1094 1099 1.81519 0 0: 0 0 TATAAA 2 1100 1105 1.81519 0 0: 0 0 TATAAA 3 1111 1116 1.81519 0 0: 0 0 TATAAA 4 1277 1282 1.81519 0 0: 0 0 TATAAA 5 1383 1388 1.81519 0 0: 0 0 TATAAA 6 1699 1704 1.81519 0 0: 0 0 TATAAA 7 2025 2030 1.81519 0 0: 0 0 TATAAA 8 2475 2480 1.81519 0 0: 0 0 TATAAA 9 3954 3959 1.81519 0 0: 0 0 TATAAA 10 6837 6842 1.81519 0 0: 0 0 TATAAA AI 00000 2 chain 6 sites find / exp.num. 1.815 interval 4 TD 1 1280 1275 1.81519 0 0: 0 0 TATAAA 2 2028 2023 1.81519 0 0: 0 0 TATAAA 3 3512 3507 1.81519 0 0: 0 0 TATAAA 4 4464 4459 1.81519 0 0: 0 0 TATAAA 5 5514 5509 1.81519 0 0: 0 0 TATAAA 6 6797 6792 1.81519 0 0: 0 0 TATAAA NM **** 2.(1.1) Inr (ripl.POLIMERASE II) SQ NTCAQTY CC max mismatch : 0 AI 00000 1 chain 11 sites find / exp.num. 7.260 interval 12 TH num begin end exp.num. dist. mismatch site sequence TD 1 2038 2044 7.25977 0 0: 0 0 TTCAGTC 2 2442 2448 7.25977 0 0: 0 0 CTCAGTT 3 3192 3198 7.25977 0 0: 0 0 TTCATTC 4 3337 3343 7.25977 0 0: 0 0 TTCAGTC 5 3400 3406 7.25977 0 0: 0 0 TTCATTT 6 4082 4088 7.25977 0 0: 0 0 ATCAGTT 7 4400 4406 7.25977 0 0: 0 0 TTCATTC 8 4574 4580 7.25977 0 0: 0 0 TTCATTT 9 4656 4662 7.25977 0 0: 0 0 GTCATTC 10 6751 6757 7.25977 0 0: 0 0 TTCATTC 11 6788 6794 7.25977 0 0: 0 0 ATCATTT AI 00000 2 chain 11 sites find / exp.num. 7.260 interval 12 TD 1 1322 1316 7.25977 0 0: 0 0 TTCATTT 2 1337 1331 7.25977 0 0: 0 0 TTCAGTT 3 1649 1643 7.25977 0 0: 0 0 TTCATTC 4 1753 1747 7.25977 0 0: 0 0 TTCATTT 5 1827 1821 7.25977 0 0: 0 0 TTCATTT 6 2100 2094 7.25977 0 0: 0 0 TTCATTC 7 4417 4411 7.25977 0 0: 0 0 ATCATTC 8 5414 5408 7.25977 0 0: 0 0 GTCATTT 9 5450 5444 7.25977 0 0: 0 0 GTCATTC 10 5924 5918 7.25977 0 0: 0 0 TTCAGTT 11 6620 6614 7.25977 0 0: 0 0 CTCATTT NM **** 4.(9a) n=55;found upstream from the promoter of the pheasant conalbu- SQ ggaaa CC max mismatch : 0 AI 00000 1 chain 13 sites find / exp.num. 7.262 interval 12 TH num begin end exp.num. dist. mismatch site sequence TD 1 602 606 7.26172 0 0: 0 0 GGAAA 2 1356 1360 7.26172 0 0: 0 0 GGAAA 3 1791 1795 7.26172 0 0: 0 0 GGAAA 4 2848 2852 7.26172 0 0: 0 0 GGAAA 5 2986 2990 7.26172 0 0: 0 0 GGAAA 6 3031 3035 7.26172 0 0: 0 0 GGAAA 7 3659 3663 7.26172 0 0: 0 0 GGAAA 8 5082 5086 7.26172 0 0: 0 0 GGAAA 9 5280 5284 7.26172 0 0: 0 0 GGAAA 10 5334 5338 7.26172 0 0: 0 0 GGAAA 11 5472 5476 7.26172 0 0: 0 0 GGAAA 12 5605 5609 7.26172 0 0: 0 0 GGAAA 13 5821 5825 7.26172 0 0: 0 0 GGAAA AI 00000 2 chain 6 sites find / exp.num. 7.262 interval 12 TD 1 3424 3420 7.26172 0 0: 0 0 GGAAA 2 3538 3534 7.26172 0 0: 0 0 GGAAA 3 3861 3857 7.26172 0 0: 0 0 GGAAA 4 4213 4209 7.26172 0 0: 0 0 GGAAA 5 6784 6780 7.26172 0 0: 0 0 GGAAA 6 6807 6803 7.26172 0 0: 0 0 GGAAA NM **** 5.(8a) consensus sequence of Drosophila heat shock gene promoters SQ ctggaatnttctag AI 00000 2 chain 1 sites find / exp.num. .082 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 2651 2638 .08212 0 2: 2 0 GTGGCATGTTCTAG NM **** 6.(5) POLY A SINGLE BLOCK SQ AATAAA CC max mismatch : 0 AI 00000 1 chain 31 sites find / exp.num. 1.815 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 36 41 1.81519 0 0: 0 0 AATAAA 2 406 411 1.81519 0 0: 0 0 AATAAA 3 671 676 1.81519 0 0: 0 0 AATAAA 4 1084 1089 1.81519 0 0: 0 0 AATAAA 5 1338 1343 1.81519 0 0: 0 0 AATAAA 6 1448 1453 1.81519 0 0: 0 0 AATAAA 7 1452 1457 1.81519 0 0: 0 0 AATAAA 8 1538 1543 1.81519 0 0: 0 0 AATAAA 9 1628 1633 1.81519 0 0: 0 0 AATAAA 10 1682 1687 1.81519 0 0: 0 0 AATAAA 11 1686 1691 1.81519 0 0: 0 0 AATAAA 12 1752 1757 1.81519 0 0: 0 0 AATAAA 13 2032 2037 1.81519 0 0: 0 0 AATAAA 14 2085 2090 1.81519 0 0: 0 0 AATAAA 15 2803 2808 1.81519 0 0: 0 0 AATAAA 16 3300 3305 1.81519 0 0: 0 0 AATAAA 17 3305 3310 1.81519 0 0: 0 0 AATAAA 18 3825 3830 1.81519 0 0: 0 0 AATAAA 19 4058 4063 1.81519 0 0: 0 0 AATAAA 20 5655 5660 1.81519 0 0: 0 0 AATAAA 21 5705 5710 1.81519 0 0: 0 0 AATAAA 22 6057 6062 1.81519 0 0: 0 0 AATAAA 23 6194 6199 1.81519 0 0: 0 0 AATAAA 24 6426 6431 1.81519 0 0: 0 0 AATAAA 25 6546 6551 1.81519 0 0: 0 0 AATAAA 26 6705 6710 1.81519 0 0: 0 0 AATAAA 27 6878 6883 1.81519 0 0: 0 0 AATAAA 28 6884 6889 1.81519 0 0: 0 0 AATAAA 29 6890 6895 1.81519 0 0: 0 0 AATAAA 30 6995 7000 1.81519 0 0: 0 0 AATAAA 31 7365 7370 1.81519 0 0: 0 0 AATAAA AI 00000 2 chain 4 sites find / exp.num. 1.815 interval 4 TD 1 3362 3357 1.81519 0 0: 0 0 AATAAA 2 5131 5126 1.81519 0 0: 0 0 AATAAA 3 5464 5459 1.81519 0 0: 0 0 AATAAA 4 6104 6099 1.81519 0 0: 0 0 AATAAA NM **** 7.(4) POLY A SIGNAL SQ AATAMA-ygtgttyy CC distance between two blocks of site: min = 20 max = 30 CC max mismatch in 1-st block: 0, in 2-nd block: 1 AI 00000 1 chain 2 sites find / exp.num. .092 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1448 1485 .09221 24 1: 0 1 AATAAAtaaagtagaagtccaaaatgcagaCTTGTTCT 2 1452 1485 .09221 20 1: 0 1 AATAAAgtagaagtccaaaatgcagaCTTGTTCT NM **** 8.(14b) One of two related variants of a presumed transcription termi SQ tatgt CC max mismatch : 0 AI 00000 1 chain 14 sites find / exp.num. 7.262 interval 12 TH num begin end exp.num. dist. mismatch site sequence TD 1 6 10 7.26172 0 0: 0 0 TATGT 2 75 79 7.26172 0 0: 0 0 TATGT 3 81 85 7.26172 0 0: 0 0 TATGT 4 87 91 7.26172 0 0: 0 0 TATGT 5 414 418 7.26172 0 0: 0 0 TATGT 6 3678 3682 7.26172 0 0: 0 0 TATGT 7 4777 4781 7.26172 0 0: 0 0 TATGT 8 5455 5459 7.26172 0 0: 0 0 TATGT 9 6016 6020 7.26172 0 0: 0 0 TATGT 10 6965 6969 7.26172 0 0: 0 0 TATGT 11 7034 7038 7.26172 0 0: 0 0 TATGT 12 7040 7044 7.26172 0 0: 0 0 TATGT 13 7046 7050 7.26172 0 0: 0 0 TATGT 14 7373 7377 7.26172 0 0: 0 0 TATGT AI 00000 2 chain 22 sites find / exp.num. 7.262 interval 12 TD 1 192 188 7.26172 0 0: 0 0 TATGT 2 199 195 7.26172 0 0: 0 0 TATGT 3 207 203 7.26172 0 0: 0 0 TATGT 4 211 207 7.26172 0 0: 0 0 TATGT 5 252 248 7.26172 0 0: 0 0 TATGT 6 1300 1296 7.26172 0 0: 0 0 TATGT 7 2772 2768 7.26172 0 0: 0 0 TATGT 8 3182 3178 7.26172 0 0: 0 0 TATGT 9 4503 4499 7.26172 0 0: 0 0 TATGT 10 4769 4765 7.26172 0 0: 0 0 TATGT 11 5125 5121 7.26172 0 0: 0 0 TATGT 12 5843 5839 7.26172 0 0: 0 0 TATGT 13 6290 6286 7.26172 0 0: 0 0 TATGT 14 6369 6365 7.26172 0 0: 0 0 TATGT 15 6438 6434 7.26172 0 0: 0 0 TATGT 16 6461 6457 7.26172 0 0: 0 0 TATGT 17 6581 6577 7.26172 0 0: 0 0 TATGT 18 7151 7147 7.26172 0 0: 0 0 TATGT 19 7158 7154 7.26172 0 0: 0 0 TATGT 20 7166 7162 7.26172 0 0: 0 0 TATGT 21 7170 7166 7.26172 0 0: 0 0 TATGT 22 7211 7207 7.26172 0 0: 0 0 TATGT NM **** 10.(18) ORI HUM SQ taaatttagt CC max mismatch : 1 AI 00000 1 chain 2 sites find / exp.num. .220 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1385 1394 .21969 0 1: 1 0 TAAAATTAGT 2 2034 2043 .21969 0 1: 1 0 TAAATTCAGT NM **** 11.(14) AD ORI SQ ataatatacc CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .220 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 831 840 .21969 0 1: 1 0 AAAATATACC NM **** 12.(15) HSV ORI SQ atatatatat CC max mismatch : 1 AI 00000 1 chain 13 sites find / exp.num. .220 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 407 416 .21969 0 1: 1 0 ATAAATATAT 2 1085 1094 .21969 0 1: 1 0 ATAAATATAT 3 1087 1096 .21969 0 1: 1 0 AAATATATAT 4 1089 1098 .21969 0 1: 1 0 ATATATATAA 5 1091 1100 .21969 0 1: 1 0 ATATATAAAT 6 1093 1102 .21969 0 1: 1 0 ATATAAATAT 7 1115 1124 .21969 0 1: 1 0 AAATATATAT 8 1117 1126 .21969 0 1: 1 0 ATATATATAG 9 1119 1128 .21969 0 1: 1 0 ATATATAGAT 10 3902 3911 .21969 0 1: 1 0 ATATATAGAT 11 3904 3913 .21969 0 1: 1 0 ATATAGATAT 12 3906 3915 .21969 0 1: 1 0 ATAGATATAT 13 7366 7375 .21969 0 1: 1 0 ATAAATATAT AI 00000 2 chain 13 sites find / exp.num. .220 interval 1 TD 1 416 407 .21969 0 1: 1 0 ATATATTTAT 2 1094 1085 .21969 0 1: 1 0 ATATATTTAT 3 1096 1087 .21969 0 1: 1 0 ATATATATTT 4 1098 1089 .21969 0 1: 1 0 TTATATATAT 5 1100 1091 .21969 0 1: 1 0 ATTTATATAT 6 1102 1093 .21969 0 1: 1 0 ATATTTATAT 7 1124 1115 .21969 0 1: 1 0 ATATATATTT 8 1126 1117 .21969 0 1: 1 0 CTATATATAT 9 1128 1119 .21969 0 1: 1 0 ATCTATATAT 10 3911 3902 .21969 0 1: 1 0 ATCTATATAT 11 3913 3904 .21969 0 1: 1 0 ATATCTATAT 12 3915 3906 .21969 0 1: 1 0 ATATATCTAT 13 7375 7366 .21969 0 1: 1 0 ATATATTTAT NM **** 13.(19) ARS Y XE DM SQ xtttatrtttx CC max mismatch : 1 AI 00000 1 chain 6 sites find / exp.num. .397 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 78 88 .39680 0 1: 1 0 GTTTATGTTTA 2 84 94 .39680 0 1: 1 0 GTTTATGTTTA 3 2016 2026 .39680 0 1: 1 0 ATTAATATTTA 4 6772 6782 .39680 0 1: 1 0 ACTTATATTTT 5 7037 7047 .39680 0 1: 1 0 GTTTATGTTTA 6 7043 7053 .39680 0 1: 1 0 GTTTATGTTTA AI 00000 2 chain 23 sites find / exp.num. .397 interval 2 TD 1 1096 1086 .39680 0 1: 1 0 ATATATATTTA 2 1100 1090 .39680 0 1: 1 0 ATTTATATATA 3 1106 1096 .39680 0 1: 1 0 CTTTATATTTA 4 1117 1107 .01417 0 0: 0 0 TTTTATATTTA 5 1124 1114 .39680 0 1: 1 0 ATATATATTTT 6 1303 1293 .39680 0 1: 1 0 ATTTATGTTTG 7 1389 1379 .01417 0 0: 0 0 TTTTATATTTT 8 1552 1542 .39680 0 1: 1 0 TTGTATATTTT 9 1694 1684 .39680 0 1: 1 0 TTTTTTATTTA 10 1705 1695 .01417 0 0: 0 0 TTTTATATTTT 11 2038 2028 .39680 0 1: 1 0 ATTTATTTTTT 12 3474 3464 .39680 0 1: 1 0 AATTATATTTT 13 4071 4061 .39680 0 1: 1 0 TTTTATCTTTT 14 5646 5636 .39680 0 1: 1 0 TTTTAAATTTA 15 5668 5658 .39680 0 1: 1 0 TTTAATATTTT 16 5846 5836 .39680 0 1: 1 0 TTTTATGTATT 17 6202 6192 .39680 0 1: 1 0 TTTTTTATTTT 18 6209 6199 .39680 0 1: 1 0 TGTTATATTTT 19 6719 6709 .39680 0 1: 1 0 TTTTTTGTTTT 20 6886 6876 .39680 0 1: 1 0 ATTTTTATTTT 21 6890 6880 .39680 0 1: 1 0 TTTTATTTTTA 22 6892 6882 .39680 0 1: 1 0 ATTTTTATTTT 23 6896 6886 .39680 0 1: 1 0 TTTTATTTTTA NM **** 14.