ID DMP DE D.MELANOGASTER TRANSPOSABLE ELEMENT P NM **** 1.(1) POLIMERASE II SQ tATAaa CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .708 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 1785 1790 .70850 0 0: 0 0 TATAAA AI 00000 2 chain 1 sites find / exp.num. .708 interval 2 TD 1 2000 1995 .70850 0 0: 0 0 TATAAA NM **** 2.(1.1) Inr (ripl.POLIMERASE II) SQ NTCAQTY CC max mismatch : 0 AI 00000 1 chain 4 sites find / exp.num. 2.833 interval 6 TH num begin end exp.num. dist. mismatch site sequence TD 1 465 471 2.83301 0 0: 0 0 ATCATTT 2 2036 2042 2.83301 0 0: 0 0 TTCAGTT 3 2098 2104 2.83301 0 0: 0 0 TTCATTT 4 2212 2218 2.83301 0 0: 0 0 TTCAGTT AI 00000 2 chain 3 sites find / exp.num. 2.833 interval 6 1 157 151 2.83301 0 0: 0 0 TTCATTT 2 1586 1580 2.83301 0 0: 0 0 ATCATTC 3 1676 1670 2.83301 0 0: 0 0 ATCATTC NM **** 3.(38a) "TATA box";one of a number of homology blocks at the 5'-ends SQ gtataaaatag CC max mismatch : 2 AI 00000 1 chain 2 sites find / exp.num. .365 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 747 757 .36538 0 2: 2 0 GTACAAAAAAG 2 1937 1947 .36538 0 2: 2 0 ATATATAATAG AI 00000 2 chain 1 sites find / exp.num. .365 interval 2 TD 1 1116 1106 .36538 0 2: 2 0 GGATACAATAG NM **** 4.(9a) n=55;found upstream from the promoter of the pheasant conalbu- SQ ggaaa CC max mismatch : 0 AI 00000 1 chain 11 sites find / exp.num. 2.835 interval 6 TH num begin end exp.num. dist. mismatch site sequence TD 1 89 93 2.83496 0 0: 0 0 GGAAA 2 537 541 2.83496 0 0: 0 0 GGAAA 3 1073 1077 2.83496 0 0: 0 0 GGAAA 4 1085 1089 2.83496 0 0: 0 0 GGAAA 5 1129 1133 2.83496 0 0: 0 0 GGAAA 6 1342 1346 2.83496 0 0: 0 0 GGAAA 7 1694 1698 2.83496 0 0: 0 0 GGAAA 8 2029 2033 2.83496 0 0: 0 0 GGAAA 9 2167 2171 2.83496 0 0: 0 0 GGAAA 10 2538 2542 2.83496 0 0: 0 0 GGAAA 11 2677 2681 2.83496 0 0: 0 0 GGAAA AI 00000 2 chain 1 sites find / exp.num. 2.835 interval 6 TD 1 764 760 2.83496 0 0: 0 0 GGAAA NM **** 5.(8a) consensus sequence of Drosophila heat shock gene promoters SQ ctggaatnttctag AI 00000 2 chain 1 sites find / exp.num. .365 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 1810 1797 .36500 0 3: 3 0 CTGAAGTTTTCTTG NM **** 6.(5) POLY A SINGLE BLOCK SQ AATAAA CC max mismatch : 0 AI 00000 1 chain 4 sites find / exp.num. .708 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 142 147 .70850 0 0: 0 0 AATAAA 2 1334 1339 .70850 0 0: 0 0 AATAAA 3 2233 2238 .70850 0 0: 0 0 AATAAA 4 2697 2702 .70850 0 0: 0 0 AATAAA AI 00000 2 chain 2 sites find / exp.num. .708 interval 2 TD 1 2108 2103 .70850 0 0: 0 0 AATAAA 2 2599 2594 .70850 0 0: 0 0 AATAAA NM **** 8.(14b) One of two related variants of a presumed transcription termi SQ tatgt CC max mismatch : 0 AI 00000 1 chain 7 sites find / exp.num. 2.835 interval 6 TH num begin end exp.num. dist. mismatch site sequence TD 1 471 475 2.83496 0 0: 0 0 TATGT 2 967 971 2.83496 0 0: 0 0 TATGT 3 1314 1318 2.83496 0 0: 0 0 TATGT 4 2020 2024 2.83496 0 0: 0 0 TATGT 5 2058 2062 2.83496 0 0: 0 0 TATGT 6 2350 2354 2.83496 0 0: 0 0 TATGT 7 2891 2895 2.83496 0 0: 0 0 TATGT AI 00000 2 chain 4 sites find / exp.num. 2.835 interval 6 TD 1 17 13 2.83496 0 0: 0 0 TATGT 2 813 809 2.83496 0 0: 0 0 TATGT 3 1823 1819 2.83496 0 0: 0 0 TATGT 4 2408 2404 2.83496 0 0: 0 0 TATGT NM **** 10.