ID DVGYPSY DE Drosophila virilis mobile elemnt gypsy, complete. NM **** 1.(1) POLIMERASE II SQ tATAaa CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. 1.745 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 3911 3916 1.74536 0 0: 0 0 TATAAA AI 00000 2 chain 5 sites find / exp.num. 1.745 interval 4 TD 1 228 223 1.74536 0 0: 0 0 TATAAA 2 738 733 1.74536 0 0: 0 0 TATAAA 3 3914 3909 1.74536 0 0: 0 0 TATAAA 4 5288 5283 1.74536 0 0: 0 0 TATAAA 5 6971 6966 1.74536 0 0: 0 0 TATAAA NM **** 2.(1.1) Inr (ripl.POLIMERASE II) SQ NTCAQTY CC max mismatch : 0 AI 00000 1 chain 11 sites find / exp.num. 6.980 interval 12 TH num begin end exp.num. dist. mismatch site sequence TD 1 463 469 6.98047 0 0: 0 0 TTCAGTT 2 581 587 6.98047 0 0: 0 0 TTCATTC 3 1027 1033 6.98047 0 0: 0 0 ATCAGTT 4 2281 2287 6.98047 0 0: 0 0 GTCATTC 5 3010 3016 6.98047 0 0: 0 0 TTCATTT 6 3475 3481 6.98047 0 0: 0 0 TTCAGTT 7 4148 4154 6.98047 0 0: 0 0 ATCAGTT 8 5770 5776 6.98047 0 0: 0 0 ATCAGTT 9 5804 5810 6.98047 0 0: 0 0 CTCATTT 10 5996 6002 6.98047 0 0: 0 0 TTCAGTC 11 6633 6639 6.98047 0 0: 0 0 CTCATTC AI 00000 2 chain 5 sites find / exp.num. 6.980 interval 12 TD 1 79 73 6.98047 0 0: 0 0 CTCAGTT 2 956 950 6.98047 0 0: 0 0 TTCAGTT 3 1880 1874 6.98047 0 0: 0 0 CTCAGTT 4 2865 2859 6.98047 0 0: 0 0 TTCAGTT 5 6822 6816 6.98047 0 0: 0 0 CTCAGTT NM **** 4.(9a) n=55;found upstream from the promoter of the pheasant conalbu- SQ ggaaa CC max mismatch : 0 AI 00000 1 chain 13 sites find / exp.num. 6.982 interval 12 TH num begin end exp.num. dist. mismatch site sequence TD 1 905 909 6.98242 0 0: 0 0 GGAAA 2 2856 2860 6.98242 0 0: 0 0 GGAAA 3 2927 2931 6.98242 0 0: 0 0 GGAAA 4 3122 3126 6.98242 0 0: 0 0 GGAAA 5 3265 3269 6.98242 0 0: 0 0 GGAAA 6 3466 3470 6.98242 0 0: 0 0 GGAAA 7 3793 3797 6.98242 0 0: 0 0 GGAAA 8 3873 3877 6.98242 0 0: 0 0 GGAAA 9 4387 4391 6.98242 0 0: 0 0 GGAAA 10 4519 4523 6.98242 0 0: 0 0 GGAAA 11 5478 5482 6.98242 0 0: 0 0 GGAAA 12 6229 6233 6.98242 0 0: 0 0 GGAAA 13 6659 6663 6.98242 0 0: 0 0 GGAAA AI 00000 2 chain 11 sites find / exp.num. 6.982 interval 12 TD 1 773 769 6.98242 0 0: 0 0 GGAAA 2 2348 2344 6.98242 0 0: 0 0 GGAAA 3 3658 3654 6.98242 0 0: 0 0 GGAAA 4 4101 4097 6.98242 0 0: 0 0 GGAAA 5 4253 4249 6.98242 0 0: 0 0 GGAAA 6 4277 4273 6.98242 0 0: 0 0 GGAAA 7 4425 4421 6.98242 0 0: 0 0 GGAAA 8 4698 4694 6.98242 0 0: 0 0 GGAAA 9 5240 5236 6.98242 0 0: 0 0 GGAAA 10 5451 5447 6.98242 0 0: 0 0 GGAAA 11 5501 5497 6.98242 0 0: 0 0 GGAAA NM **** 6.(5) POLY A SINGLE BLOCK SQ AATAAA CC max mismatch : 0 AI 00000 1 chain 8 sites find / exp.num. 1.745 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 256 261 1.74536 0 0: 0 0 AATAAA 2 423 428 1.74536 0 0: 0 0 AATAAA 3 649 654 1.74536 0 0: 0 0 AATAAA 4 738 743 1.74536 0 0: 0 0 AATAAA 5 5712 5717 1.74536 0 0: 0 0 AATAAA 6 5736 5741 1.74536 0 0: 0 0 AATAAA 7 5761 5766 1.74536 0 0: 0 0 AATAAA 8 6999 7004 1.74536 0 0: 0 0 AATAAA AI 00000 2 chain 3 sites find / exp.num. 1.745 interval 4 TD 1 3418 3413 1.74536 0 0: 0 0 AATAAA 2 4718 4713 1.74536 0 0: 0 0 AATAAA 3 5813 5808 1.74536 0 0: 0 0 AATAAA NM **** 8.(14b) One of two related variants of a presumed transcription termi SQ tatgt CC max mismatch : 0 AI 00000 1 chain 3 sites find / exp.num. 6.982 interval 12 TH num begin end exp.num. dist. mismatch site sequence TD 1 1197 1201 6.98242 0 0: 0 0 TATGT 2 2234 2238 6.98242 0 0: 0 0 TATGT 3 3140 3144 6.98242 0 0: 0 0 TATGT AI 00000 2 chain 14 sites find / exp.num. 6.982 interval 12 TD 1 246 242 6.98242 0 0: 0 0 TATGT 2 292 288 6.98242 0 0: 0 0 TATGT 3 326 322 6.98242 0 0: 0 0 TATGT 4 396 392 6.98242 0 0: 0 0 TATGT 5 1105 1101 6.98242 0 0: 0 0 TATGT 6 1384 1380 6.98242 0 0: 0 0 TATGT 7 2354 2350 6.98242 0 0: 0 0 TATGT 8 3119 3115 6.98242 0 0: 0 0 TATGT 9 3457 3453 6.98242 0 0: 0 0 TATGT 10 6021 6017 6.98242 0 0: 0 0 TATGT 11 6989 6985 6.98242 0 0: 0 0 TATGT 12 7035 7031 6.98242 0 0: 0 0 TATGT 13 7069 7065 6.98242 0 0: 0 0 TATGT 14 7139 7135 6.98242 0 0: 0 0 TATGT NM **** 10.(18) ORI HUM SQ taaatttagt CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .211 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 5858 5867 .21123 0 1: 1 0 AAAATTTAGT NM **** 12.(15) HSV ORI SQ atatatatat CC max mismatch : 1 AI 00000 1 chain 2 sites find / exp.num. .211 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 16 25 .21123 0 1: 1 0 ATAAATATAT 2 6759 6768 .21123 0 1: 1 0 ATAAATATAT AI 00000 2 chain 2 sites find / exp.num. .211 interval 1 TD 1 25 16 .21123 0 1: 1 0 ATATATTTAT 2 6768 6759 .21123 0 1: 1 0 ATATATTTAT NM **** 13.