(24) ARS yeast, xenopus SQ xttttatrtttx CC max mismatch : 1 AI 00000 1 chain 4 sites find / exp.num. .110 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 77 88 .10982 0 1: 1 0 TGTTTATGTTTA 2 83 94 .10982 0 1: 1 0 TGTTTATGTTTA 3 7036 7047 .10982 0 1: 1 0 TGTTTATGTTTA 4 7042 7053 .10982 0 1: 1 0 TGTTTATGTTTA AI 00000 2 chain 12 sites find / exp.num. .110 interval 1 TD 1 1107 1096 .10982 0 1: 1 0 ACTTTATATTTA 2 1118 1107 .00354 0 0: 0 0 ATTTTATATTTA 3 1390 1379 .00354 0 0: 0 0 ATTTTATATTTT 4 1553 1542 .10982 0 1: 1 0 TTTGTATATTTT 5 1695 1684 .10982 0 1: 1 0 TTTTTTTATTTA 6 1706 1695 .10982 0 1: 1 0 GTTTTATATTTT 7 4072 4061 .10982 0 1: 1 0 ATTTTATCTTTT 8 5647 5636 .10982 0 1: 1 0 TTTTTAAATTTA 9 6203 6192 .10982 0 1: 1 0 ATTTTTTATTTT 10 6210 6199 .10982 0 1: 1 0 ATGTTATATTTT 11 6891 6880 .10982 0 1: 1 0 TTTTTATTTTTA 12 6897 6886 .10982 0 1: 1 0 ATTTTATTTTTA NM **** 15.(22) SAR A BOX OF DROSOFILA j mol biol v198 n 4 p677 &cell v46 n4 SQ aataaayaaa CC max mismatch : 1 AI 00000 1 chain 21 sites find / exp.num. .411 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 32 41 .41103 0 1: 1 0 ATTAAATAAA 2 406 415 .41103 0 1: 1 0 AATAAATATA 3 1084 1093 .41103 0 1: 1 0 AATAAATATA 4 1322 1331 .41103 0 1: 1 0 AATAAGTAAA 5 1448 1457 .01417 0 0: 0 0 AATAAATAAA 6 1544 1553 .41103 0 1: 1 0 AATATACAAA 7 1682 1691 .01417 0 0: 0 0 AATAAATAAA 8 1686 1695 .41103 0 1: 1 0 AATAAAAAAA 9 1748 1757 .41103 0 1: 1 0 AATGAATAAA 10 2028 2037 .41103 0 1: 1 0 AAAAAATAAA 11 2475 2484 .41103 0 1: 1 0 TATAAACAAA 12 4054 4063 .41103 0 1: 1 0 AATTAATAAA 13 5630 5639 .41103 0 1: 1 0 AATAGATAAA 14 5705 5714 .41103 0 1: 1 0 AATAAATAAT 15 5836 5845 .41103 0 1: 1 0 AATACATAAA 16 6542 6551 .41103 0 1: 1 0 AAAAAATAAA 17 6546 6555 .41103 0 1: 1 0 AATAAAGAAA 18 6714 6723 .41103 0 1: 1 0 AAAAAACAAA 19 6909 6918 .41103 0 1: 1 0 AATAATCAAA 20 6991 7000 .41103 0 1: 1 0 ATTAAATAAA 21 7365 7374 .41103 0 1: 1 0 AATAAATATA AI 00000 2 chain 1 sites find / exp.num. .411 interval 2 TD 1 5464 5455 .41103 0 1: 1 0 AATAAACATA NM **** 16.(23) SAR T BOX OF DROSOFILA cell v46 n4 p521 SQ TtXTxTTXtt CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .057 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1243 1252 .05669 0 0: 0 0 TTTTTTTTTT AI 00000 2 chain 14 sites find / exp.num. .057 interval 1 TD 1 1679 1670 .05669 0 0: 0 0 TTTTTTTTTT 2 1680 1671 .05669 0 0: 0 0 TTTTTTTTTT 3 1683 1674 .05669 0 0: 0 0 TTATTTTTTT 4 1695 1686 .05669 0 0: 0 0 TTTTTTTATT 5 1698 1689 .05669 0 0: 0 0 TTTTTTTTTT 6 1703 1694 .05669 0 0: 0 0 TTATATTTTT 7 1739 1730 .05669 0 0: 0 0 TTTTTTTTTT 8 3309 3300 .05669 0 0: 0 0 TTATTTTATT 9 3472 3463 .05669 0 0: 0 0 TTATATTTTT 10 6207 6198 .05669 0 0: 0 0 TTATATTTTT 11 6550 6541 .05669 0 0: 0 0 TTATTTTTTT 12 6890 6881 .05669 0 0: 0 0 TTTTATTTTT 13 6896 6887 .05669 0 0: 0 0 TTTTATTTTT 14 6899 6890 .05669 0 0: 0 0 TTATTTTATT NM **** 18(32).optimal sequence for initiation of translation by eukaryotik SQ accatgg CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .454 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 2248 2254 .45374 0 0: 0 0 ACCATGG NM **** 60(11). INTRON-EXON JUNCTION SQ yyyyynyAGG AI 00000 2 chain 1 sites find / exp.num. 1.814 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 2601 2592 1.81421 0 0: 0 0 TTTTCTCAGG NM **** 61(12). lar+3' SQ YTaAT-yyyyaG CC distance between two blocks of site: min = 16 max = 36 CC max mismatch in 1-st block: 0, in 2-nd block: 0 AI 00000 1 chain 2 sites find / exp.num. 1.186 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 2017 2049 1.18625 22 0: 0 0 TTAATatttataaaaaataaattcagtCTCCAG 2 4848 4885 1.18625 27 0: 0 0 CTAATtaacccaacactcttgcagtacccagaCTTCAG AI 00000 2 chain 5 sites find / exp.num. 1.186 interval 3 TD 1 2008 1979 1.18625 19 0: 0 0 TTAATgtcaccagtaggttcaaagCCTTAG 2 2020 1979 1.18625 31 0: 0 0 TTAATttttctcttaatgtcaccagtaggttcaaagCCTTAG 3 2414 2375 1.18625 29 0: 0 0 TTAATgacctcaactgcaatgtcttcaaatggtcCCTTAG 4 5292 5265 1.18625 17 0: 0 0 TTAATatatttccagttatatcTTTTAG 5 6636 6609 1.18625 17 0: 0 0 CTAATttatgacctacctcattTCTTAG NM **** 64(17). ORI MT !!! SQ trtgytytr CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. .454 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 453 461 .45361 0 0: 0 0 TGTGTTCTG 2 7412 7420 .45361 0 0: 0 0 TGTGTTCTG AI 00000 2 chain 1 sites find / exp.num. .454 interval 2 TD 1 5898 5890 .45361 0 0: 0 0 TGTGCTTTG NM **** 67(26).ARS-fragment of chlamydomonada SQ raattttaaat CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .113 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 3721 3731 .00354 0 0: 0 0 GAATTTTAAAT AI 00000 2 chain 2 sites find / exp.num. .113 interval 1 TD 1 3536 3526 .11337 0 1: 1 0 AAATTTCAAAT 2 4844 4834 .11337 0 1: 1 0 AGATTTTAAAT NM **** 68(27).ARS of chloroplasts SQ anrtnaccaagt CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .411 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 6022 6033 .41092 0 1: 1 0 ATTTAACCAAGT AI 00000 2 chain 1 sites find / exp.num. .411 interval 2 TD 1 6938 6927 .41092 0 1: 1 0 ACGTAACCTAGT NM **** 69(28).ARS of human SQ tattyytaaatttagtxt AI 00000 2 chain 4 sites find / exp.num. .144 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1347 1330 .14404 0 4: 4 0 TACTTTTATTTTCAGTTT 