(18) ORI HUM SQ taaatttagt CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .086 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 60 69 .08568 0 1: 1 0 TAAATTCAGT NM **** 13.(19) ARS Y XE DM SQ xtttatrtttx CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .155 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 2005 2015 .15472 0 1: 1 0 TTTAATGTTTA AI 00000 2 chain 4 sites find / exp.num. .155 interval 1 TD 1 410 400 .15472 0 1: 1 0 TTTTATCTTTT 2 1944 1934 .15472 0 1: 1 0 TTATATATTTT 3 1982 1972 .15472 0 1: 1 0 ATTTTTGTTTA 4 2703 2693 .15472 0 1: 1 0 TTTTATTTTTA NM **** 14.(24) ARS yeast, xenopus SQ xttttatrtttx AI 00000 2 chain 1 sites find / exp.num. .043 interval 0 TH num begin end exp.num. dist. mismatch site sequence TD 1 1945 1934 .04281 0 1: 1 0 ATTATATATTTT NM **** 15.(22) SAR A BOX OF DROSOFILA j mol biol v198 n 4 p677 &cell v46 n4 SQ aataaayaaa CC max mismatch : 1 AI 00000 1 chain 2 sites find / exp.num. .160 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 142 151 .16030 0 1: 1 0 AATAAAAAAA 2 1348 1357 .16030 0 1: 1 0 AATTAACAAA NM **** 16.(23) SAR T BOX OF DROSOFILA cell v46 n4 p521 SQ TtXTxTTXtt CC max mismatch : 1 AI 00000 1 chain 6 sites find / exp.num. .243 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 111 120 .24321 0 1: 1 0 TTTTTTTTTG 2 2099 2108 .24321 0 1: 1 0 TCATTTTATT 3 2102 2111 .02211 0 0: 0 0 TTTTATTATT 4 2590 2599 .24321 0 1: 1 0 TCTTTTTATT 5 2593 2602 .24321 0 1: 1 0 TTTTATTTTA 6 2890 2899 .24321 0 1: 1 0 TTATGTTATT AI 00000 2 chain 13 sites find / exp.num. .287 interval 1 TD 1 18 9 .28743 0 1: 1 0 TTATGTTATT 2 151 142 .02211 0 0: 0 0 TTTTTTTATT 3 152 143 .28743 0 1: 1 0 TTTTTTTTAT 4 153 144 .28743 0 1: 1 0 TTTTTTTTTA 5 156 147 .28743 0 1: 1 0 TCATTTTTTT 6 464 455 .28743 0 1: 1 0 TTTTTTTACT 7 468 459 .28743 0 1: 1 0 TGATTTTTTT 8 1362 1353 .28743 0 1: 1 0 TTTTTTTTGT 9 1364 1355 .28743 0 1: 1 0 TGTTTTTTTT 10 2239 2230 .28743 0 1: 1 0 TTTTATTTTC 11 2512 2503 .28743 0 1: 1 0 TATTATTATT 12 2669 2660 .28743 0 1: 1 0 TTTTGTTTTT 13 2703 2694 .02211 0 0: 0 0 TTTTATTTTT NM **** 17(30). initiation of translation in genes of animals SQ zaannatgg CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .354 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 654 662 .35388 0 0: 0 0 GAAGAATGG NM **** 60(11). INTRON-EXON JUNCTION SQ yyyyynyAGG AI 00000 2 chain 1 sites find / exp.num. .708 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 330 321 .70752 0 0: 0 0 CTTTTGCAGG NM **** 61(12). lar+3' SQ YTaAT-yyyyaG CC distance between two blocks of site: min = 16 max = 36 CC max mismatch in 1-st block: 0, in 2-nd block: 0 AI 00000 1 chain 1 sites find / exp.num. .460 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 2006 2040 .45998 24 0: 0 0 TTAATgtttagctatatgtttcaggaaagTTTCAG AI 00000 2 chain 1 sites find / exp.num. .460 interval 2 TD 1 226 187 .45998 29 0: 0 0 TTAATagcacacttcggcacgtgaattaattttaCTCCAG NM **** 64(17). ORI MT !!! SQ trtgytytr CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .177 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 2072 2080 .17694 0 0: 0 0 TGTGTTTTG NM **** 66(25).ARS-fragment of chlamydomonada SQ attaacaat CC max mismatch : 1 AI 00000 1 chain 7 sites find / exp.num. .310 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1057 1065 .30965 0 1: 1 0 CTTAACAAT 2 1328 1336 .01106 0 0: 0 0 ATTAACAAT 3 1349 1357 .30965 0 1: 1 0 ATTAACAAA 4 1823 1831 .30965 0 1: 1 0 ATTAACAAG 5 2650 2658 .30965 0 1: 1 0 ATTAAAAAT 6 2691 2699 .30965 0 1: 1 0 ATTAAAAAT 7 2772 2780 .30965 0 1: 1 0 ATCAACAAT AI 00000 2 chain 2 sites find / exp.num. .310 interval 1 TD 1 1604 1596 .30965 0 1: 1 0 ATTAAAAAT 2 1763 1755 .30965 0 1: 1 0 ATTCACAAT NM **** 69(28).ARS of human SQ tattyytaaatttagtxt CC max mismatch : 5 AI 00000 1 chain 5 sites find / exp.num. .426 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 54 71 .42590 0 5: 5 0 TACACTTAAATTCAGTGC 2 1595 1612 .42590 0 5: 5 0 CATTTTTAATTCTAAATT 3 2093 2110 .42590 0 5: 5 0 TTCTTTTCATTTTATTAT 4 2595 2612 .05608 0 4: 4 0 TTATTTTAAAATTAGAAT 5 2614 2631 .05608 0 4: 4 0 TATTTTAGAATTAAGTAC AI 00000 2 chain 7 sites find / exp.num. .426 interval 2 TD 1 1967 1950 .42590 0 5: 5 0 TTCTTTTAAATTTGTCAT 2 2248 2231 .42590 0 5: 5 0 CATCTTTACTTTTATTTT 3 2524 2507 .05608 0 4: 4 0 TAATTTCAAAATTATTAT 4 2530 2513 .42590 0 5: 5 0 TATTTGTAATTTCAAAAT 5 2625 2608 .42590 0 5: 5 0 AATTCTAAAATATATTCT 6 2659 2642 .05608 0 4: 4 0 GATTTTTAATTTCAATTT 7 2714 2697 .05608 0 4: 4 0 TATTTTTAAAGTTTTATT NM **** 70(29).conservative sequence of ORI of adenovirus (AD) SQ cxnymtmxataatataccyyay CC max mismatch : 5 AI 00000 1 chain 1 sites find / exp.num. .200 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 2812 2833 .20017 0 5: 5 0 CACTCAGAATACTATTCCTTTC AI 00000 2 chain 1 sites find / exp.num. .200 interval 1 TD 1 1548 1527 .20017 0 5: 5 0 CATTTTCAATGTCATACCCCAA NM **** 71(31).sequence repeated nontandemly several times in the origin of t SQ gcctc AI 00000 2 chain 2 sites find / exp.num. 2.835 interval 6 TH num begin end exp.num. dist. mismatch site sequence TD 1 351 347 2.83496 0 0: 0 0 GCCTC 2 1375 1371 2.83496 0 0: 0 0 GCCTC NM **** 72(33).consensus sequence of the cores of autonomously replicating SQ xaaayataaax CC max mismatch : 1 AI 00000 1 chain 4 sites find / exp.num. .155 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 400 410 .15472 0 1: 1 0 AAAAGATAAAA 2 1934 1944 .15472 0 1: 1 0 AAAATATATAA 3 1972 1982 .15472 0 1: 1 0 TAAACAAAAAT 4 2693 2703 .15472 0 1: 1 0 TAAAAATAAAA AI 00000 2 chain 1 sites find / exp.num. .155 interval 1 TD 1 2015 2005 .15472 0 1: 1 0 TAAACATTAAA NM **** 75(3a).Promotor of RNA polymerase 1 (human) SQ atcttt-ttttgg CC distance between two blocks of site: min = 18 max = 22 CC max mismatch in 1-st block: 1, in 2-nd block: 1 AI 00000 1 chain 2 sites find / exp.num. .309 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1092 1124 .30942 21 2: 1 1 ATATTTagtagttgctattgtatccgaTTTAGG 2 2589 2621 .01629 21 1: 0 1 ATCTTTttattttaaaattagaatataTTTTAG AI 00000 2 chain 1 sites find / exp.num. .309 interval 1 TD 1 2713 2684 .30942 18 2: 1 1 ATTTTTaaagttttatttttaataATTTGG NM **** 82(13a).consensus sequence near the 3'-ends of the adenovirus 2 genes SQ ttgggg CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .708 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 1527 1532 .70850 0 0: 0 0 TTGGGG NM **** 93(24a).consensus