(19) ARS Y XE DM SQ xtttatrtttx AI 00000 2 chain 4 sites find / exp.num. .382 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 21 11 .38153 0 1: 1 0 ATTTATGCTTA 2 3967 3957 .38153 0 1: 1 0 ATTAATGTTTT 3 4399 4389 .38153 0 1: 1 0 TTTAATGTTTT 4 6764 6754 .38153 0 1: 1 0 ATTTATGCTTA NM **** 15.(22) SAR A BOX OF DROSOFILA j mol biol v198 n 4 p677 &cell v46 n4 SQ aataaayaaa CC max mismatch : 1 AI 00000 1 chain 5 sites find / exp.num. .395 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 256 265 .39521 0 1: 1 0 AATAAATATA 2 2713 2722 .39521 0 1: 1 0 CATAAACAAA 3 5732 5741 .39521 0 1: 1 0 AACAAATAAA 4 5736 5745 .39521 0 1: 1 0 AATAAACAGA 5 6999 7008 .39521 0 1: 1 0 AATAAATATA NM **** 16.(23) SAR T BOX OF DROSOFILA cell v46 n4 p521 SQ TtXTxTTXtt AI 00000 2 chain 14 sites find / exp.num. .055 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 525 516 .05451 0 0: 0 0 TTTTTTTTTT 2 526 517 .05451 0 0: 0 0 TTTTTTTTTT 3 527 518 .05451 0 0: 0 0 TTTTTTTTTT 4 528 519 .05451 0 0: 0 0 TTTTTTTTTT 5 529 520 .05451 0 0: 0 0 TTTTTTTTTT 6 530 521 .05451 0 0: 0 0 TTTTTTTTTT 7 531 522 .05451 0 0: 0 0 TTTTTTTTTT 8 532 523 .05451 0 0: 0 0 TTTTTTTTTT 9 533 524 .05451 0 0: 0 0 TTTTTTTTTT 10 534 525 .05451 0 0: 0 0 TTTTTTTTTT 11 535 526 .05451 0 0: 0 0 TTTTTTTTTT 12 536 527 .05451 0 0: 0 0 TTTTTTTTTT 13 537 528 .05451 0 0: 0 0 TTTTTTTTTT 14 538 529 .05451 0 0: 0 0 TTTTTTTTTT NM **** 55(3). ANIMAL POLIMERASE II SQ ggycaatct-tataxax AI 00000 2 chain 4 sites find / exp.num. .266 interval 0 TH num begin end exp.num. dist. mismatch site sequence TD 1 766 730 .26610 21 2: 1 1 GGTGAATCTtggggtatgcaatatttattaTAAAAAA 2 766 732 .01478 19 1: 1 0 GGTGAATCTtggggtatgcaatatttatTATAAAA 3 3984 3908 .01478 61 1: 1 0 GGCCCATCTtcgagagcattaatgttttgccttgaaagggcatccgccaccagattctctttgcccggttTATAAAA 4 3984 3910 .26610 59 2: 1 1 GGCCCATCTtcgagagcattaatgttttgccttgaaagggcatccgccaccagattctctttgcccggTTTATAA NM **** 56(6). POLYMERASE TWO BLOCKS III (NAR V12 N19 p7377) SQ rrynnarygg-gxtcrannc CC distance between two blocks of site: min = 31 max = 41 CC max mismatch in 1-st block: 0, in 2-nd block: 1 AI 00000 1 chain 1 sites find / exp.num. .168 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 3170 3225 .16758 37 1: 0 1 AACGAAACGGagcaccttcaacacattaacattgtgttaaaatgtctAATCGACGC NM **** 57(7). POLYMERASE TWO BLOCKS III(variant) jbc v258 n 16 p10208) SQ rgynnrryngg-gxtcrannc CC distance between two blocks of site: min = 31 max = 41 CC max mismatch in 1-st block: 0, in 2-nd block: 1 AI 00000 1 chain 1 sites find / exp.num. .168 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1305 1357 .16756 33 1: 0 1 GGCCCAGCTGGagccttactagtgtctcacaacactgtcctaaaTTTCGATGC NM **** 60(11). INTRON-EXON JUNCTION SQ yyyyynyAGG AI 00000 2 chain 2 sites find / exp.num. 1.744 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 3115 3106 1.74438 0 0: 0 0 TTCCCTCAGG 2 4090 4081 1.74438 0 0: 0 0 TTCCTCTAGG NM **** 61(12). lar+3' SQ YTaAT-yyyyaG AI 00000 2 chain 4 sites find / exp.num. 1.140 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 2140 2097 1.14043 33 0: 0 0 TTAATcgagtcgtcaccaggtgcgtactcgttctcactCTCTAG 2 3198 3165 1.14043 23 0: 0 0 TTAATgtgttgaaggtgctccgtttcgtTTTTAG 3 5251 5225 1.14043 16 0: 0 0 CTAATtgtggaggaaaacttaTTTCAG 4 6025 5981 1.14043 34 0: 0 0 TTAATatgtggataatattctcggactgaaggaccttgaTCTTAG NM **** 62(13). AUTO SPLACING SQ ctgangangnc-gncgaaac AI 00000 2 chain 1 sites find / exp.num. .162 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 4152 4123 .16179 11 3: 2 1 CTGATCAAGTGgcgtgttttgcTGCGAAAC NM **** 64(17). ORI MT !!! SQ trtgytytr AI 00000 2 chain 4 sites find / exp.num. .436 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 292 284 .43616 0 0: 0 0 TATGTTTTA 2 396 388 .43616 0 0: 0 0 TATGTTCTG 3 7035 7027 .43616 0 0: 0 0 TATGTTTTA 4 7139 7131 .43616 0 0: 0 0 TATGTTCTG NM **** 66(25).ARS-fragment of chlamydomonada SQ attaacaat CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. .027 interval 0 TH num begin end exp.num. dist. mismatch site sequence TD 1 51 59 .02726 0 0: 0 0 ATTAACAAT 2 6794 6802 .02726 0 0: 0 0 ATTAACAAT NM **** 67(26).ARS-fragment of chlamydomonada SQ raattttaaat AI 00000 2 chain 2 sites find / exp.num. .109 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 5309 5299 .10901 0 1: 1 0 AAATTTGAAAT 2 5864 5854 .10901 0 1: 1 0 AAATTTTGAAT NM **** 69(28).ARS of human SQ tattyytaaatttagtxt CC max mismatch : 4 AI 00000 1 chain 1 sites find / exp.num. .138 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 5852 5869 .13849 0 4: 4 0 AAATTCAAAATTTAGTAC AI 00000 2 chain 1 sites find / exp.num. .138 interval 1 TD 1 5856 5839 .13849 0 4: 4 0 AATTTCTGAGTTCAGTAT NM **** 71(31).sequence repeated nontandemly several times in the origin of t SQ gcctc CC max mismatch : 0 AI 00000 1 chain 4 sites find / exp.num. 6.982 interval 12 TH num