2 1697 1680 .14404 0 4: 4 0 TTTTTTTTTATTTATTAT 3 5649 5632 .01416 0 3: 3 0 TATTTTTAAATTTATCTA 4 6893 6876 .01416 0 3: 3 0 TATTTTTATTTTTATTTT NM **** 71(31).sequence repeated nontandemly several times in the origin of t SQ gcctc AI 00000 2 chain 5 sites find / exp.num. 7.262 interval 12 TH num begin end exp.num. dist. mismatch site sequence TD 1 2672 2668 7.26172 0 0: 0 0 GCCTC 2 2883 2879 7.26172 0 0: 0 0 GCCTC 3 2907 2903 7.26172 0 0: 0 0 GCCTC 4 3021 3017 7.26172 0 0: 0 0 GCCTC 5 3042 3038 7.26172 0 0: 0 0 GCCTC NM **** 72(33).consensus sequence of the cores of autonomously replicating SQ xaaayataaax CC max mismatch : 1 AI 00000 1 chain 23 sites find / exp.num. .397 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 1086 1096 .39680 0 1: 1 0 TAAATATATAT 2 1090 1100 .39680 0 1: 1 0 TATATATAAAT 3 1096 1106 .39680 0 1: 1 0 TAAATATAAAG 4 1107 1117 .01417 0 0: 0 0 TAAATATAAAA 5 1114 1124 .39680 0 1: 1 0 AAAATATATAT 6 1293 1303 .39680 0 1: 1 0 CAAACATAAAT 7 1379 1389 .01417 0 0: 0 0 AAAATATAAAA 8 1542 1552 .39680 0 1: 1 0 AAAATATACAA 9 1684 1694 .39680 0 1: 1 0 TAAATAAAAAA 10 1695 1705 .01417 0 0: 0 0 AAAATATAAAA 11 2028 2038 .39680 0 1: 1 0 AAAAAATAAAT 12 3464 3474 .39680 0 1: 1 0 AAAATATAATT 13 4061 4071 .39680 0 1: 1 0 AAAAGATAAAA 14 5636 5646 .39680 0 1: 1 0 TAAATTTAAAA 15 5658 5668 .39680 0 1: 1 0 AAAATATTAAA 16 5836 5846 .39680 0 1: 1 0 AATACATAAAA 17 6192 6202 .39680 0 1: 1 0 AAAATAAAAAA 18 6199 6209 .39680 0 1: 1 0 AAAATATAACA 19 6709 6719 .39680 0 1: 1 0 AAAACAAAAAA 20 6876 6886 .39680 0 1: 1 0 AAAATAAAAAT 21 6880 6890 .39680 0 1: 1 0 TAAAAATAAAA 22 6882 6892 .39680 0 1: 1 0 AAAATAAAAAT 23 6886 6896 .39680 0 1: 1 0 TAAAAATAAAA AI 00000 2 chain 6 sites find / exp.num. .397 interval 2 TD 1 88 78 .39680 0 1: 1 0 TAAACATAAAC 2 94 84 .39680 0 1: 1 0 TAAACATAAAC 3 2026 2016 .39680 0 1: 1 0 TAAATATTAAT 4 6782 6772 .39680 0 1: 1 0 AAAATATAAGT 5 7047 7037 .39680 0 1: 1 0 TAAACATAAAC 6 7053 7043 .39680 0 1: 1 0 TAAACATAAAC NM **** 74(2a).Promotor of RNA polymerase 1 (mouse, rat) SQ atcttt-tattg CC distance between two blocks of site: min = 16 max = 19 CC max mismatch in 1-st block: 1, in 2-nd block: 0 AI 00000 1 chain 1 sites find / exp.num. .134 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 6827 6853 .00707 16 0: 0 0 ATCTTTgcattataaaatcaacTATTG NM **** 75(3a).Promotor of RNA polymerase 1 (human) SQ atcttt-ttttgg AI 00000 2 chain 2 sites find / exp.num. .042 interval 0 TH num begin end exp.num. dist. mismatch site sequence TD 1 4153 4120 .04195 22 1: 1 0 TTCTTTttatcagaattcgggcttgactTTTTGG 2 5905 5873 .04195 21 1: 1 0 GTCTTTgtgtgctttgttgtttttgctTTTTGG NM **** 78(6a).Consensus sequence of promotor genes for RNA polymerase 2 of a SQ ggycaatct-xtataxa AI 00000 2 chain 2 sites find / exp.num. .108 interval 0 TH num begin end exp.num. dist. mismatch site sequence TD 1 305 236 .10790 54 2: 2 0 GGCTAATCCgcgtagctgcgctgccgggtacgccagcagcggagcggcgttcttatgtatatcTTATATA 2 7264 7195 .10790 54 2: 2 0 GGCTAATCCgcgtagctgcgctgccgggtacgccagcagcggagcggcgttcttatgtatatcTTATATA NM **** 85(16a).one of two suggested consensus sequences for RNA-polymerase I SQ ggttgg AI 00000 2 chain 1 sites find / exp.num. 1.815 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 2064 2059 1.81519 0 0: 0 0 GGTTGG NM **** 100(32a).consensus of the TATA-box of Dictyostelium promoters SQ tataaaxa CC max mismatch : 0 AI 00000 1 chain 3 sites find / exp.num. .227 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1094 1101 .22684 0 0: 0 0 TATAAATA 2 1277 1284 .22684 0 0: 0 0 TATAAATA 3 2025 2032 .22684 0 0: 0 0 TATAAAAA AI 00000 2 chain 1 sites find / exp.num. .227 interval 1 TD 1 2028 2021 .22684 0 0: 0 0 TATAAATA NM **** 101(33a)."Goldberg-Hogness box";consensus sequence belonging to eukar SQ tataxax CC max mismatch : 0 AI 00000 1 chain 15 sites find / exp.num. 1.815 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 236 242 1.81494 0 0: 0 0 TATATAA 2 1090 1096 1.81494 0 0: 0 0 TATATAT 3 1092 1098 1.81494 0 0: 0 0 TATATAA 4 1094 1100 1.81494 0 0: 0 0 TATAAAT 5 1111 1117 1.81494 0 0: 0 0 TATAAAA 6 1118 1124 1.81494 0 0: 0 0 TATATAT 7 1277 1283 1.81494 0 0: 0 0 TATAAAT 8 1383 1389 1.81494 0 0: 0 0 TATAAAA 9 1699 1705 1.81494 0 0: 0 0 TATAAAA 10 2025 2031 1.81494 0 0: 0 0 TATAAAA 11 3541 3547 1.81494 0 0: 0 0 TATATAT 12 5570 5576 1.81494 0 0: 0 0 TATATAT 13 6451 6457 1.81494 0 0: 0 0 TATATAA 14 6837 6843 1.81494 0 0: 0 0 TATAAAA 15 7195 7201 1.81494 0 0: 0 0 TATATAA AI 00000 2 chain 13 sites find / exp.num. 1.815 interval 4 TD 1 241 235 1.81494 0 0: 0 0 TATATAT 2 1095 1089 1.81494 0 0: 0 0 TATATAT 3 1097 1091 1.81494 0 0: 0 0 TATATAT 4 1123 1117 1.81494 0 0: 0 0 TATATAT 5 1125 1119 1.81494 0 0: 0 0 TATATAT 6 1280 1274 1.81494 0 0: 0 0 TATAAAA 7 1745 1739 1.81494 0 0: 0 0 TATATAT 8 2028 2022 1.81494 0 0: 0 0 TATAAAT 9 3546 3540 1.81494 0 0: 0 0 TATATAT 10 3908 3902 1.81494 0 0: 0 0 TATATAT 11 6456 6450 1.81494 0 0: 0 0 TATATAT 12 6797 6791 1.81494 0 0: 0 0 TATAAAT 13 7200 7194 1.81494 0 0: 0 0 TATATAT NM **** 103(36a).consensus sequence of a tentative transcription initiation SQ aagtta CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. 