sequence of the -50 region of promoters of small SQ gtzaccgygngtxaaqgtg AI 00000 2 chain 2 sites find / exp.num. .094 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1838 1820 .09409 0 4: 4 0 GAGACGGCTTGTTAATATG 2 2415 2397 .09409 0 4: 4 0 GTCGACGTATGTAAATGTC NM **** 97(28a).consensus sequence of human mitochondrial promoters SQ canaccccaaagaya CC max mismatch : 3 AI 00000 1 chain 1 sites find / exp.num. .198 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 2745 2759 .01686 0 2: 2 0 CAAACCCCACGGACA AI 00000 2 chain 1 sites find / exp.num. .198 interval 1 TD 1 1536 1522 .19843 0 3: 3 0 CATACCCCAATGAAT NM **** 100(32a).consensus of the TATA-box of Dictyostelium promoters SQ tataaaxa CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .089 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1785 1792 .08850 0 0: 0 0 TATAAATA NM **** 101(33a)."Goldberg-Hogness box";consensus sequence belonging to eukar SQ tataxax CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. .708 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 1785 1791 .70825 0 0: 0 0 TATAAAT 2 1938 1944 .70825 0 0: 0 0 TATATAA AI 00000 2 chain 2 sites find / exp.num. .708 interval 2 TD 1 1943 1937 .70825 0 0: 0 0 TATATAT 2 2000 1994 .70825 0 0: 0 0 TATAAAT NM **** 103(36a).consensus sequence of a tentative transcription initiation SQ aagtta CC max mismatch : 0 AI 00000 1 chain 3 sites find / exp.num. .708 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 1296 1301 .70850 0 0: 0 0 AAGTTA 2 2464 2469 .70850 0 0: 0 0 AAGTTA 3 2668 2673 .70850 0 0: 0 0 AAGTTA NM **** 104(37a).sequence frequently found in the promoter region of histone SQ ccgca CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. 2.835 interval 6 TH num begin end exp.num. dist. mismatch site sequence TD 1 719 723 2.83496 0 0: 0 0 CCGCA AI 00000 2 chain 2 sites find / exp.num. 2.835 interval 6 TD 1 105 101 2.83496 0 0: 0 0 CCGCA 2 1563 1559 2.83496 0 0: 0 0 CCGCA NM **** 118(12b).Preferential site of transcription termination in yeast gene SQ caaqctttg CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .022 interval 0 TH num begin end exp.num. dist. mismatch site sequence TD 1 876 884 .02212 0 0: 0 0 CAAGCTTTG NM **** 119(13b).One of two related variants of a presumed transcription term SQ tagtggtggtgggct CC max mismatch : 4 AI 00000 1 chain 1 sites find / exp.num. .334 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 981 995 .33367 0 4: 4 0 TATTGTTCGTGGTCT AI 00000 2 chain 1 sites find / exp.num. .334 interval 1 TD 1 1315 1301 .33367 0 4: 4 0 TAGTGGTTACGGACT NM **** 125(23b).Consensus mRNA cap site in Drosophila Cell 29,1027 (Gnomic) SQ yatcxgq CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. 1.417 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 742 748 1.41650 0 0: 0 0 CATCTGT 2 2086 2092 1.41650 0 0: 0 0 TATCTGT AI 00000 2 chain 1 sites find / exp.num. 1.417 interval 4 TD 1 794 788 1.41650 0 0: 0 0 CATCTGT NM **** 126(24b)."Cap box";one of a number of homology blocks at the 5'-ends SQ ycattcr AI 00000 2 chain 2 sites find / exp.num. .708 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 1045 1039 .70825 0 0: 0 0 CCATTCG 2 1585 1579 .70825 0 0: 0 0 TCATTCA