begin end exp.num. dist. mismatch site sequence TD 1 4869 4873 6.98242 0 0: 0 0 GCCTC 2 5346 5350 6.98242 0 0: 0 0 GCCTC 3 5594 5598 6.98242 0 0: 0 0 GCCTC 4 6670 6674 6.98242 0 0: 0 0 GCCTC AI 00000 2 chain 11 sites find / exp.num. 6.982 interval 12 TD 1 181 177 6.98242 0 0: 0 0 GCCTC 2 1087 1083 6.98242 0 0: 0 0 GCCTC 3 1212 1208 6.98242 0 0: 0 0 GCCTC 4 1669 1665 6.98242 0 0: 0 0 GCCTC 5 1882 1878 6.98242 0 0: 0 0 GCCTC 6 2086 2082 6.98242 0 0: 0 0 GCCTC 7 4731 4727 6.98242 0 0: 0 0 GCCTC 8 5126 5122 6.98242 0 0: 0 0 GCCTC 9 5434 5430 6.98242 0 0: 0 0 GCCTC 10 5693 5689 6.98242 0 0: 0 0 GCCTC 11 6924 6920 6.98242 0 0: 0 0 GCCTC NM **** 72(33).consensus sequence of the cores of autonomously replicating SQ xaaayataaax CC max mismatch : 1 AI 00000 1 chain 4 sites find / exp.num. .382 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 11 21 .38153 0 1: 1 0 TAAGCATAAAT 2 3957 3967 .38153 0 1: 1 0 AAAACATTAAT 3 4389 4399 .38153 0 1: 1 0 AAAACATTAAA 4 6754 6764 .38153 0 1: 1 0 TAAGCATAAAT NM **** 76(4a).sequence common for transcription initiation sites of rRNA gen SQ trctgacacgctgtcctyt AI 00000 2 chain 2 sites find / exp.num. .224 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 2025 2007 .22436 0 5: 5 0 TGTTAACGCGTTGTCGTCT 2 6363 6345 .22436 0 5: 5 0 TCCTGAGACGGTTACCTCT NM **** 78(6a).Consensus sequence of promotor genes for RNA polymerase 2 of a SQ ggycaatct-xtataxa AI 00000 2 chain 1 sites find / exp.num. .104 interval 0 TH num begin end exp.num. dist. mismatch site sequence TD 1 3984 3909 .00893 60 1: 1 0 GGCCCATCTtcgagagcattaatgttttgccttgaaagggcatccgccaccagattctctttgcccggtTTATAAA NM **** 81(12a).consensus sequence near the 3'-ends of the adenovirus 2 genes SQ gggttttg AI 00000 2 chain 1 sites find / exp.num. .109 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 4184 4177 .10905 0 0: 0 0 GGGTTTTG NM **** 82(13a).consensus sequence near the 3'-ends of the adenovirus 2 genes SQ ttgggg CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. 1.745 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 3386 3391 1.74536 0 0: 0 0 TTGGGG AI 00000 2 chain 3 sites find / exp.num. 1.745 interval 4 TD 1 758 753 1.74536 0 0: 0 0 TTGGGG 2 3324 3319 1.74536 0 0: 0 0 TTGGGG 3 5959 5954 1.74536 0 0: 0 0 TTGGGG NM **** 83(14a).consensus sequence near the 3'-ends of the adenovirus 2 genes SQ ttttgggg AI 00000 2 chain 1 sites find / exp.num. .109 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 3326 3319 .10905 0 0: 0 0 TTTTGGGG NM **** 85(16a).one of two suggested consensus sequences for RNA-polymerase I SQ ggttgg CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. 1.745 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 2181 2186 1.74536 0 0: 0 0 GGTTGG 2 2838 2843 1.74536 0 0: 0 0 GGTTGG AI 00000 2 chain 3 sites find / exp.num. 1.745 interval 4 TD 1 422 417 1.74536 0 0: 0 0 GGTTGG 2 837 832 1.74536 0 0: 0 0 GGTTGG 3 4635 4630 1.74536 0 0: 0 0 GGTTGG NM **** 97(28a).consensus sequence of human mitochondrial promoters SQ canaccccaaagaya CC max mismatch : 3 AI 00000 1 chain 1 sites find / exp.num. .490 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 1624 1638 .48973 0 3: 3 0 CACAACCAAAAGATC NM **** 98(29a).sequence within the promoter of the human mitochondrial gene SQ cccacacccctgtc CC max mismatch : 3 AI 00000 1 chain 1 sites find / exp.num. .284 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1330 1343 .28438 0 3: 3 0 CTCACAACACTGTC NM **** 99(31a).putative regulatory sequence(promoter element) present in SQ gggnggrr CC max mismatch : 0 AI 00000 1 chain 4 sites find / exp.num. 1.745 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 898 905 1.74487 0 0: 0 0 GGGAGGGG 2 6557 6564 1.74487 0 0: 0 0 GGGAGGAG 3 6734 6741 1.74487 0 0: 0 0 GGGGGGGA 4 6735 6742 1.74487 0 0: 0 0 GGGGGGAG NM **** 100(32a).consensus of the TATA-box of Dictyostelium promoters SQ tataaaxa AI 00000 2 chain 1 sites find / exp.num. .218 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 738 731 .21811 0 0: 0 0 TATAAAAA NM **** 101(33a)."Goldberg-Hogness box";consensus sequence belonging to eukar SQ tataxax AI 00000 2 chain 5 sites find / exp.num. 1.745 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 228 222 1.74512 0 0: 0 0 TATAAAA 2 738 732 1.74512 0 0: 0 0 TATAAAA 3 3914 3908 1.74512 0 0: 0 0 TATAAAA 4 5288 5282 1.74512 0 0: 0 0 TATAAAA 5 6971 6965 1.74512 0 0: 0 0 TATAAAA NM **** 103(36a).consensus sequence of a tentative transcription initiation SQ aagtta CC max mismatch : 0 AI 00000 1 chain 4 sites find / exp.num. 1.745 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 3327 3332 1.74536 0 0: 0 0 AAGTTA 2 4534 4539 1.74536 0 0: 0 0 AAGTTA 3 4874 4879 1.74536 