1.815 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 1762 1767 1.81519 0 0: 0 0 AAGTTA 2 4554 4559 1.81519 0 0: 0 0 AAGTTA AI 00000 2 chain 4 sites find / exp.num. 1.815 interval 4 TD 1 56 51 1.81519 0 0: 0 0 AAGTTA 2 2246 2241 1.81519 0 0: 0 0 AAGTTA 3 6925 6920 1.81519 0 0: 0 0 AAGTTA 4 7015 7010 1.81519 0 0: 0 0 AAGTTA NM **** 104(37a).sequence frequently found in the promoter region of histone SQ ccgca AI 00000 2 chain 1 sites find / exp.num. 7.262 interval 12 TH num begin end exp.num. dist. mismatch site sequence TD 1 4689 4685 7.26172 0 0: 0 0 CCGCA NM **** 108(1b).Binding-site for factor NFI, which stimulates replication SQ tggmn-gccaa CC distance between two blocks of site: min = 3 max = 6 CC max mismatch in 1-st block: 0, in 2-nd block: 0 AI 00000 1 chain 1 sites find / exp.num. .227 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1429 1444 .22664 6 0: 0 0 TGGACtctacaGCCAA NM **** 113(6b).Sequence located at the 3'-ends of yeast genes,presumably SQ tttttata AI 00000 2 chain 1 sites find / exp.num. .113 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 2032 2025 .11342 0 0: 0 0 TTTTTATA NM **** 119(13b).One of two related variants of a presumed transcription term SQ tagtggtggtgggct AI 00000 2 chain 1 sites find / exp.num. .092 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 6229 6215 .09182 0 3: 3 0 TGGTGGTGATGAGCT NM **** 121(16b).Consensus of a presumed polyadenylation signal in Trypanosom SQ aaaattyt AI 00000 2 chain 1 sites find / exp.num. .227 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 4896 4889 .22684 0 0: 0 0 AAAATTCT NM **** 124(22b).Signal of formiration 3'-end in mnRNA SQ gttyn-aaarryaga CC distance between two blocks of site: min = 0 max = 3 CC max mismatch in 1-st block: 0, in 2-nd block: 1 AI 00000 1 chain 3 sites find / exp.num. .156 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 4489 4503 .15579 1 1: 0 1 GTTCCgAAAAACATA 2 6726 6740 .00708 1 0: 0 0 GTTCAtAAAGATAGA 3 6856 6872 .15579 3 1: 0 1 GTTCAaacAAAAACACA NM **** 125(23b).Consensus mRNA cap site in Drosophila Cell 29,1027 (Gnomic) SQ yatcxgq CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. 3.630 interval 7 TH num begin end exp.num. dist. mismatch site sequence TD 1 4081 4087 3.62988 0 0: 0 0 CATCAGT AI 00000 2 chain 4 sites find / exp.num. 3.630 interval 7 TD 1 1057 1051 3.62988 0 0: 0 0 TATCAGG 2 2052 2046 3.62988 0 0: 0 0 TATCTGG 3 4812 4806 3.62988 0 0: 0 0 CATCTGT 4 4911 4905 3.62988 0 0: 0 0 CATCTGT NM **** 126(24b)."Cap box";one of a number of homology blocks at the 5'-ends SQ ycattcr CC max mismatch : 0 AI 00000 1 chain 4 sites find / exp.num. 1.815 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 3193 3199 1.81494 0 0: 0 0 TCATTCA 2 4657 4663 1.81494 0 0: 0 0 TCATTCA 3 4794 4800 1.81494 0 0: 0 0 CCATTCG 4 6752 6758 1.81494 0 0: 0 0 TCATTCA AI 00000 2 chain 3 sites find / exp.num. 1.815 interval 4 TD 1 1648 1642 1.81494 0 0: 0 0 TCATTCA 2 2099 2093 1.81494 0 0: 0 0 TCATTCA 3 5449 5443 1.81494 0 0: 0 0 TCATTCA NM **** 127(25b).RNA processing in mitochondria NAR 13,31(Gnomic) SQ attcatac CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .113 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 4826 4833 .11342 0 0: 0 0 ATTCATAC NM **** 129(27b).Consensus of a presumed transcription processing signal of m SQ ataatattctt AI 00000 2 chain 2 sites find / exp.num. .060 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 5485 5475 .06023 0 1: 1 0 ATAATTTTCTT 2 6560 6550 .06023 0 1: 1 0 ATAATTTTCTT NM **** 131(29b).Site of splising of vertebrates 3'-end: PNAS (1984) V 81 N 2 SQ yyyyyncagg AI 00000 2 chain 1 sites find / exp.num. .907 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 2601 2592 .90710 0 0: 0 0 TTTTCTCAGG NM **** 134(35b).Site of splising of plants 3'-end: NAR (1986) V 14 N 24 P 95 SQ tttkttkkkktgcagg CC max mismatch : 2 AI 00000 1 chain 4 sites find / exp.num. .246 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 85 100 .24650 0 2: 2 0 TTTATGTTTATGCACG 2 3357 3372 .24650 0 2: 2 0 TTTATTGAGATACAGA 3 4526 4541 .24650 0 2: 2 0 TTTTGGTAAATGCAGG 4 7044 7059 .24650 0 2: 2 0 TTTATGTTTATGCACG AI 00000 2 chain 1 sites find / exp.num. .246 interval 1 TD 1 1737 1722 .24650 0 2: 2 0 TTTTTTTTAATGTAGA NM **** 138(40b).Conservative blocks in selfsplising introns 1 group box 2: SQ aagatatagtcc CC max mismatch : 2 AI 00000 1 chain 1 sites find / exp.num. .279 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 3539 3550 .27941 0 2: 2 0 AATATATATTCC NM **** 139(41b).Consensus sequence found in the same location in intervening SQ aaaatctt CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .113 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 5610 5617 .11342 0 0: 0 0 AAAATCTT AI 00000 2 chain 1 sites find / exp.num. .113 interval 1 TD 1 1277 1270 .11342 0 0: 0 0 AAAATCTT NM **** 19(5). SECOND MOTIF OF Ad5 E1a SQ zgcgxaa CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. 