NM **** 129(27b).Consensus of a presumed transcription processing signal of m SQ ataatattctt CC max mismatch : 2 AI 00000 1 chain 2 sites find / exp.num. .365 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 2507 2517 .36538 0 2: 2 0 ATAATAATTTT 2 2820 2830 .36538 0 2: 2 0 ATACTATTCCT AI 00000 2 chain 2 sites find / exp.num. .365 interval 2 TD 1 2735 2725 .36538 0 2: 2 0 ATAATATTAAT 2 2826 2816 .36538 0 2: 2 0 ATAGTATTCTG NM **** 131(29b).Site of splising of vertebrates 3'-end: PNAS (1984) V 81 N 2 SQ yyyyyncagg AI 00000 2 chain 1 sites find / exp.num. .354 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 330 321 .35376 0 0: 0 0 CTTTTGCAGG NM **** 134(35b).Site of splising of plants 3'-end: NAR (1986) V 14 N 24 P 95 SQ tttkttkkkktgcagg AI 00000 2 chain 1 sites find / exp.num. .096 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 152 137 .09601 0 2: 2 0 TTTTTTTTATTCCACG NM **** 139(41b).Consensus sequence found in the same location in intervening SQ aaaatctt CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. .044 interval 0 TH num begin end exp.num. dist. mismatch site sequence TD 1 622 629 .04425 0 0: 0 0 AAAATCTT 2 2586 2593 .04425 0 0: 0 0 AAAATCTT AI 00000 2 chain 1 sites find / exp.num. .044 interval 0 TD 1 1267 1260 .04425 0 0: 0 0 AAAATCTT NM **** 19(5). SECOND MOTIF OF Ad5 E1a SQ zgcgxaa CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .708 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 2558 2564 .70825 0 0: 0 0 CGCGAAA NM **** 20(7). DECAMER FROM IMMUNOGLOBULIN GENES SQ AtGCAAAtna AI 00000 2 chain 1 sites find / exp.num. .111 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 2496 2487 .11055 0 1: 1 0 ATGCAAAAAA NM **** 22(18). PNAS v84 n5 p1272 H21.3.5 PROTEIN BINDING SITE IN c-FOS ENHAN SQ cccgtc CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .708 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 25 30 .70850 0 0: 0 0 CCCGTC AI 00000 2 chain 1 sites find / exp.num. .708 interval 2 TD 1 2883 2878 .70850 0 0: 0 0 CCCGTC NM **** 23(19). EMBO J. v4 n10 p2669 H21.3.9 HSV-1/Herpesvirus samuiri SQ taatgarattc CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .044 interval 0 TH num begin end exp.num. dist. mismatch site sequence TD 1 1421 1431 .04420 0 1: 1 0 TAATGAAAATC NM **** 25(25). LVa MOTIF MoMuLV ENHANCER (Mol Cell Biol v7 n3 p1101) SQ gaacag CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .708 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 1705 1710 .70850 0 0: 0 0 GAACAG AI 00000 2 chain 1 sites find / exp.num. .708 interval 2 TD 1 509 504 .70850 0 0: 0 0 GAACAG NM **** 26(27). LVc MOTIF MoMuLV ENHANCER (Mol Cell Biol v7 n3 p1101) SQ cctgc CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. 