0 0: 0 0 AAGTTA 4 5135 5140 1.74536 0 0: 0 0 AAGTTA AI 00000 2 chain 1 sites find / exp.num. 1.745 interval 4 TD 1 6379 6374 1.74536 0 0: 0 0 AAGTTA NM **** 104(37a).sequence frequently found in the promoter region of histone SQ ccgca CC max mismatch : 0 AI 00000 1 chain 3 sites find / exp.num. 6.982 interval 12 TH num begin end exp.num. dist. mismatch site sequence TD 1 1089 1093 6.98242 0 0: 0 0 CCGCA 2 4698 4702 6.98242 0 0: 0 0 CCGCA 3 5778 5782 6.98242 0 0: 0 0 CCGCA AI 00000 2 chain 4 sites find / exp.num. 6.982 interval 12 TD 1 2990 2986 6.98242 0 0: 0 0 CCGCA 2 3553 3549 6.98242 0 0: 0 0 CCGCA 3 4799 4795 6.98242 0 0: 0 0 CCGCA 4 6574 6570 6.98242 0 0: 0 0 CCGCA NM **** 105(40a).sequence frequently found in the promoter region of histone SQ gtcccccc CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .109 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 2540 2547 .10905 0 0: 0 0 GTCCCCCC NM **** 108(1b).Binding-site for factor NFI, which stimulates replication SQ tggmn-gccaa CC distance between two blocks of site: min = 3 max = 6 CC max mismatch in 1-st block: 0, in 2-nd block: 0 AI 00000 1 chain 1 sites find / exp.num. .218 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 4431 4446 .21791 6 0: 0 0 TGGCCagtctgGCCAA AI 00000 2 chain 1 sites find / exp.num. .218 interval 1 TD 1 4254 4241 .21791 4 0: 0 0 TGGAAacttGCCAA NM **** 113(6b).Sequence located at the 3'-ends of yeast genes,presumably SQ tttttata CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .109 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 731 738 .10905 0 0: 0 0 TTTTTATA NM **** 115(8b).Termination of transcription of RNA polymerase I of human SQ gggtcgaccr CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .395 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 2306 2315 .39521 0 1: 1 0 GGGTCTACCG NM **** 125(23b).Consensus mRNA cap site in Drosophila Cell 29,1027 (Gnomic) SQ yatcxgq CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. 3.490 interval 7 TH num begin end exp.num. dist. mismatch site sequence TD 1 998 1004 3.49023 0 0: 0 0 CATCAGG 2 5769 5775 3.49023 0 0: 0 0 TATCAGT AI 00000 2 chain 5 sites find / exp.num. 3.490 interval 7 TD 1 1457 1451 3.49023 0 0: 0 0 CATCAGG 2 3626 3620 3.49023 0 0: 0 0 CATCAGT 3 5709 5703 3.49023 0 0: 0 0 TATCTGT 4 6337 6331 3.49023 0 0: 0 0 CATCTGT 5 6375 6369 3.49023 0 0: 0 0 TATCAGG NM **** 126(24b)."Cap box";one of a number of homology blocks at the 5'-ends SQ ycattcr CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. 1.745 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 3053 3059 1.74512 0 0: 0 0 CCATTCG 2 3336 3342 1.74512 0 0: 0 0 CCATTCA NM **** 129(27b).Consensus of a presumed transcription processing signal of m SQ ataatattctt AI 00000 2 chain 1 sites find / exp.num. .058 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 6014 6004 .05791 0 1: 1 0 ATAATATTCTC NM **** 131(29b).Site of splising of vertebrates 3'-end: PNAS (1984) V 81 N 2 SQ yyyyyncagg AI 00000 2 chain 1 sites find / exp.num. .872 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 3115 3106 .87219 0 0: 0 0 TTCCCTCAGG NM **** 132(33b).Brunch : PNAS (1984) V 81 N 23 P 7417 H SQ uacuaac AI 00000 2 chain 2 sites find / exp.num. .436 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 3485 3479 .43628 0 0: 0 0 TACTAAC 2 5464 5458 .43628 0 0: 0 0 TACTAAC NM **** 134(35b).Site of splising of plants 3'-end: NAR (1986) V 14 N 24 P 95 SQ tttkttkkkktgcagg AI 00000 2 chain 1 sites find / exp.num. .237 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1635 1620 .23700 0 2: 2 0 CTTTTGGTTGTGCAGG NM **** 135(37b).Conservative blocks in selfsplising introns 1 group A: SQ augcuggaaa AI 00000 2 chain 1 sites find / exp.num. .211 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 2353 2344 .21123 0 1: 1 0 ATGTTGGAAA NM **** 137(39b).Conservative blocks in selfsplising introns 1 group box 9L: SQ tcagagactaca CC max mismatch : 2 AI 00000 1 chain 2 sites find / exp.num. .269 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1555 1566 .26865 0 2: 2 0 TCAGAGACGACG 2 2003 2014 .26865 0 2: 2 0 TCAAAGACGACA NM **** 139(41b).Consensus sequence found in the same location in intervening SQ aaaatctt CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .109 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 4302 4309 .10905 0 0: 0 0 AAAATCTT NM **** 19(5). SECOND MOTIF OF Ad5 E1a SQ zgcgxaa CC max mismatch : 0 AI 00000 1 chain 4 sites find / exp.num. 1.745 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 1440 1446 1.74512 0 0: 0 0 GGCGAAA 2 2999 3005 1.74512 0 0: 0 0 CGCGAAA 3 4544 4550 1.74512 0 0: 0 0 GGCGAAA 4 6199 6205 1.74512 0 0: 0 0 CGCGAAA