1.815 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 3210 3216 1.81494 0 0: 0 0 GGCGTAA AI 00000 2 chain 1 sites find / exp.num. 1.815 interval 4 TD 1 4751 4745 1.81494 0 0: 0 0 GGCGAAA NM **** 20(7). DECAMER FROM IMMUNOGLOBULIN GENES SQ AtGCAAAtna AI 00000 2 chain 2 sites find / exp.num. .283 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 3921 3912 .28347 0 1: 1 0 ATGCAAATAT 2 6906 6897 .02835 0 0: 0 0 ATGCAAATTA NM **** 21(12). Mol.Cel.Biol. v62 n8 p1925 E2-PROTEINE OF PAPILLOMPAVIRUS SQ acc-ggt CC distance between two blocks of site: min = 6 max = 6 CC max mismatch in 1-st block: 0, in 2-nd block: 0 AI 00000 1 chain 1 sites find / exp.num. 1.814 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 519 530 1.81372 6 0: 0 0 ACCaaagctGGT AI 00000 2 chain 1 sites find / exp.num. 1.814 interval 4 TD 1 530 519 1.81372 6 0: 0 0 ACCagctttGGT NM **** 23(19). EMBO J. v4 n10 p2669 H21.3.9 HSV-1/Herpesvirus samuiri SQ taatgarattc CC max mismatch : 1 AI 00000 1 chain 2 sites find / exp.num. .113 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 847 857 .11337 0 1: 1 0 TAATGAAGTTC 2 5516 5526 .11337 0 1: 1 0 TAATGGAATTC NM **** 25(25). LVa MOTIF MoMuLV ENHANCER (Mol Cell Biol v7 n3 p1101) SQ gaacag CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. 1.815 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 3100 3105 1.81519 0 0: 0 0 GAACAG 2 6145 6150 1.81519 0 0: 0 0 GAACAG NM **** 26(27). LVc MOTIF MoMuLV ENHANCER (Mol Cell Biol v7 n3 p1101) SQ cctgc CC max mismatch : 0 AI 00000 1 chain 4 sites find / exp.num. 7.262 interval 12 TH num begin end exp.num. dist. mismatch site sequence TD 1 912 916 7.26172 0 0: 0 0 CCTGC 2 2297 2301 7.26172 0 0: 0 0 CCTGC 3 4267 4271 7.26172 0 0: 0 0 CCTGC 4 5326 5330 7.26172 0 0: 0 0 CCTGC AI 00000 2 chain 5 sites find / exp.num. 7.262 interval 12 TD 1 1224 1220 7.26172 0 0: 0 0 CCTGC 2 2732 2728 7.26172 0 0: 0 0 CCTGC 3 4541 4537 7.26172 0 0: 0 0 CCTGC 4 5335 5331 7.26172 0 0: 0 0 CCTGC 5 5565 5561 7.26172 0 0: 0 0 CCTGC NM **** 28(34). INTERFERONE BETA ENHANCER (J.Mol Biol v204 n2 p221) SQ aaxanngaaaggr CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .213 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1946 1958 .21252 0 1: 1 0 AAAATAGAAAGAA NM **** 32(52).Conservative elements of Ig enchanser (E1,E2,E3,E4,OCTA) SQ agcagctggc CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .220 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 2262 2271 .21969 0 1: 1 0 AGCAGCTGCC NM **** 33(57).Conservative elements of Ig enchanser (B,E1,E2,E3) SQ gccatctggc CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .220 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 4373 4382 .21969 0 1: 1 0 GCCATTTGGC NM **** 35(63).enhancer core SV40 SQ tGTGgxxx AI 00000 2 chain 1 sites find / exp.num. .907 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 1780 1773 .90735 0 0: 0 0 TGTGGTAT NM **** 155(21). TC ELEMENT SV40 SQ tccccag AI 00000 2 chain 1 sites find / exp.num. .454 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 959 953 .45374 0 0: 0 0 TCCCCAG NM **** 163(32). LYSOZYME SILENCER 3 (EMBO J v6 n8 p2298) SQ ancaaTgGct CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .028 interval 0 TH num begin end exp.num. dist. mismatch site sequence TD 1 4344 4353 .02835 0 0: 0 0 AGCAATGGCT NM **** 177(51).Conservative elements of Ig enchanser(E1,E2,E3,E4,OCTA) SQ tcaagatggc CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .220 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 5590 5599 .21969 0 1: 1 0 TCAAAATGGC NM **** 180(55).Conservative elements of Ig enchanser (E1,E2,E3,E4,OCTA) SQ atttgcat CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. .113 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 3914 3921 .11342 0 0: 0 0 ATTTGCAT 2 6899 6906 .11342 0 0: 0 0 ATTTGCAT NM **** 37(15). SP1 SQ gggcggr CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. .907 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 112 118 .90747 0 0: 0 0 GGGCGGA 2 7071 7077 .90747 0 0: 0 0 GGGCGGA NM **** 38(18). AP4 FACTOR Nature v332 1988 p557 SQ yCAGCtgygG AI 00000 2 chain 3 sites find / exp.num. .454 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 273 264 .45355 0 1: 1 0 CCAGCAGCGG 2 529 520 .45355 0 1: 1 0 CCAGCTTTGG 3 7232 7223 .45355 0 1: 1 0 CCAGCAGCGG NM **** 39(26). NFY SQ ccaat CC max mismatch : 0 AI 00000 1 chain 16 sites find / exp.num. 7.262 interval 12 TH num begin end exp.num. dist. mismatch site sequence TD 1 1186 1190 7.26172 0 0: 0 0 CCAAT 2 1441 1445 7.26172 0 0: 0 0 CCAAT 3 1528 1532 