2.835 interval 6 TH num begin end exp.num. dist. mismatch site sequence TD 1 321 325 2.83496 0 0: 0 0 CCTGC 2 1242 1246 2.83496 0 0: 0 0 CCTGC AI 00000 2 chain 1 sites find / exp.num. 2.835 interval 6 TD 1 725 721 2.83496 0 0: 0 0 CCTGC NM **** 27(33). LYSOZYME SILENCER 4 (EMBO j v6 n8 p2298) SQ atnnAgtaaaa CC max mismatch : 1 AI 00000 1 chain 3 sites find / exp.num. .276 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 187 197 .27628 0 1: 1 0 CTGGAGTAAAA 2 2378 2388 .27628 0 1: 1 0 ACAAAGTAAAA 3 2579 2589 .27628 0 1: 1 0 AACAAGTAAAA NM **** 35(63).enhancer core SV40 SQ tGTGgxxx CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .354 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1316 1323 .35400 0 0: 0 0 TGTGGATT NM **** 144(6). OCTAMER FROM IMMUNOGLOBULIN GENES SQ atgcaaagc CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .310 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 173 181 .30965 0 1: 1 0 CTGCAAAGC AI 00000 2 chain 1 sites find / exp.num. .310 interval 1 TD 1 887 879 .30965 0 1: 1 0 ACGCAAAGC NM **** 162(31). lysozyme silencer 2 (EMBO J v6 n8 p2298) SQ antcTcctcc AI 00000 2 chain 1 sites find / exp.num. .276 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 615 606 .27637 0 1: 1 0 AGACTCCTCC NM **** 164(35). INSULIN ENHANCER (pnas v84 p8819) SQ gccatctgc AI 00000 2 chain 2 sites find / exp.num. .310 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 368 360 .30965 0 1: 1 0 GGCATCTGC 2 1253 1245 .30965 0 1: 1 0 GTCATCTGC NM **** 170(41).Block C of enchanser of virus SV40 SQ tgtggaaagtcccca CC max mismatch : 4 AI 00000 1 chain 1 sites find / exp.num. .334 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 264 278 .33367 0 4: 4 0 GGTGAAAACTCCCAA NM **** 172(45).Consensus cor sequence of enhancers of adenoviruses; mon SQ mggaagtgam AI 00000 2 chain 1 sites find / exp.num. .298 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 688 679 .29848 0 1: 1 0 CGGAATTGAA NM **** 175(49).Element of enchanser of virus BKV SQ gagtatgca CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .310 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 1808 1816 .30965 0 1: 1 0 CAGTATGCA AI 00000 2 chain 1 sites find / exp.num. .310 interval 1 TD 1 891 883 .30965 0 1: 1 0 GAGTACGCA NM **** 176(50).Element of enchanser of genes of mnRNA (U1,U2) SQ gggcgrcn-yatgcaaat CC distance between two blocks of site: min = 1 max = 3 CC max mismatch in 1-st block: 2, in 2-nd block: 2 AI 00000 1 chain 1 sites find / exp.num. .422 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 310 329 .42172 3 4: 2 2 GGAAGGCTgcaCCTGCAAAA NM **** 184(61).Putative enhancer core sequence of SV40 SQ ggagtggaaag CC max mismatch : 2 AI 00000 1 chain 2 sites find / exp.num. .365 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 84 94 .36538 0 2: 2 0 TGAGAGGAAAG 2 305 315 .36538 0 2: 2 0 GCAGTGGAAGG AI 00000 2 chain 1 sites find / exp.num. .365 interval 2 TD 1 1909 1899 .36538 0 2: 2 0 GGAGTGGGATG NM **** 185(62).consensus sequense located in viral gene activators(enhancers SQ tccacacc CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .044 interval 0 TH num begin end exp.num. dist. mismatch site sequence TD 1 713 720 .04425 0 0: 0 0 TCCACACC NM **** 38(18). AP4 FACTOR Nature v332 1988 p557 SQ yCAGCtgygG AI 00000 2 chain 1 sites find / exp.num. .177 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 589 580 .17688 0 1: 1 0 TCAGCTGCTG NM **** 39(26). NFY SQ ccaat CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. 