NM **** 20(7). DECAMER FROM IMMUNOGLOBULIN GENES SQ AtGCAAAtna AI 00000 2 chain 3 sites find / exp.num. .273 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 205 196 .27256 0 1: 1 0 AAGCAAATTA 2 4788 4779 .27256 0 1: 1 0 ATGCAAATGC 3 6948 6939 .27256 0 1: 1 0 AAGCAAATTA NM **** 21(12). Mol.Cel.Biol. v62 n8 p1925 E2-PROTEINE OF PAPILLOMPAVIRUS SQ acc-ggt CC distance between two blocks of site: min = 6 max = 6 CC max mismatch in 1-st block: 0, in 2-nd block: 0 AI 00000 1 chain 1 sites find / exp.num. 1.744 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 4966 4977 1.74390 6 0: 0 0 ACCaattgaGGT AI 00000 2 chain 1 sites find / exp.num. 1.744 interval 4 TD 1 4977 4966 1.74390 6 0: 0 0 ACCtcaattGGT NM **** 22(18). PNAS v84 n5 p1272 H21.3.5 PROTEIN BINDING SITE IN c-FOS ENHAN SQ cccgtc AI 00000 2 chain 1 sites find / exp.num. 1.745 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 5397 5392 1.74536 0 0: 0 0 CCCGTC NM **** 23(19). EMBO J. v4 n10 p2669 H21.3.9 HSV-1/Herpesvirus samuiri SQ taatgarattc CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .109 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 3517 3527 .10901 0 1: 1 0 TAATGAAGTTC AI 00000 2 chain 1 sites find / exp.num. .109 interval 1 TD 1 990 980 .10901 0 1: 1 0 CAATGAGATTC NM **** 24(23). E MOTIF Ig ENHANCER SQ cAgnTGGc AI 00000 2 chain 2 sites find / exp.num. .436 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 6245 6238 .43622 0 0: 0 0 CAGTTGGC 2 6267 6260 .43622 0 0: 0 0 CAGGTGGC NM **** 25(25). LVa MOTIF MoMuLV ENHANCER (Mol Cell Biol v7 n3 p1101) SQ gaacag CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. 1.745 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 2652 2657 1.74536 0 0: 0 0 GAACAG 2 6329 6334 1.74536 0 0: 0 0 GAACAG NM **** 26(27). LVc MOTIF MoMuLV ENHANCER (Mol Cell Biol v7 n3 p1101) SQ cctgc CC max mismatch : 0 AI 00000 1 chain 7 sites find / exp.num. 6.982 interval 12 TH num begin end exp.num. dist. mismatch site sequence TD 1 793 797 6.98242 0 0: 0 0 CCTGC 2 933 937 6.98242 0 0: 0 0 CCTGC 3 1620 1624 6.98242 0 0: 0 0 CCTGC 4 3061 3065 6.98242 0 0: 0 0 CCTGC 5 4277 4281 6.98242 0 0: 0 0 CCTGC 6 6420 6424 6.98242 0 0: 0 0 CCTGC 7 6510 6514 6.98242 0 0: 0 0 CCTGC AI 00000 2 chain 2 sites find / exp.num. 6.982 interval 12 TD 1 1080 1076 6.98242 0 0: 0 0 CCTGC 2 1440 1436 6.98242 0 0: 0 0 CCTGC NM **** 28(34). INTERFERONE BETA ENHANCER (J.Mol Biol v204 n2 p221) SQ aaxanngaaaggr CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .204 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 3167 3179 .20433 0 1: 1 0 AAAAACGAAACGG NM **** 33(57).Conservative elements of Ig enchanser (B,E1,E2,E3) SQ gccatctggc CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .211 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 996 1005 .21123 0 1: 1 0 GCCATCAGGC NM **** 34(60).potential core sequence of enhancers of various human viruses SQ cxxxccac CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. .872 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 5496 5503 .87244 0 0: 0 0 CTTTCCAC 2 6501 6508 .87244 0 0: 0 0 CATACCAC NM **** 35(63).enhancer core SV40 SQ tGTGgxxx AI 00000 2 chain 2 sites find / exp.num. .872 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 5504 5497 .87244 0 0: 0 0 TGTGGAAA 2 6019 6012 .87244 0 0: 0 0 TGTGGATA NM **** 145(8). SV40 ENHANCER CORE SQ tgtggxxxg AI 00000 2 chain 1 sites find / exp.num. .218 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 5504 5496 .21808 0 0: 0 0 TGTGGAAAG NM **** 154(20). Mol.Cel.Biol. v5 n4 p649 H21.3.3 SQ ccaccca AI 00000 2 chain 1 sites find / exp.num. .436 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 2795 2789 .43628 0 0: 0 0 CCACCCA NM **** 155(21). TC ELEMENT SV40 SQ tccccag CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .436 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 1844 1850 .43628 0 0: 0 0 TCCCCAG NM **** 156(22). Sph ELEMENT SV40 SQ raagyatgc AI 00000 2 chain 3 sites find / exp.num. .109 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 608 600 .10904 0 0: 0 0 AAAGTATGC 2 631 623 .10904 0 0: 0 0 AAAGTATGC 3 692 684 .10904 0 0: 0 0 AAAGTATGC NM **** 158(26). LVb MOTIF MoMuLV ENHANCER (Mol Cell Biol v7 n3 p1101) SQ caggata AI 00000 2 chain 1 sites find / exp.num. .436 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 3109 3103 .43628 0 0: 0 0 CAGGATA NM **** 161(30). LYSOZYME SILENCER 1 (EMBO J v6 n8 p2298) SQ anCCTCCTCy AI 00000 2 chain 1 sites find / exp.num. .436 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 6567 6558 .43610 0 1: 1 0 TACCTCCTCC NM **** 180(55).Conservative elements of Ig enchanser (E1,E2,E3,E4,OCTA) SQ atttgcat CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .109 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 4781 4788 .10905 0 0: 0 0 ATTTGCAT NM **** 182(58).Conservative elements of Ig enchanser (B,E1,E2,E3) SQ ggcaggtggc AI 00000 2 chain 1 sites find / exp.num. .211 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 6247 6238 .21123 0 1: 1 0 GGCAGTTGGC NM **** 36(10). NF1-FACtOR SQ tgg-gccaa AI 00000 2 chain 1 sites find / exp.num. .218 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 4254 4241 .21791 6 0: 0 0 TGGaaacttGCCAA NM **** 38(18). AP4 FACTOR Nature v332 1988 p557 SQ yCAGCtgygG CC max mismatch : 1 AI 00000 1 chain 2 sites find / exp.num. .327 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 103 112 .32707 0 1: 1 0 CCAGCAGCGG 2 6846 6855 .32707 0 1: 1 0 CCAGCAGCGG NM **** 39(26). NFY SQ ccaat CC max mismatch : 0 AI 00000 1 chain 7 sites find / exp.num. 6.982 interval 12 TH num begin end exp.num. dist. mismatch site sequence TD 1 421 425 6.98242 0 0: 0 0 CCAAT 2 843 847 6.98242 0 0: 0 0 CCAAT 3 3671 3675 6.98242 0 0: 0 0 CCAAT 4 4285 4289 6.98242 0 0: 0 0 CCAAT 5 4425 4429 6.98242 0 0: 0 0 CCAAT 6 4967 4971 6.98242 0 0: 0 0 CCAAT 7 5956 5960 6.98242 0 0: 0 0 CCAAT AI 00000 2 chain 3 sites find / exp.num. 6.982 interval 12 TD 1 3645 3641 6.98242 0 0: 0 0 CCAAT 2 6605 6601 6.98242 0 0: 0 0 CCAAT 3 6632 6628 6.98242 0 0: 0 0 CCAAT NM **** 40(2). CRF FACTOR(CCAAT-BOX BINDING FACTOR) SQ tnnnCCatnnC CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. 1.744 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 2888 2898 1.74414 0 0: 0 0 TACCCCATGCC 2 5293 5303 1.74414 0 0: 0 0 TCGTCCATTTC NM **** 187(2.) CRF FACTOR(CCAAT-BOX BINDING FACTOR) SQ tnnnCCatnnC CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. 1.744 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 2888 2898 1.74414 0 0: 0 0 TACCCCATGCC 2 5293 5303 1.74414 0 0: 0 0 TCGTCCATTTC NM **** 188(3). USF II FACTOR OF ADENOVIRUS SQ tgacgca CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .436 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 6339 6345 .43628 0 0: 0 0 TGACGCA NM **** 189(4). ADENOVIRUS E2F FACtOR SQ tttcgcgc AI 00000 2 chain 1 sites find / exp.num. .109 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 6205 6198 .10905 0 0: 0 0 TTTCGCGC NM **** 190(5). ADENOVIRUS EPF FACtOR SQ atgacgt CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .436 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 1468 1474 .43628 0 0: 0 0 ATGACGT AI 00000 2 chain 2 sites find / exp.num. .436 interval 2 TD 1 3156 3150 .43628 0 0: 0 0 ATGACGT 2 3579 3573 .43628 0 0: 0 0 ATGACGT NM **** 192(7). LARGE T PROTEIN OF PAPILLOMA VIRUS SQ xgrggc CC max mismatch : 0 AI 00000 1 chain 7 sites find / exp.num. 6.981 interval 12 TH num begin end exp.num. dist. mismatch site sequence TD 1 176 181 6.98145 0 0: 0 0 TGAGGC 2 1664 1669 6.98145 0 0: 0 0 AGAGGC 3 1877 1882 6.98145 0 0: 0 0 TGAGGC 4 2081 2086 6.98145 0 0: 0 0 AGAGGC 5 5121 5126 6.98145 0 0: 0 0 AGAGGC 6 5429 5434 6.98145 0 0: 0 0 TGAGGC 7 6919 6924 6.98145 0 0: 0 0 TGAGGC AI 00000 2 chain 3 sites find / exp.num. 6.981 interval 12 TD 1 1855 1850 6.98145 0 0: 0 0 TGGGGC 2 1862 1857 6.98145 0 0: 0 0 AGGGGC 3 4874 4869 6.98145 0 0: 0 0 TGAGGC NM **** 193(8). RPG FACTOR SQ tgg-cca CC distance between two blocks of site: min = 7 max = 7 CC max mismatch in 1-st block: 0, in 2-nd block: 0 AI 00000 1 chain 2 sites find / exp.num. 1.744 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 411 423 1.74365 7 0: 0 0 TGGcgcccaaCCA 2 4242 4254 1.74365 7 0: 0 0 TGGcaagtttCCA AI 00000 2 chain 2 sites find / exp.num. 1.744 interval 4 TD 1 423 411 1.74365 7 0: 0 0 TGGttgggcgCCA 2 4254 4242 1.74365 7 0: 0 0 TGGaaacttgCCA NM **** 195(12). AP1-FACTOR SQ tgaztcag AI 00000 2 chain 1 sites find / exp.num. .218 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 2818 2811 .21811 0 0: 0 0 TGAGTCAG NM **** 198(17). SITE 3 J vir.v62 n1 p64 SQ cCCCAGGCc CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .191 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1851 1859 .02726 0 0: 0 0 CCCCAGGCC NM **** 200(20). AP2 FACTOR SQ tccCCanzzz CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .218 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1844 1853 .21805 0 0: 0 0 TCCCCAGCCC NM **** 201(21). Binding site for the human transcription factor Sp1 SQ gggcgg CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. 