7.26172 0 0: 0 0 CCAAT 4 2834 2838 7.26172 0 0: 0 0 CCAAT 5 2855 2859 7.26172 0 0: 0 0 CCAAT 6 3080 3084 7.26172 0 0: 0 0 CCAAT 7 3298 3302 7.26172 0 0: 0 0 CCAAT 8 3423 3427 7.26172 0 0: 0 0 CCAAT 9 3537 3541 7.26172 0 0: 0 0 CCAAT 10 3746 3750 7.26172 0 0: 0 0 CCAAT 11 5757 5761 7.26172 0 0: 0 0 CCAAT 12 5907 5911 7.26172 0 0: 0 0 CCAAT 13 6048 6052 7.26172 0 0: 0 0 CCAAT 14 6117 6121 7.26172 0 0: 0 0 CCAAT 15 6353 6357 7.26172 0 0: 0 0 CCAAT 16 6447 6451 7.26172 0 0: 0 0 CCAAT AI 00000 2 chain 8 sites find / exp.num. 7.262 interval 12 TD 1 467 463 7.26172 0 0: 0 0 CCAAT 2 2365 2361 7.26172 0 0: 0 0 CCAAT 3 3506 3502 7.26172 0 0: 0 0 CCAAT 4 5051 5047 7.26172 0 0: 0 0 CCAAT 5 5349 5345 7.26172 0 0: 0 0 CCAAT 6 5968 5964 7.26172 0 0: 0 0 CCAAT 7 6311 6307 7.26172 0 0: 0 0 CCAAT 8 7426 7422 7.26172 0 0: 0 0 CCAAT NM **** 40(2). CRF FACTOR(CCAAT-BOX BINDING FACTOR) SQ tnnnCCatnnC CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. 1.814 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 2245 2255 1.81396 0 0: 0 0 TTAACCATGGC AI 00000 2 chain 2 sites find / exp.num. 1.814 interval 4 TD 1 3443 3433 1.81396 0 0: 0 0 TATTCCATCAC 2 4355 4345 1.81396 0 0: 0 0 TGAGCCATTGC NM **** 187(2.) CRF FACTOR(CCAAT-BOX BINDING FACTOR) SQ tnnnCCatnnC CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. 1.814 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 2245 2255 1.81396 0 0: 0 0 TTAACCATGGC AI 00000 2 chain 2 sites find / exp.num. 1.814 interval 4 TD 1 3443 3433 1.81396 0 0: 0 0 TATTCCATCAC 2 4355 4345 1.81396 0 0: 0 0 TGAGCCATTGC NM **** 191(6). E4F1 PROTEIN OF ADENOVIRUS SQ aCGTMAc AI 00000 2 chain 1 sites find / exp.num. .907 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 6938 6932 .90747 0 0: 0 0 ACGTAAC NM **** 192(7). LARGE T PROTEIN OF PAPILLOMA VIRUS SQ xgrggc CC max mismatch : 0 AI 00000 1 chain 5 sites find / exp.num. 7.261 interval 12 TH num begin end exp.num. dist. mismatch site sequence TD 1 2667 2672 7.26074 0 0: 0 0 AGAGGC 2 2878 2883 7.26074 0 0: 0 0 AGAGGC 3 2902 2907 7.26074 0 0: 0 0 AGAGGC 4 3016 3021 7.26074 0 0: 0 0 AGAGGC 5 3037 3042 7.26074 0 0: 0 0 AGAGGC NM **** 198(17). SITE 3 J vir.v62 n1 p64 SQ cCCCAGGCc AI 00000 2 chain 1 sites find / exp.num. .198 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 958 950 .19846 0 1: 1 0 CCCCAGGCA NM **** 201(21). Binding site for the human transcription factor Sp1 SQ gggcgg CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. 1.815 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 112 117 1.81519 0 0: 0 0 GGGCGG 2 7071 7076 1.81519 0 0: 0 0 GGGCGG NM **** 203(23).Consensus sequence for cAMP receptor protein (CRP or CAP) SQ aantgtganntnnnnca CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .219 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 4647 4663 .21948 0 1: 1 0 AAATATGATGTCATTCA AI 00000 2 chain 2 sites find / exp.num. .219 interval 1 TD 1 3883 3867 .21948 0 1: 1 0 AATTGTGATTTAAACAA 2 4601 4585 .00708 0 0: 0 0 AAATGTGACTTCATGCA NM **** 204(24).Consensus dc sequence essential for correct transcription of SQ tnatttgcat CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .028 interval 0 TH num begin end exp.num. dist. mismatch site sequence TD 1 6897 6906 .02835 0 0: 0 0 TAATTTGCAT NM **** 210(32).Optimal sequence for initiation of translation by eukaryotik SQ accatgg CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .454 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 2248 2254 .45374 0 0: 0 0 ACCATGG NM **** 41(5). HEAt-SHOSK RESPONSIVE ELEMENT SQ ttcnngaa CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. 1.815 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 6523 6530 1.81470 0 0: 0 0 TTCTTGAA AI 00000 2 chain 1 sites find / exp.num. 1.815 interval 4 TD 1 6530 6523 1.81470 0 0: 0 0 TTCAAGAA NM **** 42(7). heat-shock HSP70 SQ ctcgaatgTTcgcgaaa AI 00000 2 chain 1 sites find / exp.num. .369 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 1271 1255 .36886 0 5: 5 0 TTTCAATGTTCGCAAGA NM **** 48(33).Consensus sequence of the recognition sites for the glucocorti SQ tgttct CC max mismatch : 0 AI 00000 1 chain 3 sites find / exp.num. 1.815 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 455 460 1.81519 0 0: 0 0 TGTTCT 2 1480 1485 1.81519 0 0: 0 0 TGTTCT 3 7414 7419 1.81519 0 0: 0 0 TGTTCT AI 00000 2 chain 9 sites find / exp.num. 1.815 interval 4 TD 1 31 26 1.81519 0 0: 0 0 TGTTCT 2 2645 2640 1.81519 0 0: 0 0 TGTTCT 3 3061 3056 1.81519 0 0: 0 0 TGTTCT 4 3104 3099 1.81519 0 0: 0 0 TGTTCT 5 5029 5024 1.81519 0 0: 0 0 TGTTCT 6 5344 5339 1.81519 0 0: 0 0 TGTTCT 7 5935 5930 1.81519 0 0: 0 0 TGTTCT 8 6404 6399 1.81519 0 0: 0 0 TGTTCT 9 6990 6985 1.81519 0 0: 0 0 TGTTCT NM **** 53(34).Consensus of putative activator sequence of immediate early SQ taatgarat CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .057 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1920 