2.835 interval 6 TH num begin end exp.num. dist. mismatch site sequence TD 1 1621 1625 2.83496 0 0: 0 0 CCAAT AI 00000 2 chain 4 sites find / exp.num. 2.835 interval 6 TD 1 1473 1469 2.83496 0 0: 0 0 CCAAT 2 1530 1526 2.83496 0 0: 0 0 CCAAT 3 1589 1585 2.83496 0 0: 0 0 CCAAT 4 2678 2674 2.83496 0 0: 0 0 CCAAT NM **** 40(2). CRF FACTOR(CCAAT-BOX BINDING FACTOR) SQ tnnnCCatnnC CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .707 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 1894 1904 .70728 0 0: 0 0 TCGACCATCCC AI 00000 2 chain 2 sites find / exp.num. .707 interval 2 TD 1 2315 2305 .70728 0 0: 0 0 TCATCCATTTC 2 2339 2329 .70728 0 0: 0 0 TATTCCATCGC NM **** 187(2.) CRF FACTOR(CCAAT-BOX BINDING FACTOR) SQ tnnnCCatnnC CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .707 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 1894 1904 .70728 0 0: 0 0 TCGACCATCCC AI 00000 2 chain 2 sites find / exp.num. .707 interval 2 TD 1 2315 2305 .70728 0 0: 0 0 TCATCCATTTC 2 2339 2329 .70728 0 0: 0 0 TATTCCATCGC NM **** 189(4). ADENOVIRUS E2F FACtOR SQ tttcgcgc AI 00000 2 chain 1 sites find / exp.num. .044 interval 0 TH num begin end exp.num. dist. mismatch site sequence TD 1 2564 2557 .04425 0 0: 0 0 TTTCGCGC NM **** 202(22).Consensus sequence of the cAMP-CRP(cyclic AMP complex with it SQ aaagtgtgaca CC max mismatch : 2 AI 00000 1 chain 1 sites find / exp.num. .365 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 2390 2400 .36538 0 2: 2 0 AAAATTTGACA NM **** 204(24).Consensus dc sequence essential for correct transcription of SQ tnatttgcat CC max mismatch : 1 AI 00000 1 chain 1 sites find / exp.num. .310 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 2487 2496 .30954 0 1: 1 0 TTTTTTGCAT AI 00000 2 chain 3 sites find / exp.num. .310 interval 1 TD 1 527 518 .30954 0 1: 1 0 TTATTTTCAT 2 1432 1423 .30954 0 1: 1 0 TGATTTTCAT 3 2507 2498 .30954 0 1: 1 0 TTATTTGTAT NM **** 208(29).Consensus sequence of several adenoviral promoters located at SQ gyttagtncgtnarncatgagr AI 00000 2 chain 1 sites find / exp.num. .018 interval 0 TH num begin end exp.num. dist. mismatch site sequence TD 1 2443 2422 .01813 0 4: 4 0 GCTTAATAAGTCCGCCGTGAGA NM **** 209(30).Site of initiation of translation in genes of animals SQ zaannatgg CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .354 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 654 662 .35388 0 0: 0 0 GAAGAATGG NM **** 41(5). HEAt-SHOSK RESPONSIVE ELEMENT SQ ttcnngaa CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. .708 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 2025 2032 .70801 0 0: 0 0 TTCAGGAA 2 2163 2170 .70801 0 0: 0 0 TTCGGGAA AI 00000 2 chain 2 sites find / exp.num. .708 interval 2 TD 1 2032 2025 .70801 0 0: 0 0 TTCCTGAA 2 2170 2163 .70801 0 0: 0 0 TTCCCGAA NM **** 44(10). HEAVY METALL RESPONSIVE ELEMENT SQ tgCrcyc AI 00000 2 chain 1 sites find / exp.num. .708 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 258 252 .70825 0 0: 0 0 TGCACCC NM **** 226(27).Site of induction of aminoacide's deficit in yeast (genes his SQ rrtgactcattt AI 00000 2 chain 1 sites find / exp.num. .345 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 574 563 .34454 0 2: 2 0 AACGACGCATTT NM **** 232(1). NF-Y FACTOR SQ arCCAAtnag AI 00000 2 chain 1 sites find / exp.num. .376 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 1591 1582 .37587 0 1: 1 0 AACCAATCAT