1.745 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 1838 1843 1.74536 0 0: 0 0 GGGCGG NM **** 203(23).Consensus sequence for cAMP receptor protein (CRP or CAP) SQ aantgtganntnnnnca CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .211 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 4858 4874 .21103 0 1: 1 0 AATTGCGAGATGCCTCA NM **** 205(25). EMBO (1986) V 5 N 6 P 138 H 21.16 SQ tggmnnnnngccaa AI 00000 2 chain 1 sites find / exp.num. .054 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 4254 4241 .05448 0 0: 0 0 TGGAAACTTGCCAA NM **** 41(5). HEAt-SHOSK RESPONSIVE ELEMENT SQ ttcnngaa CC max mismatch : 0 AI 00000 1 chain 8 sites find / exp.num. 1.745 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 481 488 1.74487 0 0: 0 0 TTCACGAA 2 1239 1246 1.74487 0 0: 0 0 TTCAAGAA 3 1695 1702 1.74487 0 0: 0 0 TTCGCGAA 4 2064 2071 1.74487 0 0: 0 0 TTCGAGAA 5 2852 2859 1.74487 0 0: 0 0 TTCAGGAA 6 3339 3346 1.74487 0 0: 0 0 TTCAGGAA 7 3596 3603 1.74487 0 0: 0 0 TTCCAGAA 8 5105 5112 1.74487 0 0: 0 0 TTCCAGAA AI 00000 2 chain 8 sites find / exp.num. 1.745 interval 4 TD 1 488 481 1.74487 0 0: 0 0 TTCGTGAA 2 1246 1239 1.74487 0 0: 0 0 TTCTTGAA 3 1702 1695 1.74487 0 0: 0 0 TTCGCGAA 4 2071 2064 1.74487 0 0: 0 0 TTCTCGAA 5 2859 2852 1.74487 0 0: 0 0 TTCCTGAA 6 3346 3339 1.74487 0 0: 0 0 TTCCTGAA 7 3603 3596 1.74487 0 0: 0 0 TTCTGGAA 8 5112 5105 1.74487 0 0: 0 0 TTCTGGAA NM **** 42(7). heat-shock HSP70 SQ ctcgaatgTTcgcgaaa CC max mismatch : 5 AI 00000 1 chain 1 sites find / exp.num. .355 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1687 1703 .35465 0 5: 5 0 GAAGCATGTTCGCGAAC AI 00000 2 chain 1 sites find / exp.num. .355 interval 1 TD 1 2160 2144 .35465 0 5: 5 0 CGGGAGTGTTCCCTAAA NM **** 44(10). HEAVY METALL RESPONSIVE ELEMENT SQ tgCrcyc CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. 1.745 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 4944 4950 1.74512 0 0: 0 0 TGCACTC 2 5309 5315 1.74512 0 0: 0 0 TGCACTC AI 00000 2 chain 2 sites find / exp.num. 1.745 interval 4 TD 1 1735 1729 1.74512 0 0: 0 0 TGCGCTC 2 4374 4368 1.74512 0 0: 0 0 TGCGCTC NM **** 47(14). GLUCOCORTICOID RESPONSIVE ELEMENT SQ gnnjCj-tGttCt AI 00000 2 chain 1 sites find / exp.num. .184 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 5126 5112 .18385 3 0: 0 0 GCCTCTtgtTGTTCT NM **** 48(33).Consensus sequence of the recognition sites for the glucocorti SQ tgttct AI 00000 2 chain 8 sites find / exp.num. 1.745 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 324 319 1.74536 0 0: 0 0 TGTTCT 2 394 389 1.74536 0 0: 0 0 TGTTCT 3 3851 3846 1.74536 0 0: 0 0 TGTTCT 4 5117 5112 1.74536 0 0: 0 0 TGTTCT 5 5160 5155 1.74536 0 0: 0 0 TGTTCT 6 5553 5548 1.74536 0 0: 0 0 TGTTCT 7 7067 7062 1.74536 0 0: 0 0 TGTTCT 8 7137 7132 1.74536 0 0: 0 0 TGTTCT NM **** 49(23).Site of "drug" induction of genes P-450c SQ znqrgctggg CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. .218 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 891 900 .21805 0 0: 0 0 GATAGCTGGG 2 2182 2191 .21805 0 0: 0 0 GTTGGCTGGG NM **** 213(2). HEAVI-METALS INDUCTION ELEMENT SQ tgcgcycgg AI 00000 2 chain 1 sites find / exp.num. .055 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1735 1727 .05452 0 0: 0 0 TGCGCTCGG NM **** 232(1). NF-Y FACTOR SQ arCCAAtnag CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .055 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 841 850 .05451 0 0: 0 0 AGCCAATGAG AI 00000 2 chain 1 sites find / exp.num. .055 interval 1 TD 1 6634 6625 .05451 0 0: 0 0 AGCCAATTAG NM **** 234(3). LIVER-SPECIFIC FACtOR SQ TCntacTC CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .436 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 926 933 .43622 0 0: 0 0 TCCTACTC NM **** 235(4). CCCAC-BOX BINDING FACTOR SQ cccac CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. 6.982 interval 12 TH num begin end exp.num. dist. mismatch site sequence TD 1 4235 4239 6.98242 0 0: 0 0 CCCAC AI 00000 2 chain 1 sites find / exp.num. 6.982 interval 12 TD 1 3755 3751 6.98242 0 0: 0 0 CCCAC NM **** 242(11). ANTITROMBIN-III ENHANCER SPECIFIC FACTOR SQ gtGGxxxg AI 00000 2 chain 2 sites find / exp.num. .872 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 5503 5496 .87244 0 0: 0 0 GTGGAAAG 2 6508 6501 .87244 0 0: 0 0 GTGGTATG NM **** 246(15). NF-GMB PROTEIN FOR CYTOKIN 2 SPECIFIC SEQUENCE SQ tyaggrta CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. .436 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 182 189 .43622 0 0: 0 0 TTAGGGTA 2 6925 6932 .43622 0 0: 0 0 TTAGGGTA AI 00000 2 chain 2 sites find / exp.num. .436 interval 2 TD 1 3110 3103 .43622 0 0: 0 0 TCAGGATA 2 6038 6031 .43622 0 0: 0 0 TTAGGGTA NM **** 252(21). RIBOSOMAL PROTEIN SPECIFIC MOTIF (JBC v263 n33 p17772) SQ cttccg CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. 