1928 .05670 0 0: 0 0 TAATGAAAT NM **** 233(2). MUSCUL-SPECIFIC FACTOR SQ axxtatncat AI 00000 2 chain 1 sites find / exp.num. .113 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1758 1749 .11339 0 0: 0 0 ATTTATTCAT NM **** 235(4). CCCAC-BOX BINDING FACTOR SQ cccac CC max mismatch : 0 AI 00000 1 chain 7 sites find / exp.num. 7.262 interval 12 TH num begin end exp.num. dist. mismatch site sequence TD 1 132 136 7.26172 0 0: 0 0 CCCAC 2 684 688 7.26172 0 0: 0 0 CCCAC 3 839 843 7.26172 0 0: 0 0 CCCAC 4 945 949 7.26172 0 0: 0 0 CCCAC 5 2076 2080 7.26172 0 0: 0 0 CCCAC 6 3389 3393 7.26172 0 0: 0 0 CCCAC 7 7091 7095 7.26172 0 0: 0 0 CCCAC NM **** 253(22).cycle histone MCB 85 5 2 380 389 SQ GAYTTC CC max mismatch : 0 AI 00000 1 chain 3 sites find / exp.num. 3.630 interval 7 TH num begin end exp.num. dist. mismatch site sequence TD 1 3453 3458 3.63037 0 0: 0 0 GATTTC 2 4878 4883 3.63037 0 0: 0 0 GACTTC 3 5305 5310 3.63037 0 0: 0 0 GATTTC AI 00000 2 chain 8 sites find / exp.num. 3.630 interval 7 TD 1 912 907 3.63037 0 0: 0 0 GACTTC 2 1466 1461 3.63037 0 0: 0 0 GACTTC 3 1929 1924 3.63037 0 0: 0 0 GATTTC 4 2295 2290 3.63037 0 0: 0 0 GACTTC 5 4014 4009 3.63037 0 0: 0 0 GACTTC 6 4595 4590 3.63037 0 0: 0 0 GACTTC 7 5402 5397 3.63037 0 0: 0 0 GACTTC 8 6255 6250 3.63037 0 0: 0 0 GACTTC NM **** 254(23). cycle cell 86 45 4 537 544 trt1 SQ GCGAAA AI 00000 2 chain 1 sites find / exp.num. 1.815 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 4750 4745 1.81519 0 0: 0 0 GCGAAA NM **** 255(24). cycle cell 86 45 4 537 544 yeast histone cdc9 SQ cacgaaaa CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .113 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 3995 4002 .11342 0 0: 0 0 CACGAAAA NM **** 257(26).Regulated element of gene LSP of D.melanogaster SQ EMBO J (1985) V 4 N P 3789 H CC aaaytaaagctggt CC max mismatch : 2 AI 00000 1 chain 1 sites find / exp.num. .043 interval 0 TH num begin end exp.num. dist. mismatch site sequence TD 1 3661 3674 .04327 0 2: 2 0 AAATTCAAACTGGT NM **** 258(27).Regulating element of promotor of contractive(KONTRAKTILNIY) SQ cattcct CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .454 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 4453 4459 .45374 0 0: 0 0 CATTCCT AI 00000 2 chain 1 sites find / exp.num. .454 interval 2 TD 1 1897 1891 .45374 0 0: 0 0 CATTCCT NM **** 263(32).Sequence repeated 5 times in the promoter of the mouse SQ gaaga CC max mismatch : 0 AI 00000 1 chain 20 sites find / exp.num. 7.262 interval 12 TH num begin end exp.num. dist. mismatch site sequence TD 1 396 400 7.26172 0 0: 0 0 GAAGA 2 562 566 7.26172 0 0: 0 0 GAAGA 3 565 569 7.26172 0 0: 0 0 GAAGA 4 991 995 7.26172 0 0: 0 0 GAAGA 5 1618 1622 7.26172 0 0: 0 0 GAAGA 6 2098 2102 7.26172 0 0: 0 0 GAAGA 7 2122 2126 7.26172 0 0: 0 0 GAAGA 8 2143 2147 7.26172 0 0: 0 0 GAAGA 9 2158 2162 7.26172 0 0: 0 0 GAAGA 10 2199 2203 7.26172 0 0: 0 0 GAAGA 11 2257 2261 7.26172 0 0: 0 0 GAAGA 12 2389 2393 7.26172 0 0: 0 0 GAAGA 13 3138 3142 7.26172 0 0: 0 0 GAAGA 14 3141 3145 7.26172 0 0: 0 0 GAAGA 15 3495 3499 7.26172 0 0: 0 0 GAAGA 16 3498 3502 7.26172 0 0: 0 0 GAAGA 17 3610 3614 7.26172 0 0: 0 0 GAAGA 18 4029 4033 7.26172 0 0: 0 0 GAAGA 19 6122 6126 7.26172 0 0: 0 0 GAAGA 20 7355 7359 7.26172 0 0: 0 0 GAAGA AI 00000 2 chain 2 sites find / exp.num. 7.262 interval 12 TD 1 984 980 7.26172 0 0: 0 0 GAAGA 2 2167 2163 7.26172 0 0: 0 0 GAAGA NM **** 264(33)."CCAAT box";one of a number of homology blocks at the 5'-ends SQ grccaatnr CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .454 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 3744 3752 .45361 0 0: 0 0 GACCAATTA AI 00000 2 chain 1 sites find / exp.num. .454 interval 2 TD 1 5970 5962 .45361 0 0: 0 0 GACCAATTG NM **** 266(35).Consensus pd sequense essential for correct transcription of SQ tgcazctgtgnccag AI 00000 2 chain 1 sites find / exp.num. .043 interval 0 TH num begin end exp.num. dist. mismatch site sequence TD 1 3245 3231 .04327 0 2: 2 0 TGCACCTGTATCAAG NM **** 268(37).Consensus sequence of repeated hexanucleotides within the 5'- SQ aarqga CC max mismatch : 0 AI 00000 1 chain 12 sites find / exp.num. 7.261 interval 12 TH num begin end exp.num. dist. mismatch site sequence TD 1 537 542 7.26074 0 0: 0 0 AAAGGA 2 545 550 7.26074 0 0: 0 0 AAAGGA 3 1316 1321 7.26074 0 0: 0 0 AAATGA 4 1353 1358 7.26074 0 0: 0 0 AAAGGA 5 1747 1752 7.26074 0 0: 0 0 AAATGA 6 1821 1826 7.26074 0 0: 0 0 AAATGA 7 2377 2382 7.26074 0 0: 0 0 AAGGGA 8 2807 2812 7.26074 0 0: 0 0 AAGTGA 9 4623 4628 7.26074 0 0: 0 0 AAAGGA 10 5408 5413 7.26074 0 0: 0 0 AAATGA 11 6614 6619 7.26074 0 0: 0 0 AAATGA 12 6948 6953 7.26074 0 0: 0 0 AAAGGA AI 00000 2 chain 4 sites find / exp.num. 7.261 interval 12 TD 1 3406 3401 7.26074 0 0: 0 0 AAATGA 2 4461 4456 7.26074 0 0: 0 0 AAAGGA 3 4580 4575 7.26074 0 0: 0 0 AAATGA 4 6794 6789 7.26074 0 0: 0 0 AAATGA