NM **** 234(3). LIVER-SPECIFIC FACtOR SQ TCntacTC AI 00000 2 chain 2 sites find / exp.num. .177 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 563 556 .17700 0 0: 0 0 TCGTACTC 2 932 925 .17700 0 0: 0 0 TCATACTC NM **** 235(4). CCCAC-BOX BINDING FACTOR SQ cccac CC max mismatch : 0 AI 00000 1 chain 3 sites find / exp.num. 2.835 interval 6 TH num begin end exp.num. dist. mismatch site sequence TD 1 289 293 2.83496 0 0: 0 0 CCCAC 2 1902 1906 2.83496 0 0: 0 0 CCCAC 3 2750 2754 2.83496 0 0: 0 0 CCCAC AI 00000 2 chain 2 sites find / exp.num. 2.835 interval 6 TD 1 240 236 2.83496 0 0: 0 0 CCCAC 2 428 424 2.83496 0 0: 0 0 CCCAC NM **** 253(22).cycle histone MCB 85 5 2 380 389 SQ GAYTTC CC max mismatch : 0 AI 00000 1 chain 4 sites find / exp.num. 1.417 interval 4 TH num begin end exp.num. dist. mismatch site sequence TD 1 758 763 1.41699 0 0: 0 0 GATTTC 2 1563 1568 1.41699 0 0: 0 0 GACTTC 3 2209 2214 1.41699 0 0: 0 0 GATTTC 4 2296 2301 1.41699 0 0: 0 0 GATTTC NM **** 254(23). cycle cell 86 45 4 537 544 trt1 SQ GCGAAA CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. .708 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 2559 2564 .70850 0 0: 0 0 GCGAAA NM **** 257(26).Regulated element of gene LSP of D.melanogaster EMBO J (1985) V 4 N P 3789 H SQ aaaytaaagctggt CC max mismatch : 3 AI 00000 1 chain 1 sites find / exp.num. .198 interval 1 TH num begin end exp.num. dist. mismatch site sequence TD 1 2237 2250 .19850 0 3: 3 0 AAAGTAAAGATGAT NM **** 260(29).Regurating site of histone genes CC ctnatttgcata AI 00000 2 chain 2 sites find / exp.num. .365 interval 2 TH num begin end exp.num. dist. mismatch site sequence TD 1 528 517 .36525 0 2: 2 0 CTTATTTTCATT 2 2508 2497 .36525 0 2: 2 0 ATTATTTGTATA NM **** 263(32).Sequence repeated 5 times in the promoter of the mouse SQ gaaga CC max mismatch : 0 AI 00000 1 chain 2 sites find / exp.num. 2.835 interval 6 TH num begin end exp.num. dist. mismatch site sequence TD 1 654 658 2.83496 0 0: 0 0 GAAGA 2 2176 2180 2.83496 0 0: 0 0 GAAGA AI 00000 2 chain 2 sites find / exp.num. 2.835 interval 6 TD 1 630 626 2.83496 0 0: 0 0 GAAGA 2 1571 1567 2.83496 0 0: 0 0 GAAGA NM **** 268(37).Consensus sequence of repeated hexanucleotides within the 5'- SQ aarqga CC max mismatch : 0 AI 00000 1 chain 6 sites find / exp.num. 2.834 interval 6 TH num begin end exp.num. dist. mismatch site sequence TD 1 151 156 2.83398 0 0: 0 0 AAATGA 2 343 348 2.83398 0 0: 0 0 AAAGGA 3 379 384 2.83398 0 0: 0 0 AAGTGA 4 754 759 2.83398 0 0: 0 0 AAAGGA 5 1087 1092 2.83398 0 0: 0 0 AAAGGA 6 2535 2540 2.83398 0 0: 0 0 AAAGGA AI 00000 2 chain 5 sites find / exp.num. 2.834 interval 6 TD 1 471 466 2.83398 0 0: 0 0 AAATGA 2 767 762 2.83398 0 0: 0 0 AAAGGA 3 2104 2099 2.83398 0 0: 0 0 AAATGA 4 2126 2121 2.83398 0 0: 0 0 AAAGGA 5 2832 2827 2.83398 0 0: 0 0 AAAGGA NM **** 271(41).Sequence frequently found in the promoter region of histone H SQ cgcac CC max mismatch : 0 AI 00000 1 chain 1 sites find / exp.num. 2.835 interval 6 TH num begin end exp.num. dist. mismatch site sequence TD 1 2837 2841 2.83496 0 0: 0 0 CGCAC AI 00000 2 chain 2 sites find / exp.num. 2.835 interval 6 TD 1 104 100 2.83496 0 0: 0 0 CGCAC 2 496 492 2.83496 0 0: 0 0 CGCAC