1.745 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 2162 2167 1.74536 0 0: 0 0 CTTCCG 2 2547 2552 1.74536 0 0: 0 0 CTTCCG NM **** 253(22).cycle histone MCB 85 5 2 380 389 SQ GAYTTC CC max mismatch : 0 AI 00000 1 chain 10 sites find / exp.num. 3.491 interval 7 TH num begin end exp.num. dist. mismatch site sequence TD 1 460 465 3.49072 0 0: 0 0 GATTTC 2 1173 1178 3.49072 0 0: 0 0 GATTTC 3 2708 2713 3.49072 0 0: 0 0 GACTTC 4 2849 2854 3.49072 0 0: 0 0 GACTTC 5 3007 3012 3.49072 0 0: 0 0 GACTTC 6 3682 3687 3.49072 0 0: 0 0 GATTTC 7 5359 5364 3.49072 0 0: 0 0 GACTTC 8 5599 5604 3.49072 0 0: 0 0 GATTTC 9 5650 5655 3.49072 0 0: 0 0 GATTTC 10 6550 6555 3.49072 0 0: 0 0 GATTTC AI 00000 2 chain 5 sites find / exp.num. 3.491 interval 7 TD 1 911 906 3.49072 0 0: 0 0 GATTTC 2 1815 1810 3.49072 0 0: 0 0 GATTTC 3 2320 2315 3.49072 0 0: 0 0 GATTTC 4 3879 3874 3.49072 0 0: 0 0 GATTTC 5 4348 4343 3.49072 0 0: 0 0 GATTTC NM **** 254(23). cycle cell 86 45 4 537 544 trt1 SQ GCGAAA CC max mismatch : 0 AI 00000 1 chain 6 sites find / exp.num. 1.745 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 1441 1446 1.74536 0 0: 0 0 GCGAAA 2 3000 3005 1.74536 0 0: 0 0 GCGAAA 3 4108 4113 1.74536 0 0: 0 0 GCGAAA 4 4545 4550 1.74536 0 0: 0 0 GCGAAA 5 6128 6133 1.74536 0 0: 0 0 GCGAAA 6 6200 6205 1.74536 0 0: 0 0 GCGAAA AI 00000 2 chain 1 sites find / exp.num. 1.745 interval 4 TD 1 4129 4124 1.74536 0 0: 0 0 GCGAAA NM **** 257(26).Regulated element of gene LSP of D.melanogaster EMBO J (1985) V 4 N P 3789 H SQ aaaytaaagctggt CC max mismatch : 3 AI 00000 1 chain 1 sites find / exp.num. .490 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 1482 1495 .48980 0 3: 3 0 AAACTCACGCTCGT AI 00000 2 chain 1 sites find / exp.num. .490 interval 2 TD 1 1059 1046 .48980 0 3: 3 0 AAGCTAAAGCGGTT NM **** 258(27).Regulating element of promotor of contractive(KONTRAKTILNIY) SQ cattcct CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .436 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 583 589 .43628 0 0: 0 0 CATTCCT NM **** 263(32).Sequence repeated 5 times in the promoter of the mouse SQ gaaga CC max mismatch : 0 AI 00000 1 chain 9 sites find / exp.num. 6.982 interval 12 TH num begin end exp.num. dist. mismatch site sequence TD 1 471 475 6.98242 0 0: 0 0 GAAGA 2 954 958 6.98242 0 0: 0 0 GAAGA 3 2091 2095 6.98242 0 0: 0 0 GAAGA 4 2200 2204 6.98242 0 0: 0 0 GAAGA 5 3569 3573 6.98242 0 0: 0 0 GAAGA 6 3974 3978 6.98242 0 0: 0 0 GAAGA 7 4501 4505 6.98242 0 0: 0 0 GAAGA 8 5110 5114 6.98242 0 0: 0 0 GAAGA 9 6109 6113 6.98242 0 0: 0 0 GAAGA AI 00000 2 chain 6 sites find / exp.num. 6.982 interval 12 TD 1 571 567 6.98242 0 0: 0 0 GAAGA 2 1909 1905 6.98242 0 0: 0 0 GAAGA 3 3262 3258 6.98242 0 0: 0 0 GAAGA 4 4235 4231 6.98242 0 0: 0 0 GAAGA 5 5569 5565 6.98242 0 0: 0 0 GAAGA 6 6642 6638 6.98242 0 0: 0 0 GAAGA NM **** 264(33)."CCAAT box";one of a number of homology blocks at the 5'-ends SQ grccaatnr CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .436 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 3669 3677 .43616 0 0: 0 0 GGCCAATAA NM **** 265(34).Consensus sequence of a putative transcription control elemen SQ tcccgcm CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. .873 interval 3 TH num begin end exp.num. dist. mismatch site sequence TD 1 4696 4702 .87256 0 0: 0 0 TCCCGCA 2 5776 5782 .87256 0 0: 0 0 TCCCGCA NM **** 268(37).Consensus sequence of repeated hexanucleotides within the 5'- SQ aarqga CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. 6.981 interval 12 TH num begin end exp.num. dist. mismatch site sequence TD 1 456 461 6.98145 0 0: 0 0 AAGTGA 2 6132 6137 6.98145 0 0: 0 0 AAAGGA AI 00000 2 chain 12 sites find / exp.num. 6.981 interval 12 TD 1 591 586 6.98145 0 0: 0 0 AAAGGA 2 1150 1145 6.98145 0 0: 0 0 AAGGGA 3 2624 2619 6.98145 0 0: 0 0 AAGGGA 4 3016 3011 6.98145 0 0: 0 0 AAATGA 5 4757 4752 6.98145 0 0: 0 0 AAGTGA 6 5148 5143 6.98145 0 0: 0 0 AAGGGA 7 5319 5314 6.98145 0 0: 0 0 AAGTGA 8 5499 5494 6.98145 0 0: 0 0 AAAGGA 9 5810 5805 6.98145 0 0: 0 0 AAATGA 10 5940 5935 6.98145 0 0: 0 0 AAGTGA 11 6222 6217 6.98145 0 0: 0 0 AAGGGA 12 6646 6641 6.98145 0 0: 0 0 AAAGGA NM **** 269(38).Consensus of a sequence found downstream from the cap site of SQ gcttctgr CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .218 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 4991 4998 .21811 0 0: 0 0 GCTTCTGA NM **** 271(41).Sequence frequently found in the promoter region of histone H SQ cgcac CC max mismatch : 0 AI 00000 1 chain 4 sites find / exp.num. 6.982 interval 12 TH num begin end exp.num. dist. mismatch site sequence TD 1 1964 1968 6.98242 0 0: 0 0 CGCAC 2 2117 2121 6.98242 0 0: 0 0 CGCAC 3 4371 4375 6.98242 0 0: 0 0 CGCAC 4 6320 6324 6.98242 0 0: 0 0 CGCAC